RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 MCM3P25205 808 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 PSMB5P28074 263 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 STAT5AP42229 794 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 CLCN7P51798 805 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 RHDQ02161 417 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 CKAP4Q07065 602 aaKnown RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 ABHD18Q0P651 414 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 GRB7Q14451 532 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 KIR2DS3Q14952 304 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 SF1Q15637 639 aaKnown RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 SOWAHCQ53LP3 525 aaPredicted RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 RBM20Q5T481 1227 aaKnown RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 FAM199XQ6PEV8 388 aaPredicted RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 CDHR3Q6ZTQ4 885 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 CCDC25Q86WR0 208 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 CARFQ8N187 725 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 C2CD4AQ8NCU7 369 aaPredicted RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 BBOF1Q8ND07 529 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 OR2L8Q8NGY9 312 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 EXTL1Q92935 676 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 MR1Q95460 341 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 WDR83Q9BRX9 315 aaKnown RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 ERP44Q9BS26 406 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 AARSD1Q9BTE6 412 aaKnown RBP18.04■□□□□ 0.48
USP39-209ENST00000458268 PITPNM3Q9BZ71 974 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 SPRY4Q9C004 299 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 SAYSD1Q9NPB0 183 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 SSUH2Q9Y2M2 353 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 MRFAP1Q9Y605 127 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 TEX264Q9Y6I9 313 aa18.04■□□□□ 0.48
USP39-209ENST00000458268 NDC80O14777 642 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 CPNE3O75131 537 aaKnown RBP18.03■□□□□ 0.48
USP39-209ENST00000458268 CATP04040 527 aaKnown RBP18.03■□□□□ 0.48
USP39-209ENST00000458268 PRB1P04280 392 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 CCNFP41002 786 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 LY6DQ14210 128 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 ZIC1Q15915 447 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 PIWIL4Q7Z3Z4 852 aaKnown RBP18.03■□□□□ 0.48
USP39-209ENST00000458268 MAGEC3Q8TD91 643 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 KCNJ9Q92806 393 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 INPP5DQ92835 1189 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 TRIM44Q96DX7 344 aaPredicted RBP18.03■□□□□ 0.48
USP39-209ENST00000458268 MIPEPQ99797 713 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 ACAT2Q9BWD1 397 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 RAB11FIP5Q9BXF6 653 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 FAM60AQ9NP50 221 aa18.03■□□□□ 0.48
USP39-209ENST00000458268 UTP11Q9Y3A2 253 aaKnown RBP18.03■□□□□ 0.48
USP39-209ENST00000458268 ANKRD12Q6UB98 2062 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 ZNF891A8MT65 544 aaPredicted RBP18.02■□□□□ 0.48
USP39-209ENST00000458268 ARHGEF33A8MVX0 844 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 NKX2-8O15522 239 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 MT-ND3P03897 115 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 TCN2P20062 427 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 ATP5DP30049 168 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 PGGT1BP53609 377 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 ITGA1P56199 1179 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 SLC5A12Q1EHB4 618 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.02■□□□□ 0.48
USP39-209ENST00000458268 ATP1A1-AS1Q5TC04 95 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 GPR135Q8IZ08 494 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 CD200R1Q8TD46 325 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 CT55Q8WUE5 264 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 STARD8Q92502 1023 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 LRRC39Q96DD0 335 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 ACTR5Q9H9F9 607 aaPredicted RBP18.02■□□□□ 0.48
USP39-209ENST00000458268 PLAC1Q9HBJ0 212 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 LHX9Q9NQ69 397 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 FAM114A2Q9NRY5 505 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 ZFATQ9P243 1243 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 SERTAD3Q9UJW9 196 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 PADI1Q9ULC6 663 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 MED16Q9Y2X0 877 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 DHRS7Q9Y394 339 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 COMMD10Q9Y6G5 202 aa18.02■□□□□ 0.48
USP39-209ENST00000458268 E7EQ34 232 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 F8A1P23610 371 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 GRIA3P42263 894 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 PLTPP55058 493 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 SLC7A5Q01650 507 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 PDAP1Q13442 181 aaKnown RBP18.01■□□□□ 0.47
USP39-209ENST00000458268 DNASE1L3Q13609 305 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 MAP7Q14244 749 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 FASTKQ14296 549 aaKnown RBP18.01■□□□□ 0.47
USP39-209ENST00000458268 GBX1Q14549 363 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 TEDDM1Q5T9Z0 273 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 C8orf74Q6P047 294 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 SUSD1Q6UWL2 747 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 BPHLQ86WA6 291 aaPredicted RBP18.01■□□□□ 0.47
USP39-209ENST00000458268 PPFIBP2Q8ND30 876 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 OR9A1PQ8NGU1 263 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 OR8K5Q8NH50 307 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 FLVCR1-AS1Q8TAF5 88 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 SLC39A7Q92504 469 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 SLC22A18Q96BI1 424 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 TCTN2Q96GX1 697 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 RUFY1Q96T51 708 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 MENTQ9BUN1 341 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 EFHD1Q9BUP0 239 aa18.01■□□□□ 0.47
USP39-209ENST00000458268 SPRTNQ9H040 489 aaPredicted RBP18.01■□□□□ 0.47
USP39-209ENST00000458268 RAB17Q9H0T7 212 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms