RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 YY2O15391 372 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 PRAMEF4O60810 478 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 CNR2P34972 360 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 MAPK9P45984 424 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 YBX1P67809 324 aaKnown RBP24.36■■□□□ 1.49
SHMT1-207ENST00000580002 PRAMEF9Q5VWM5 478 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 CLEC6AQ6EIG7 209 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 SYT12Q8IV01 421 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 SYTL1Q8IYJ3 562 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 ZNF548Q8NEK5 533 aaPredicted RBP24.36■■□□□ 1.49
SHMT1-207ENST00000580002 SMOC1Q9H4F8 434 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 SH2B3Q9UQQ2 575 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 RAP2CQ9Y3L5 183 aa24.36■■□□□ 1.49
SHMT1-207ENST00000580002 E7ENX8 843 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 K7EPI3 171 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 GALR2O43603 387 aaPredicted RBP24.35■■□□□ 1.49
SHMT1-207ENST00000580002 GNSP15586 552 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 SERPINB3P29508 390 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 HALP42357 657 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 HNMTP50135 292 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 TAP2Q03519 686 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 KRT33BQ14525 404 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 TEAD4Q15561 434 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 RBBP7Q16576 425 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 SH2D4BQ5SQS7 431 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 PIGWQ7Z7B1 504 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 OR52E1Q8NGJ3 308 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 OR56A3Q8NH54 315 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 ILKAPQ9H0C8 392 aaPredicted RBP24.35■■□□□ 1.49
SHMT1-207ENST00000580002 SLC32A1Q9H598 525 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 IPPKQ9H8X2 491 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 KCNK13Q9HB14 408 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 CACNA1EQ15878 2313 aa24.35■■□□□ 1.49
SHMT1-207ENST00000580002 GPR179Q6PRD1 2367 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 KATNA1O75449 491 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 JUNP05412 331 aaKnown RBP24.34■■□□□ 1.49
SHMT1-207ENST00000580002 PNLIPRP1P54315 467 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 ERVPABLB-1P60509 514 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 DEFB133Q30KQ1 61 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 VWA5B1Q5TIE3 1220 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 TTC23LQ6PF05 361 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 THOC6Q86W42 341 aaKnown RBP24.34■■□□□ 1.49
SHMT1-207ENST00000580002 LINC01555Q8NAE3 123 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 OR2I1PQ8NGU4 316 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 MAPK15Q8TD08 544 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 AGAP11Q8TF27 550 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 ZKSCAN7Q9P0L1 754 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-207ENST00000580002 B4DGG1 531 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 PIAS2O75928 621 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 CFIP05156 583 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 LCP2Q13094 533 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 TCAIMQ8N3R3 496 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 SNX31Q8N9S9 440 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 SLC37A2Q8TED4 501 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 ZDHHC1Q8WTX9 485 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 PPP1R36Q96LQ0 422 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 IL21RQ9HBE5 538 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 ICKQ9UPZ9 632 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 PCDHGA2Q9Y5H1 932 aa24.34■■□□□ 1.49
SHMT1-207ENST00000580002 TMEM131Q92545 1883 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 ZNF195O14628 629 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 AQP9O43315 295 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 SNX3O60493 162 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 OR4F21O95013 312 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 HNRNPKP61978 463 aaKnown RBP eCLIP24.33■■□□□ 1.49
SHMT1-207ENST00000580002 TBPL1P62380 186 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 PEAR1Q5VY43 1037 aaPredicted RBP24.33■■□□□ 1.49
SHMT1-207ENST00000580002 LETMD1Q6P1Q0 360 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 ZNF761Q86XN6 746 aaPredicted RBP24.33■■□□□ 1.49
SHMT1-207ENST00000580002 SLC25A45Q8N413 288 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 PIWIL2Q8TC59 973 aaKnown RBP24.33■■□□□ 1.49
SHMT1-207ENST00000580002 MAGEC3Q8TD91 643 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 CXorf40BQ96DE9 158 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 MVB12BQ9H7P6 319 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 SPASTQ9UBP0 616 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 HAO1Q9UJM8 370 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 TIMM22Q9Y584 194 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 ANGPTL3Q9Y5C1 460 aa24.33■■□□□ 1.49
SHMT1-207ENST00000580002 TP53BP1Q12888 1972 aaPredicted RBP24.33■■□□□ 1.48
SHMT1-207ENST00000580002 CABIN1Q9Y6J0 2220 aa24.33■■□□□ 1.48
SHMT1-207ENST00000580002 ZNF318Q5VUA4 2279 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 PRR5-ARHGAP8B1AHC4 643 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 NDUFAB1O14561 156 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 SERPINB5P36952 375 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 RPL14P50914 215 aaKnown RBP24.32■■□□□ 1.48
SHMT1-207ENST00000580002 TRAF3Q13114 568 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 PRKAA1Q13131 559 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 ELOCQ15369 112 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 TCHHL1Q5QJ38 904 aaPredicted RBP24.32■■□□□ 1.48
SHMT1-207ENST00000580002 WDR75Q8IWA0 830 aaKnown RBP24.32■■□□□ 1.48
SHMT1-207ENST00000580002 ATL1Q8WXF7 558 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 SKA1Q96BD8 255 aa24.32■■□□□ 1.48
SHMT1-207ENST00000580002 RPN2P04844 631 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 PSMB5P28074 263 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 MAZP56270 477 aaKnown RBP24.31■■□□□ 1.48
SHMT1-207ENST00000580002 GRIK2Q13002 908 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 SPATA21Q7Z572 469 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 OR4F6Q8NGB9 312 aa24.31■■□□□ 1.48
SHMT1-207ENST00000580002 ELF4Q99607 663 aaPredicted RBP24.31■■□□□ 1.48
SHMT1-207ENST00000580002 TRMOQ9BU70 441 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms