RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-209	ENST00000496445	SOX13	Q9UN79	622 aa		13.75	□□□□□ -0.21
VTI1A-209	ENST00000496445	RUVBL2	Q9Y230	463 aa	Known RBP	13.75	□□□□□ -0.21
VTI1A-209	ENST00000496445	NFS1	Q9Y697	457 aa		13.75	□□□□□ -0.21
VTI1A-209	ENST00000496445	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	AP3B1	O00203	1094 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	RASGRF2	O14827	1237 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	ZSCAN9	O15535	394 aa	Predicted RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	KDM1A	O60341	852 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	CNOT3	O75175	753 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	AVIL	O75366	819 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	KLF7	O75840	302 aa	Predicted RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	TMEM63A	O94886	807 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	VAPB	O95292	243 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	RPN2	P04844	631 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	CD9	P21926	228 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	MAGEA6	P43360	314 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	VPS41	P49754	854 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	EIF3B	P55884	814 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	CDK16	Q00536	496 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	TMED2	Q15363	201 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	TYSND1	Q2T9J0	566 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	PTRHD1	Q6GMV3	140 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	LRRC6	Q86X45	466 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	RASGEF1C	Q8N431	466 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	C2orf73	Q8N5S3	287 aa	Predicted RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	ZNF655	Q8N720	491 aa	Predicted RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	OR2L8	Q8NGY9	312 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	N4BP2L2	Q92802	583 aa	Predicted RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	PANX3	Q96QZ0	392 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	MLXIPL	Q9NP71	852 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	ACSS2	Q9NR19	701 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	HOMER3	Q9NSC5	361 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	DHCR7	Q9UBM7	475 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	PCDHGA9	Q9Y5G4	932 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	ANKRD12	Q6UB98	2062 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445	MAST4	O15021	2626 aa		13.74	□□□□□ -0.21
VTI1A-209	ENST00000496445		C9J4A7	227 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	NIPSNAP2	O75323	286 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	NDUFS3	O75489	264 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	CEACAM4	O75871	244 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	C1orf105	O95561	183 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	ITGAX	P20702	1163 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	CCL11	P51671	97 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	FOXL2	P58012	376 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	GPS1	Q13098	491 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	ATP1A4	Q13733	1029 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	GBX1	Q14549	363 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	SLC9A5	Q14940	896 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	PAPD7	Q5XG87	772 aa	Known RBP	13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	FCRL6	Q6DN72	434 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	CAND1	Q86VP6	1230 aa	Known RBP	13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	TMEM151B	Q8IW70	566 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	OTUD6B	Q8N6M0	293 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	PROKR1	Q8TCW9	393 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	DENND1A	Q8TEH3	1009 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	MIB2	Q96AX9	1013 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	MS4A14	Q96JA4	679 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	DHRS4	Q9BTZ2	278 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	SLC25A23	Q9BV35	468 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	IL1RAPL1	Q9NZN1	696 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	PLCL2	Q9UPR0	1127 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	PLAA	Q9Y263	795 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	AP1M2	Q9Y6Q5	423 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	DOPEY2	Q9Y3R5	2298 aa		13.73	□□□□□ -0.21
VTI1A-209	ENST00000496445	PRICKLE3	O43900	615 aa	Predicted RBP	13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	S1PR4	O95977	384 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	KRT14	P02533	472 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	F7	P08709	466 aa	Predicted RBP	13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	OGN	P20774	298 aa	Known RBP	13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	AGXT	P21549	392 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	PSMB5	P28074	263 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	FMO4	P31512	558 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	PGD	P52209	483 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	MLLT10	P55197	1068 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	MRPL14	Q6P1L8	145 aa	Known RBP	13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	TLDC1	Q6P9B6	456 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	CNST	Q6PJW8	725 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	OTOA	Q7RTW8	1153 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	TEX19	Q8NA77	164 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	NUDT9	Q9BW91	350 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	SLC22A11	Q9NSA0	550 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	EURL	Q9NYK6	297 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	GALP	Q9UBC7	116 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	TSR3	Q9UJK0	312 aa	Known RBP	13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	SRPK3	Q9UPE1	567 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	PADI2	Q9Y2J8	665 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	NEU2	Q9Y3R4	380 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445	SHANK1	Q9Y566	2161 aa		13.72	□□□□□ -0.21
VTI1A-209	ENST00000496445		A0A1W2PPV9	198 aa		13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	CYSRT1	A8MQ03	144 aa		13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	NRP2	O60462	931 aa		13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	OTX2	P32243	289 aa		13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	CD97	P48960	835 aa		13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	ADAR	P55265	1226 aa	Known RBP	13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	DCD	P81605	110 aa	Known RBP	13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	CYP1B1	Q16678	543 aa		13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	NADK2	Q4G0N4	442 aa		13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	13.71	□□□□□ -0.21
VTI1A-209	ENST00000496445	RNF187	Q5TA31	235 aa	Predicted RBP	13.71	□□□□□ -0.21

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