RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 SLC13A3Q8WWT9 602 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 RFKQ969G6 155 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 NKD1Q969G9 470 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 NUSAP1Q9BXS6 441 aaKnown RBP16.94■□□□□ 0.3
SHANK1-201ENST00000293441 COMMD4Q9H0A8 199 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 PPM1HQ9ULR3 514 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 ACADLP28330 430 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 CTU1Q7Z7A3 348 aaKnown RBP16.94■□□□□ 0.3
SHANK1-201ENST00000293441 IQCKQ8N0W5 287 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 OR10H4Q8NGA5 316 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 KXD1Q9BQD3 176 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 BCO2Q9BYV7 579 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 SNX7Q9UNH6 387 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 NID2Q14112 1375 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 UPK3BL1B0FP48 263 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 UPK3BL2E5RIL1 263 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 KLK1P06870 262 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 SLC7A1P30825 629 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 CHERPQ8IWX8 916 aaKnown RBP16.94■□□□□ 0.3
SHANK1-201ENST00000293441 FAM156AQ8NDB6 213 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 IL1RAPQ9NPH3 570 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 NKIRAS2Q9NYR9 191 aa16.94■□□□□ 0.3
SHANK1-201ENST00000293441 TCRBV7S3A2A0A539 114 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ERI3O43414 337 aaKnown RBP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ANGPTL1O95841 491 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 GPR68Q15743 365 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 SLC29A4Q7RTT9 530 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 MCFD2Q8NI22 146 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 HIST1H2AAQ96QV6 131 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 GSDMCQ9BYG8 508 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 TTYH3Q9C0H2 523 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 NFAT5O94916 1531 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 LEFTY2O00292 366 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 LDOC1O95751 146 aaPredicted RBP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 HERVK_113P63132 956 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 METTL21CQ5VZV1 264 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 CRELD2Q6UXH1 353 aaPredicted RBP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 NUDT13Q86X67 352 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 OR4E2Q8NGC2 313 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 CHID1Q9BWS9 393 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ERVK-6Q9BXR3 956 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 COQ4Q9Y3A0 265 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ELOA3DA6NLF2 546 aaPredicted RBP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ELOA3BQ3SY89 546 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 LCN1P1Q5VSP4 162 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ELOA3Q8NG57 546 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ROPN1LQ96C74 230 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 CDKN2AIPNLQ96HQ2 116 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 C8orf4Q9NR00 106 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 DGKBQ9Y6T7 804 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 CDC7O00311 574 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ETS2P15036 469 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ZNF598Q86UK7 904 aaKnown RBP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 SATL1Q86VE3 508 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ZNF280BQ86YH2 543 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 CLIP4Q8N3C7 705 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 HM13Q8TCT9 377 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 BTN3A3O00478 584 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 ECI2O75521 394 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 REM1O75628 298 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 GRIA1P42261 906 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 RAB25P57735 213 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 TARDBPQ13148 414 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 SCARB2Q14108 478 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 DRICH1Q6PGQ1 229 aaPredicted RBP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 C11orf24Q96F05 449 aaPredicted RBP16.93■□□□□ 0.3
SHANK1-201ENST00000293441 SMOC2Q9H3U7 446 aa16.93■□□□□ 0.3
SHANK1-201ENST00000293441 CCNHP51946 323 aaPredicted RBP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 CRISP3P54108 245 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 HADHBP55084 474 aaKnown RBP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 PUM1Q14671 1186 aaKnown RBP eCLIP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 LRRC66Q68CR7 880 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 ANO7Q6IWH7 933 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 LNX2Q8N448 690 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 OR5AK3PQ8NH89 298 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 NCSTNQ92542 709 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 LGALS13Q9UHV8 139 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 ACVR2AP27037 513 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 APLP1P51693 650 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 TOR1AIP1Q5JTV8 583 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 ZNF527Q8NB42 609 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 SMPD3Q9NY59 655 aaPredicted RBP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 ING4Q9UNL4 249 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 KCNK6Q9Y257 313 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 SLC22A14Q9Y267 594 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 SLC30A4O14863 429 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 TULP3O75386 442 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 POP7O75817 140 aaKnown RBP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 CYB5AP00167 134 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 PRDX6P30041 224 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 RPS9P46781 194 aaKnown RBP16.92■□□□□ 0.3
SHANK1-201ENST00000293441 MEIOBQ8N635 442 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 OR5M3Q8NGP4 307 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 RIT1Q92963 219 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 NSMCE3Q96MG7 304 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 POLE3Q9NRF9 147 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 VPS29Q9UBQ0 182 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 RENP00797 406 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 PFKMP08237 780 aa16.92■□□□□ 0.3
SHANK1-201ENST00000293441 HAPLN1P10915 354 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms