RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DUSP16Q9BY84 665 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 FAM234AQ9H0X4 552 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CISHQ9NSE2 258 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SPHK1Q9NYA1 384 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 TMEM216Q9P0N5 145 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 APEX2Q9UBZ4 518 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 EVLQ9UI08 416 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 DGKBQ9Y6T7 804 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CCDC163A0A0D9SF12 145 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 TRIM64CA6NLI5 447 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CYTH3O43739 400 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ULK1O75385 1050 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 KRT36O76013 467 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 TXNDC12O95881 172 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 C4BPAP04003 597 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 MMP2P08253 660 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CYP3A4P08684 503 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 GDF1P27539 372 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 DLSTP36957 453 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 VASPP50552 380 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 ITGB3BPQ13352 177 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 CUL3Q13618 768 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ALG10BQ5I7T1 473 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ERMARDQ5T6L9 678 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 TMEM220Q6QAJ8 160 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ANKRD33Q7Z3H0 272 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 COX18Q8N8Q8 333 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SMG8Q8ND04 991 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 C1orf216Q8TAB5 229 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 FAM45AQ8TCE6 357 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ARRDC3Q96B67 414 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 NPAS2Q99743 824 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 OLFM1Q99784 485 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 HCAR1Q9BXC0 346 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 THUMPD1Q9NXG2 353 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 FAM198AQ9UFP1 575 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PAIP2BQ9ULR5 123 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 KCNS2Q9ULS6 477 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 UBIAD1Q9Y5Z9 338 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 A0A0D9SFI3 127 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 LOC100653049A0A140TA62 436 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 GPR89AB7ZAQ6 455 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ABCD4O14678 606 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RGS10O43665 173 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 KRT34O76011 436 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CPSF4O95639 269 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 IGKV5-2P06315 115 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 GPR89BP0CG08 455 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ERCC2P18074 760 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RPL10P27635 214 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 PTGER4P35408 488 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ASMTP46597 345 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 GDF10P55107 478 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ATP6V0D1P61421 351 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 STX3Q13277 289 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 TRIP13Q15645 432 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 CNGA2Q16280 664 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZSWIM7Q19AV6 140 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SLC35G1Q2M3R5 365 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 NOXRED1Q6NXP6 359 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 STOX1Q6ZVD7 989 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RIBC1Q8N443 379 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 UBTD2Q8WUN7 234 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZNF599Q96NL3 588 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 MMADHCQ9H3L0 296 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 ADAM30Q9UKF2 790 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 MGAT4AQ9UM21 535 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PROCRQ9UNN8 238 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CDYLQ9Y232 598 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PRELID3BQ9Y3B1 194 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CACNG2Q9Y698 323 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 MRPL42Q9Y6G3 142 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 SNAP23O00161 211 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SDC3O75056 442 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ITGB2P05107 769 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CD2P06729 351 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 LINGO3P0C6S8 592 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 POU3F2P20265 443 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 THBS2P35442 1172 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CCR8P51685 355 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZNF92Q03936 586 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 C1orf61Q13536 156 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 STXBP5Q5T5C0 1151 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 MAMDC4Q6UXC1 1216 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RANBP3LQ86VV4 465 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 LRRC8AQ8IWT6 810 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RNF175Q8N4F7 328 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SYT2Q8N9I0 419 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 UBASH3BQ8TF42 649 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SELENOMQ8WWX9 145 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 FIG4Q92562 907 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 HIC2Q96JB3 615 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZFRQ96KR1 1074 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 MCEEQ96PE7 176 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ELF4Q99607 663 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 CPVLQ9H3G5 476 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PRMT8Q9NR22 394 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 PIGVQ9NUD9 493 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ING3Q9NXR8 418 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RDH8Q9NYR8 311 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms