RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ZNF717Q9BY31 904 aaPredicted RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 KAT8Q9H7Z6 458 aaKnown RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CARS2Q9HA77 564 aaKnown RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 BPIFA1Q9NP55 256 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 SCUBE2Q9NQ36 999 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 MAT2BQ9NZL9 334 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 TPRKBQ9Y3C4 175 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 ARL5AQ9Y689 179 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 TRPM7Q96QT4 1865 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 TARM1B6A8C7 271 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CTDSP2O14595 271 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 SLC22A1O15245 554 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 ANXA9O76027 345 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 EOMESO95936 686 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 GADD45AP24522 165 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 ITGB8P26012 769 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 MAGEA12P43365 314 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 PPP5CP53041 499 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 E2F2Q14209 437 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CACTIN-AS1Q8N1I8 211 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 ELMOD1Q8N336 334 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 FLCNQ8NFG4 579 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 UHRF1Q96T88 793 aaPredicted RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 THG1LQ9NWX6 298 aaKnown RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 TAS2R16Q9NYV7 291 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 USE1Q9NZ43 259 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 TNFRSF10BO14763 440 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CPNE6O95741 557 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 B3GALT4O96024 378 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CST5P28325 142 aaPredicted RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 HERVK_113P63132 956 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 NKX3-2P78367 333 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 DSC1Q08554 894 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 SMARCB1Q12824 385 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 BCL7AQ4VC05 210 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 ZNF697Q5TEC3 545 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 SMYD5Q6GMV2 418 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 BLOC1S3Q6QNY0 202 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CYP2U1Q7Z449 544 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 TMEM179BQ7Z7N9 219 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 ISCA2Q86U28 154 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 OR52B6Q8NGF0 335 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CCDC120Q96HB5 630 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 TMEM169Q96HH4 297 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 DOCK6Q96HP0 2047 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 ERVK-6Q9BXR3 956 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 LRRC3Q9BY71 257 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 NTN4Q9HB63 628 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 CSNK1G1Q9HCP0 422 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 PDP1Q9P0J1 537 aaPredicted RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 NUFIP1Q9UHK0 495 aaKnown RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 INTS6Q9UL03 887 aaKnown RBP12.68□□□□□ -0.38
PTPRN-202ENST00000409251 OGDHLQ9ULD0 1010 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 PCDHB14Q9Y5E9 798 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 NINQ8N4C6 2090 aa12.68□□□□□ -0.38
PTPRN-202ENST00000409251 C2orf78A6NCI8 922 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 BBIP1A8MTZ0 92 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 C12orf71A8MTZ7 269 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 CBX4O00257 560 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 UPK1BO75841 260 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 COL6A1P12109 1028 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 BMP1P13497 986 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 HSD17B1P14061 328 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 ENDOUP21128 410 aaKnown RBP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 HTR6P50406 440 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 RUNDC3AQ59EK9 446 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 RBM48Q5RL73 367 aaKnown RBP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 ATAD3CQ5T2N8 411 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 PAQR3Q6TCH7 311 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 NRARPQ7Z6K4 114 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 WBP2Q969T9 261 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 PYCR2Q96C36 320 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 TRNT1Q96Q11 434 aaKnown RBP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 OR51E2Q9H255 320 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 GLOD4Q9HC38 313 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 OR6C70A6NIJ9 312 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 E5RI56 91 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 TNFRSF10AO00220 468 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 HOXC11O43248 304 aaPredicted RBP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 CRYZL1O95825 349 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 NTRK1P04629 796 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 SYN1P17600 705 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 GRSF1Q12849 480 aaKnown RBP eCLIP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 CDK5R2Q13319 367 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 CRY1Q16526 586 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 MAPKAPK3Q16644 382 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 TPGS1Q6ZTW0 290 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 SPRED2Q7Z698 418 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 MON1AQ86VX9 555 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 CYP4Z1Q86W10 505 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 SLC38A6Q8IZM9 456 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 SVOPQ8N4V2 548 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 MINDY1Q8N5J2 469 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 OR7G1Q8NGA0 311 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 REXO5Q96IC2 774 aaKnown RBP12.67□□□□□ -0.38
PTPRN-202ENST00000409251 B3GNT3Q9Y2A9 372 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 TESMINQ9Y4I5 508 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 IQCF5A8MTL0 148 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 SMLR1H3BR10 107 aa12.67□□□□□ -0.38
PTPRN-202ENST00000409251 CXCR2P25025 360 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms