RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	TRIT1	Q9H3H1	467 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	PRMT8	Q9NR22	394 aa	Predicted RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	DNAJC11	Q9NVH1	559 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	APOBEC2	Q9Y235	224 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	EML5	Q05BV3	1969 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TRBV23OR9-2	A0A075B6M9	112 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TLR4	O00206	839 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	RPN2	P04844	631 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	PNLIPRP1	P54315	467 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TRAF3	Q13114	568 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TSTA3	Q13630	321 aa	Predicted RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	KRT33B	Q14525	404 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	RPE65	Q16518	533 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	KANK2	Q63ZY3	851 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TRPM8	Q7Z2W7	1104 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	WDR5B	Q86VZ2	330 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	SPATS2	Q86XZ4	545 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	OR56A3	Q8NH54	315 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	DNASE2B	Q8WZ79	361 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	LRRC37B	Q96QE4	947 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	NTMT1	Q9BV86	223 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	STN1	Q9H668	368 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	RNF11	Q9Y3C5	154 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	ABCA7	Q8IZY2	2146 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TECTA	O75443	2155 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	TRPC5OS	A6NMA1	111 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656		E7ENX8	843 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	DCTN3	O75935	186 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	CAPN1	P07384	714 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	CELA2B	P08218	269 aa	Predicted RBP	10.88	□□□□□ -0.67
APTX-223	ENST00000479656	UROS	P10746	265 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	CTSE	P14091	401 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	HAL	P42357	657 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	PIK3CG	P48736	1102 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	CSNK1E	P49674	416 aa	Known RBP	10.88	□□□□□ -0.67
APTX-223	ENST00000479656	TAP2	Q03519	686 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	ILF3	Q12906	894 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
APTX-223	ENST00000479656	C1orf61	Q13536	156 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	TCHHL1	Q5QJ38	904 aa	Predicted RBP	10.88	□□□□□ -0.67
APTX-223	ENST00000479656	SCIMP	Q6UWF3	145 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	SUSD1	Q6UWL2	747 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	WASH2P	Q6VEQ5	465 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	LPCAT2	Q7L5N7	544 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	IQCH	Q86VS3	1027 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	PARG	Q86W56	976 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	LONP2	Q86WA8	852 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	LRRC56	Q8IYG6	542 aa	Predicted RBP	10.88	□□□□□ -0.67
APTX-223	ENST00000479656	PHACTR4	Q8IZ21	702 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	KIRREL3	Q8IZU9	778 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	METTL6	Q8TCB7	284 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	GPBAR1	Q8TDU6	330 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	TWIST2	Q8WVJ9	160 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	CAMK1G	Q96NX5	476 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	OR4K3	Q96R72	315 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	TUBB1	Q9H4B7	451 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	WASH6P	Q9NQA3	447 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	LNPEP	Q9UIQ6	1025 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	BTRC	Q9Y297	605 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	STK38L	Q9Y2H1	464 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	PTGDR2	Q9Y5Y4	395 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	CACNA1I	Q9P0X4	2223 aa		10.88	□□□□□ -0.67
APTX-223	ENST00000479656	ATP6AP2	A0A1C7CYW4	349 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	SDHD	O14521	159 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PRAMEF4	O60810	478 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	ATP6AP2	O75787	350 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	CLDN9	O95484	217 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	LINC00032	P0C843	101 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	EBLN1	P0CF75	366 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	MTHFD1	P11586	935 aa	Known RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	HGF	P14210	728 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	JUND	P17535	347 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	BLK	P51451	505 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	LSM12	Q3MHD2	195 aa	Known RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	WDR45B	Q5MNZ6	344 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PRAMEF14	Q5SWL7	426 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PRAMEF9	Q5VWM5	478 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	NXN	Q6DKJ4	435 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	CAPN13	Q6MZZ7	669 aa	Predicted RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	TAF8	Q7Z7C8	310 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	MYLK4	Q86YV6	388 aa	Predicted RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	DDIAS	Q8IXT1	998 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	KLHDC8A	Q8IYD2	350 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	CCT6B	Q92526	530 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	SKA1	Q96BD8	255 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PRR11	Q96HE9	360 aa	Predicted RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	C3orf30	Q96M34	536 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	MENT	Q9BUN1	341 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	MYLK2	Q9H1R3	596 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	ACTR8	Q9H981	624 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	MEAF6	Q9HAF1	191 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	TCF7L2	Q9NQB0	619 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	ZNF624	Q9P2J8	865 aa	Predicted RBP	10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PCOLCE2	Q9UKZ9	415 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	CEP192	Q8TEP8	1941 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PLXND1	Q9Y4D7	1925 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656		E9PBE3	544 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	FCHO1	O14526	889 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	FFAR3	O14843	346 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	PIP5K1B	O14986	540 aa		10.87	□□□□□ -0.67
APTX-223	ENST00000479656	GPR42	O15529	346 aa		10.87	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms