RNA–Protein interactions for RNA: ENST00000496375.1

CXCL12-208, Transcript of C-X-C motif chemokine ligand 12, human

TSL 5

Gene CXCL12, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CXCL12-208	ENST00000496375	FAM198B	Q6UWH4	519 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	SYTL1	Q8IYJ3	562 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	ADGRF3	Q8IZF5	1079 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	MMGT1	Q8N4V1	131 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	BBOF1	Q8ND07	529 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	ADAMTS17	Q8TE56	1095 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	ZNF592	Q92610	1267 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	LRRC39	Q96DD0	335 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	MFSD3	Q96ES6	412 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	NAT9	Q9BTE0	207 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	NLN	Q9BYT8	704 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	PHACTR1	Q9C0D0	580 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	MLXIPL	Q9NP71	852 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	SAMD15	Q9P1V8	674 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	SERTAD3	Q9UJW9	196 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	TCFL5	Q9UL49	500 aa		13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	PCDHGA9	Q9Y5G4	932 aa	Known RBP	13.91	□□□□□ -0.18
CXCL12-208	ENST00000496375	ZCWPW2	A0A1B0GU75	182 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	TTLL8	A6PVC2	850 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375		E7EQ34	232 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	QSOX1	O00391	747 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	AP2A2	O94973	939 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	CAPN1	P07384	714 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	NSG1	P42857	185 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	ITGA8	P53708	1063 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	ITGA1	P56199	1179 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	SEMA3A	Q14563	771 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	TYSND1	Q2T9J0	566 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	NADK2	Q4G0N4	442 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	ANKRD20A4	Q4UJ75	823 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	DNAJC21	Q5F1R6	531 aa	Known RBP	13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	AARS2	Q5JTZ9	985 aa	Known RBP	13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	SPESP1	Q6UW49	350 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	CDHR3	Q6ZTQ4	885 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	MNS1	Q8NEH6	495 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	OR5AR1	Q8NGP9	310 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	RAB17	Q9H0T7	212 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	CATSPERZ	Q9NTU4	200 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	GRHL1	Q9NZI5	618 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	ICK	Q9UPZ9	632 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	PRSS21	Q9Y6M0	314 aa		13.9	□□□□□ -0.18
CXCL12-208	ENST00000496375	PRRC2C	Q9Y520	2896 aa	Known RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	USP9X	Q93008	2570 aa	Predicted RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	LIN7A	O14910	233 aa	Predicted RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	ZNF749	O43361	778 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	VPS4B	O75351	444 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	TTC4	O95801	387 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	PGAM1	P18669	254 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	PAM	P19021	973 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	TTPA	P49638	278 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	DHX9	Q08211	1270 aa	Known RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	BRD3	Q15059	726 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	MSS51	Q4VC12	460 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	FASTKD1	Q53R41	847 aa	Known RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	TRIM73	Q86UV7	250 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	LMNTD2	Q8IXW0	634 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	PDIK1L	Q8N165	341 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	EFCAB3	Q8N7B9	438 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	OR6P1	Q8NGX9	317 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	CPT1C	Q8TCG5	803 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	ELMO1	Q92556	727 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	TCF12	Q99081	682 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	TTC1	Q99614	292 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	EBNA1BP2	Q99848	306 aa	Known RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	WDR83	Q9BRX9	315 aa	Known RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	MARCH4	Q9P2E8	410 aa	Predicted RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	ANAPC5	Q9UJX4	755 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	VPS4A	Q9UN37	437 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	ASF1A	Q9Y294	204 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	SNX24	Q9Y343	169 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	UTP11	Q9Y3A2	253 aa	Known RBP	13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	TEX264	Q9Y6I9	313 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	FAM169A	Q9Y6X4	670 aa		13.89	□□□□□ -0.19
CXCL12-208	ENST00000496375	UTP20	O75691	2785 aa	Known RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	USP9Y	O00507	2555 aa	Predicted RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	RP1L1	Q8IWN7	2480 aa	Predicted RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375		C9J4A7	227 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	CD3EAP	O15446	510 aa	Known RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	CEACAM4	O75871	244 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	VAPB	O95292	243 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	FTH1	P02794	183 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	UGT2B7	P16662	529 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	OGN	P20774	298 aa	Known RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	AGXT	P21549	392 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	SHMT2	P34897	504 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	PPARG	P37231	505 aa	Predicted RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	UQCRFS1	P47985	274 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	ADAR	P55265	1226 aa	Known RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	ARL4C	P56559	192 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	CAV1	Q03135	178 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	FRG1	Q14331	258 aa	Known RBP	13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	NCF4	Q15080	339 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	HIF1A	Q16665	826 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	SYTL3	Q4VX76	610 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	STEAP4	Q687X5	459 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	C8orf74	Q6P047	294 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	CASC4	Q6P4E1	433 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	NAPRT	Q6XQN6	538 aa		13.88	□□□□□ -0.19
CXCL12-208	ENST00000496375	UNC5A	Q6ZN44	842 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms