RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 HTR7P34969 479 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PTGER3P43115 390 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 MAGEA12P43365 314 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SERPINB10P48595 397 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CLK3P49761 638 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TPMTP51580 245 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ST8SIA6P61647 398 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TUBA1BP68363 451 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ILF2Q12905 390 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CARTPTQ16568 116 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CYBRD1Q53TN4 286 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 GRTP1Q5TC63 336 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 LIPMQ5VYY2 423 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 USP51Q70EK9 711 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TUBA1AQ71U36 451 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 LINC00523Q86TU6 105 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 AQP12AQ8IXF9 295 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 DDIASQ8IXT1 998 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 FAM110BQ8TC76 370 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 HTR3CQ8WXA8 447 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ISL2Q96A47 359 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ZUFSPQ96AP4 578 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 VPS33AQ96AX1 596 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 HDAC11Q96DB2 347 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ZC3H10Q96K80 434 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 QKIQ96PU8 341 aaKnown RBP eCLIP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 FAM129BQ96TA1 746 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CPNE1Q99829 537 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 FUNDC2Q9BWH2 189 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SLC39A8Q9C0K1 460 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 SMOC1Q9H4F8 434 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PARD6AQ9NPB6 346 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 TMEM248Q9NWD8 314 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 ZDHHC2Q9UIJ5 367 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 WDFY3Q8IZQ1 3526 aa7.5□□□□□ -1.21
LIMA1-216ENST00000552909 CNOT1A5YKK6 2376 aaKnown RBP7.5□□□□□ -1.21
LIMA1-216ENST00000552909 PLXND1Q9Y4D7 1925 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 DOCK9Q9BZ29 2069 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 A0A096LPK6 155 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 IGHV1OR15-9A0A0B4J2B8 117 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 TRPC5OSA6NMA1 111 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 KCNK1O00180 336 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CBX4O00257 560 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 MRASO14807 208 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ACOX3O15254 700 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 MAN1A2O60476 641 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 UGT2B11O75310 529 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ALX3O95076 343 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 JUNP05412 331 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 KRT8P05787 483 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 GSNP06396 782 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ABCB1P08183 1280 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SRPRAP08240 638 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 FCGR1AP12314 374 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 BMP4P12644 408 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SRCP12931 536 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 PRKCAP17252 672 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ELK4P28324 431 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CCR10P46092 362 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SLC7A2P52569 658 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 METAP1P53582 386 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 IST1P53990 364 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CSE1LP55060 971 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 GNG2P59768 71 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RPS14P62263 151 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CLCQ05315 142 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 SPEM2Q0P670 501 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 POLD3Q15054 466 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 PMS2CLQ68D20 193 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 Q6ZVU0 165 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 FAM124AQ86V42 546 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 LACC1Q8IV20 430 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 STK40Q8N2I9 435 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RTL3Q8N8U3 475 aaKnown RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 PIK3C3Q8NEB9 887 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RDH11Q8TC12 318 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 MAGEE2Q8TD90 523 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 FKBP10Q96AY3 582 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 IL12RB2Q99665 862 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 CEP41Q9BYV8 373 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ING2Q9H160 280 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ARRDC1-AS1Q9H2J1 176 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ITM2CQ9NQX7 267 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ACSS2Q9NR19 701 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 FBXO8Q9NRD0 319 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 RAB23Q9ULC3 237 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ASPMQ8IZT6 3477 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ISPDA4D126 451 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 C16orf96A6NNT2 1141 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 F5H423 210 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 H0YAE9 185 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ZBTB24O43167 697 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 B4GAT1O43505 415 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 BNIP3LO60238 219 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ICMTO60725 284 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF821O75541 412 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-216ENST00000552909 KRT6AP02538 564 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 KRT6BP04259 564 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 UBL4AP11441 157 aa7.49□□□□□ -1.21
LIMA1-216ENST00000552909 MLNP12872 115 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms