RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FBXL17Q9UF56 701 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RBMX2Q9Y388 322 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 PHLPP1O60346 1717 aa4□□□□□ -1.77
USH2A-202ENST00000366942 RGSL1A5PLK6 1076 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SDR42E2A6NKP2 422 aa4□□□□□ -1.77
USH2A-202ENST00000366942 NPIPA5E9PKD4 350 aa4□□□□□ -1.77
USH2A-202ENST00000366942 CNOT3O75175 753 aaKnown RBP4□□□□□ -1.77
USH2A-202ENST00000366942 ITGBL1O95965 494 aaPredicted RBP4□□□□□ -1.77
USH2A-202ENST00000366942 SERPINE1P05121 402 aa4□□□□□ -1.77
USH2A-202ENST00000366942 CAPN1P07384 714 aa4□□□□□ -1.77
USH2A-202ENST00000366942 PECAM1P16284 738 aaPredicted RBP4□□□□□ -1.77
USH2A-202ENST00000366942 CSNK1EP49674 416 aaKnown RBP4□□□□□ -1.77
USH2A-202ENST00000366942 ARFIP1P53367 373 aa4□□□□□ -1.77
USH2A-202ENST00000366942 BTKQ06187 659 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SYT16Q17RD7 645 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ZNF792Q3KQV3 632 aa4□□□□□ -1.77
USH2A-202ENST00000366942 XKR6Q5GH73 641 aa4□□□□□ -1.77
USH2A-202ENST00000366942 CRB2Q5IJ48 1285 aa4□□□□□ -1.77
USH2A-202ENST00000366942 C9orf152Q5JTZ5 239 aa4□□□□□ -1.77
USH2A-202ENST00000366942 TMEM225Q6GV28 225 aa4□□□□□ -1.77
USH2A-202ENST00000366942 DHDDSQ86SQ9 333 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SLC26A11Q86WA9 606 aa4□□□□□ -1.77
USH2A-202ENST00000366942 NAXDQ8IW45 347 aa4□□□□□ -1.77
USH2A-202ENST00000366942 CERS5Q8N5B7 392 aa4□□□□□ -1.77
USH2A-202ENST00000366942 C3orf56Q8N813 242 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ANKRD42Q8N9B4 389 aa4□□□□□ -1.77
USH2A-202ENST00000366942 DCAF4L2Q8NA75 395 aa4□□□□□ -1.77
USH2A-202ENST00000366942 LRTOMTQ8WZ04 291 aa4□□□□□ -1.77
USH2A-202ENST00000366942 THAP11Q96EK4 314 aa4□□□□□ -1.77
USH2A-202ENST00000366942 MFSD3Q96ES6 412 aa4□□□□□ -1.77
USH2A-202ENST00000366942 FAXDC2Q96IV6 333 aa4□□□□□ -1.77
USH2A-202ENST00000366942 MENTQ9BUN1 341 aa4□□□□□ -1.77
USH2A-202ENST00000366942 EFCAB11Q9BUY7 163 aa4□□□□□ -1.77
USH2A-202ENST00000366942 C1orf21Q9H246 121 aa4□□□□□ -1.77
USH2A-202ENST00000366942 STAU2Q9NUL3 570 aaKnown RBP eCLIP4□□□□□ -1.77
USH2A-202ENST00000366942 POT1Q9NUX5 634 aa4□□□□□ -1.77
USH2A-202ENST00000366942 KCNIP1Q9NZI2 227 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SEC14L3Q9UDX4 400 aa4□□□□□ -1.77
USH2A-202ENST00000366942 NPIPA1Q9UND3 350 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ADGBQ8N7X0 1667 aa4□□□□□ -1.77
USH2A-202ENST00000366942 DAB1O75553 588 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SUPT7LO94864 414 aa4□□□□□ -1.77
USH2A-202ENST00000366942 RASAL1O95294 804 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SNRPB2P08579 225 aaKnown RBP4□□□□□ -1.77
USH2A-202ENST00000366942 EPCAMP16422 314 aa4□□□□□ -1.77
USH2A-202ENST00000366942 HOXB6P17509 224 aaKnown RBP4□□□□□ -1.77
USH2A-202ENST00000366942 CD86P42081 329 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SLC15A1P46059 708 aa4□□□□□ -1.77
USH2A-202ENST00000366942 MTNR1AP48039 350 aa4□□□□□ -1.77
USH2A-202ENST00000366942 KCNJ1P48048 391 aa4□□□□□ -1.77
USH2A-202ENST00000366942 PRKAA2P54646 552 aa4□□□□□ -1.77
USH2A-202ENST00000366942 EPHB4P54760 987 aa4□□□□□ -1.77
USH2A-202ENST00000366942 DSG1Q02413 1049 aa4□□□□□ -1.77
USH2A-202ENST00000366942 HERC3Q15034 1050 aa4□□□□□ -1.77
USH2A-202ENST00000366942 NR6A1Q15406 480 aa4□□□□□ -1.77
USH2A-202ENST00000366942 PCID2Q5JVF3 399 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ZNF585AQ6P3V2 769 aa4□□□□□ -1.77
USH2A-202ENST00000366942 USP51Q70EK9 711 aa4□□□□□ -1.77
USH2A-202ENST00000366942 GPSM1Q86YR5 675 aa4□□□□□ -1.77
USH2A-202ENST00000366942 PPP1R36Q96LQ0 422 aa4□□□□□ -1.77
USH2A-202ENST00000366942 OR1F2PQ96R84 312 aa4□□□□□ -1.77
USH2A-202ENST00000366942 APOL2Q9BQE5 337 aa4□□□□□ -1.77
USH2A-202ENST00000366942 DPH1Q9BZG8 443 aa4□□□□□ -1.77
USH2A-202ENST00000366942 OR8D2Q9GZM6 311 aa4□□□□□ -1.77
USH2A-202ENST00000366942 LYARQ9NX58 379 aaKnown RBP4□□□□□ -1.77
USH2A-202ENST00000366942 PSMD13Q9UNM6 376 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ACOT9Q9Y305 439 aa4□□□□□ -1.77
USH2A-202ENST00000366942 FER1L4A9Z1Z3 1794 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ELOA3DA6NLF2 546 aaPredicted RBP4□□□□□ -1.77
USH2A-202ENST00000366942 GRXCR1A8MXD5 290 aa4□□□□□ -1.77
USH2A-202ENST00000366942 HSPA12AO43301 675 aa4□□□□□ -1.77
USH2A-202ENST00000366942 OR1F1O43749 312 aa4□□□□□ -1.77
USH2A-202ENST00000366942 NPHS1O60500 1241 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SCRG1O75711 98 aa4□□□□□ -1.77
USH2A-202ENST00000366942 RSL1D1O76021 490 aaKnown RBP4□□□□□ -1.77
USH2A-202ENST00000366942 MFN2O95140 757 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ZNF865P0CJ78 1059 aaPredicted RBP4□□□□□ -1.77
USH2A-202ENST00000366942 GSTM3P21266 225 aa4□□□□□ -1.77
USH2A-202ENST00000366942 UQCRC2P22695 453 aa4□□□□□ -1.77
USH2A-202ENST00000366942 CTHP32929 405 aa4□□□□□ -1.77
USH2A-202ENST00000366942 TRIM23P36406 574 aa4□□□□□ -1.77
USH2A-202ENST00000366942 PLA2G5P39877 138 aa4□□□□□ -1.77
USH2A-202ENST00000366942 DCTP40126 519 aa4□□□□□ -1.77
USH2A-202ENST00000366942 NAA10P41227 235 aaPredicted RBP4□□□□□ -1.77
USH2A-202ENST00000366942 CSKP41240 450 aa4□□□□□ -1.77
USH2A-202ENST00000366942 FMO5P49326 533 aa4□□□□□ -1.77
USH2A-202ENST00000366942 CLCNKAP51800 687 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SLC5A3P53794 718 aa4□□□□□ -1.77
USH2A-202ENST00000366942 DCDP81605 110 aaKnown RBP4□□□□□ -1.77
USH2A-202ENST00000366942 MCL1Q07820 350 aa4□□□□□ -1.77
USH2A-202ENST00000366942 SP140Q13342 867 aa4□□□□□ -1.77
USH2A-202ENST00000366942 LPIN1Q14693 890 aa4□□□□□ -1.77
USH2A-202ENST00000366942 PDK3Q15120 406 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ELOA3BQ3SY89 546 aa4□□□□□ -1.77
USH2A-202ENST00000366942 ACSM3Q53FZ2 586 aa4□□□□□ -1.77
USH2A-202ENST00000366942 C10orf62Q5T681 223 aaPredicted RBP4□□□□□ -1.77
USH2A-202ENST00000366942 IL23RQ5VWK5 629 aa4□□□□□ -1.77
USH2A-202ENST00000366942 C9orf57Q5W0N0 161 aa4□□□□□ -1.77
USH2A-202ENST00000366942 RNF168Q8IYW5 571 aaPredicted RBP4□□□□□ -1.77
USH2A-202ENST00000366942 POGLUT1Q8NBL1 392 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms