RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 LYSMD1Q96S90 227 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 KRT12Q99456 494 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 KCNJ15Q99712 375 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 NUSAP1Q9BXS6 441 aaKnown RBP5.04□□□□□ -1.6
CLIP1-217ENST00000543205 TRABDQ9H4I3 376 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 RMI1Q9H9A7 625 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 EBF2Q9HAK2 575 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 TM9SF3Q9HD45 589 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 FZD3Q9NPG1 666 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 PKD2L2Q9NZM6 624 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 HACD3Q9P035 362 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 ASIC3Q9UHC3 531 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 SHOC2Q9UQ13 582 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 HS3ST3A1Q9Y663 406 aa5.04□□□□□ -1.6
CLIP1-217ENST00000543205 ARID1BQ8NFD5 2236 aaPredicted RBP5.04□□□□□ -1.6
CLIP1-217ENST00000543205 ZNF292O60281 2723 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 DCHS1Q96JQ0 3298 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 MED19A0JLT2 244 aaPredicted RBP5.03□□□□□ -1.6
CLIP1-217ENST00000543205 RGSL1A5PLK6 1076 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 C2orf81A6NN90 581 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 C10orf142B7Z368 130 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 AP3B1O00203 1094 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 SIGLEC6O43699 453 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 MAGEC1O60732 1142 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 SUN1O94901 812 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 MED26O95402 600 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 PRAMEF1O95521 474 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 PCCBP05166 539 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 TPH1P17752 444 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CD38P28907 300 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 TPP2P29144 1249 aaPredicted RBP5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CD97P48960 835 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CSNK1EP49674 416 aaKnown RBP5.03□□□□□ -1.6
CLIP1-217ENST00000543205 STC1P52823 247 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 SLC16A1P53985 500 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CLDN2P57739 230 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 PDE1BQ01064 536 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 MC1RQ01726 317 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CDH17Q12864 832 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 PTK6Q13882 451 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CDKN3Q16667 212 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 KCTD19Q17RG1 926 aaPredicted RBP5.03□□□□□ -1.6
CLIP1-217ENST00000543205 Q6ZVL8 140 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 DGLUCYQ7Z3D6 616 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 SZRD1Q7Z422 152 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 KLHDC8BQ8IXV7 354 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D21Q8IYX1 336 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 DENND6BQ8NEG7 585 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 OR52K1Q8NGK4 314 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 SLC35A4Q96G79 324 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 COQ10AQ96MF6 247 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 ACAT2Q9BWD1 397 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 EIF2B3Q9NR50 452 aaKnown RBP5.03□□□□□ -1.6
CLIP1-217ENST00000543205 SEMA3GQ9NS98 782 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 COQ3Q9NZJ6 369 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CD84Q9UIB8 345 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 SH3BGRL2Q9UJC5 107 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 CA5BQ9Y2D0 317 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 NEU2Q9Y3R4 380 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 PKP3Q9Y446 797 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 PCDHB1Q9Y5F3 818 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 EML5Q05BV3 1969 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 PLXND1Q9Y4D7 1925 aa5.03□□□□□ -1.6
CLIP1-217ENST00000543205 A0A1B0GVT2 93 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 CTAGE15A4D2H0 777 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 TLR4O00206 839 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 AURKAO14965 403 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 VILLO15195 856 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 RAD51BO15315 384 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 STX7O15400 261 aaKnown RBP5.02□□□□□ -1.61
CLIP1-217ENST00000543205 TTI1O43156 1089 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 LRP3O75074 770 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 SLC22A3O75751 556 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 SYPP08247 313 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 C1SP09871 688 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF806P0C7X5 589 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 CTAGE8P0CG41 777 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 TPSB2P20231 275 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 ATP5DP30049 168 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 TLX1P31314 330 aaPredicted RBP5.02□□□□□ -1.61
CLIP1-217ENST00000543205 HMGCLP35914 325 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 RABIFP47224 123 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 SPINT3P49223 89 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 ATXN3P54252 364 aaPredicted RBP5.02□□□□□ -1.61
CLIP1-217ENST00000543205 VAMP2P63027 116 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 CDK16Q00536 496 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 OVGP1Q12889 678 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 LAMB3Q13751 1172 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 EFR3AQ14156 821 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 IRF4Q15306 451 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 TAF1AQ15573 450 aaPredicted RBP5.02□□□□□ -1.61
CLIP1-217ENST00000543205 TPSAB1Q15661 275 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 TBCCQ15814 346 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 ZDHHC20Q5W0Z9 365 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 RAET1GQ6H3X3 334 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 PNCKQ6P2M8 343 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 SLC23A3Q6PIS1 610 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 GCNT7Q6ZNI0 430 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 Q6ZSR6 202 aa5.02□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF572Q7Z3I7 529 aaPredicted RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms