RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 GBAP04062 536 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 PSMB9P28065 219 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 CYP4F8P98187 520 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 RNF180Q86T96 592 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 IGFN1Q86VF2 1251 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 CLECL1Q8IZS7 167 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 TSPEARQ8WU66 669 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 ASIC4Q96FT7 647 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 PPP3R2Q96LZ3 170 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 FAIMQ9NVQ4 179 aa14.68□□□□□ -0.06
USP28-214ENST00000545540 GLYATL1P3A0A0U1RQE8 302 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 TMEM247A6NEH6 219 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 NRG2O14511 850 aaPredicted RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 STK16O75716 305 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ABCB1P08183 1280 aaPredicted RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 NUDT7P0C024 238 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 S100A3P33764 101 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 RGS4P49798 205 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ATP13A5Q4VNC0 1218 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 MICU2Q8IYU8 434 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 HS6ST3Q8IZP7 471 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ABHD11Q8NFV4 315 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 GLMNQ92990 594 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 VN1R3Q9BXE9 311 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 MIR1-1HGQ9H1L0 117 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 KAT8Q9H7Z6 458 aaKnown RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 CHCHD3Q9NX63 227 aaKnown RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 VPS9D1Q9Y2B5 631 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 COL4A4P53420 1690 aaPredicted RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 SPEGQ15772 3267 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 SLC1A7O00341 560 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 PRAMEF4O60810 478 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 WDR47O94967 919 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 GP2P55259 537 aaKnown RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 PPP2R2BQ00005 443 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 BCL2L1Q07817 233 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 PRAMEF9Q5VWM5 478 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 DHRS4L2Q6PKH6 230 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ANGPTL8Q6UXH0 198 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 LRRC8DQ7L1W4 858 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 DCP2Q8IU60 420 aaKnown RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 MCOLN3Q8TDD5 553 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 BORCS5Q969J3 196 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 NODALQ96S42 347 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 RAD21L1Q9H4I0 556 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ELOVL6Q9H5J4 265 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 PSME2Q9UL46 239 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 TNPO3Q9Y5L0 923 aaKnown RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 SNX5Q9Y5X3 404 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 SZT2Q5T011 3432 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 SCN4AP35499 1836 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 M0R129 80 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 PRRG1O14668 218 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 SEC14L2O76054 403 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 PGLSO95336 258 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 COL6A1P12109 1028 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 EPORP19235 508 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 CCR7P32248 378 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ALDH7A1P49419 539 aaKnown RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 CLCN4P51793 760 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 NCS1P62166 190 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 EMX1Q04741 257 aaPredicted RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 GRIK2Q13002 908 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 PAGE2BQ5JRK9 111 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 DGKKQ5KSL6 1271 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ZDHHC21Q8IVQ6 265 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 ARL10Q8N8L6 244 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 PCSK9Q8NBP7 692 aaKnown RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 ST13P5Q8NFI4 369 aaPredicted RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 ZFP90Q8TF47 636 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP28-214ENST00000545540 TMEFF2Q9UIK5 374 aaPredicted RBP14.67□□□□□ -0.06
USP28-214ENST00000545540 ZNF510Q9Y2H8 683 aa14.67□□□□□ -0.06
USP28-214ENST00000545540 CFAP99D6REC4 459 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 TMEM189-UBE2V1I3L0A0 370 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 TULP3O75386 442 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 HALP42357 657 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 ISL1P61371 349 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 RPS14P62263 151 aaKnown RBP14.66□□□□□ -0.06
USP28-214ENST00000545540 RUNDC3AQ59EK9 446 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 ACBD5Q5T8D3 534 aaPredicted RBP14.66□□□□□ -0.06
USP28-214ENST00000545540 SCAMP4Q969E2 229 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 SPATA17Q96L03 361 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 CLSTN3Q9BQT9 956 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 CDH7Q9ULB5 785 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 CPQQ9Y646 472 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 NINQ8N4C6 2090 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 H0YAE9 185 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 ARNTLO00327 626 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 BCKDKO14874 412 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 PQBP1O60828 265 aaKnown RBP14.66□□□□□ -0.06
USP28-214ENST00000545540 INHBBP09529 407 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 ITGALP20701 1170 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 CD70P32970 193 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 MAGEA10P43363 369 aaPredicted RBP14.66□□□□□ -0.06
USP28-214ENST00000545540 BTG3Q14201 252 aaPredicted RBP14.66□□□□□ -0.06
USP28-214ENST00000545540 SYT16Q17RD7 645 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 PTCHD3Q3KNS1 767 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 GTF2IRD2BQ6EKJ0 949 aa14.66□□□□□ -0.06
USP28-214ENST00000545540 PRR23BQ6ZRT6 265 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms