RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	KLHL38	Q2WGJ6	581 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	MSS51	Q4VC12	460 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	ACSBG2	Q5FVE4	666 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	SPANXN3	Q5MJ09	141 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	ATP1A1-AS1	Q5TC04	95 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	CDHR3	Q6ZTQ4	885 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	ANKMY2	Q8IV38	441 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	OR8K5	Q8NH50	307 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	OR1L3	Q8NH93	324 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	CT55	Q8WUE5	264 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	SLC45A3	Q96JT2	553 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	NDN	Q99608	321 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	EBNA1BP2	Q99848	306 aa	Known RBP	14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	RAB11FIP5	Q9BXF6	653 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	PITPNM3	Q9BZ71	974 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	SEMA4C	Q9C0C4	833 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	DPH5	Q9H2P9	285 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	ACTR5	Q9H9F9	607 aa	Predicted RBP	14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	LHX9	Q9NQ69	397 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	ZC3H7B	Q9UGR2	993 aa	Known RBP	14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	SNX24	Q9Y343	169 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	FAM169A	Q9Y6X4	670 aa		14.3	□□□□□ -0.12
SSR4-208	ENST00000471880	CCDC88C	Q9P219	2028 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	ZNF462	Q96JM2	2506 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	VPS26A	O75436	327 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	HAUS5	O94927	633 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	C1orf105	O95561	183 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	TTC4	O95801	387 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	FAM87A	P0C7U9	286 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	F8A1	P23610	371 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	PEBP1	P30086	187 aa	Known RBP	14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	CCNF	P41002	786 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	ELK3	P41970	407 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	ITGA1	P56199	1179 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	MC1R	Q01726	317 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	CDC20	Q12834	499 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	DEFB109B	Q30KR1	87 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	CCSMST1	Q4G0I0	132 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	LMNTD2	Q8IXW0	634 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	OR2L8	Q8NGY9	312 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	SLC22A18	Q96BI1	424 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	TCTN2	Q96GX1	697 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	FCRL4	Q96PJ5	515 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	GPR21	Q99679	349 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	NAT9	Q9BTE0	207 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	SLC12A9	Q9BXP2	914 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	SYTL2	Q9HCH5	934 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	FAM60A	Q9NP50	221 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	INTS7	Q9NVH2	962 aa	Known RBP	14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	KCND3	Q9UK17	655 aa		14.29	□□□□□ -0.12
SSR4-208	ENST00000471880	CDC14C	A4D256	554 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	FANCG	O15287	622 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	OR2B3	O76000	313 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	CAT	P04040	527 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	MAG	P20916	626 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	ADAR	P55265	1226 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	RPS18	P62269	152 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	ETF1	P62495	437 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	RPS15	P62841	145 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	C19orf57	Q0VDD7	668 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	PDIA2	Q13087	525 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	CALCOCO2	Q13137	446 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	GPS2	Q13227	327 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	SLC5A12	Q1EHB4	618 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	HIBCH	Q6NVY1	386 aa	Predicted RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	BORA	Q6PGQ7	559 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	CAPN12	Q6ZSI9	719 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	IGDCC3	Q8IVU1	814 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	SPNS2	Q8IVW8	549 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	CPNE9	Q8IYJ1	553 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	LINC01555	Q8NAE3	123 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	CERS2	Q96G23	380 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	SLC30A3	Q99726	388 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	MIPEP	Q99797	713 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	ACAT2	Q9BWD1	397 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	HELZ2	Q9BYK8	2649 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	TWSG1	Q9GZX9	223 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	FAM114A2	Q9NRY5	505 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	SLC17A6	Q9P2U8	582 aa		14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	TRMT6	Q9UJA5	497 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	GCN1	Q92616	2671 aa	Known RBP	14.28	□□□□□ -0.12
SSR4-208	ENST00000471880	TK2	O00142	265 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	SMAP	O00193	183 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	ZNF749	O43361	778 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	SEC31A	O94979	1220 aa	Known RBP	14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	ITGB2	P05107	769 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	MCM3	P25205	808 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	IVD	P26440	423 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	PSMB5	P28074	263 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	OAS2	P29728	719 aa	Known RBP	14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	GRIA3	P42263	894 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	CCR10	P46092	362 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	RPL21	P46778	160 aa	Known RBP	14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	CLCN7	P51798	805 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	GRB7	Q14451	532 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	ZIC1	Q15915	447 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	PTCHD3	Q3KNS1	767 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	C1orf189	Q5VU69	101 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	ZNF549	Q6P9A3	640 aa		14.27	□□□□□ -0.13
SSR4-208	ENST00000471880	GPATCH11	Q8N954	259 aa		14.27	□□□□□ -0.13

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms