RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PDE3AQ14432 1141 aa23.67■■□□□ 1.38
CLN3-254ENST00000637050 UNC5CLQ8IV45 518 aa23.67■■□□□ 1.38
CLN3-254ENST00000637050 FRAT1Q92837 279 aaPredicted RBP23.67■■□□□ 1.38
CLN3-254ENST00000637050 NGLY1Q96IV0 654 aa23.67■■□□□ 1.38
CLN3-254ENST00000637050 C8orf37Q96NL8 207 aa23.67■■□□□ 1.38
CLN3-254ENST00000637050 SLC52A2Q9HAB3 445 aa23.67■■□□□ 1.38
CLN3-254ENST00000637050 BCL9LQ86UU0 1499 aa23.66■■□□□ 1.38
CLN3-254ENST00000637050 SOS1Q07889 1333 aaPredicted RBP23.66■■□□□ 1.38
CLN3-254ENST00000637050 FNBP4Q8N3X1 1017 aaPredicted RBP23.66■■□□□ 1.38
CLN3-254ENST00000637050 CANXP27824 592 aaKnown RBP23.65■■□□□ 1.38
CLN3-254ENST00000637050 EXOC6Q8TAG9 804 aa23.65■■□□□ 1.38
CLN3-254ENST00000637050 PPP4R2Q9NY27 417 aa23.65■■□□□ 1.38
CLN3-254ENST00000637050 KIF16BQ96L93 1317 aa23.64■■□□□ 1.38
CLN3-254ENST00000637050 CDCA7Q9BWT1 371 aaPredicted RBP23.64■■□□□ 1.38
CLN3-254ENST00000637050 MRPL50Q8N5N7 158 aaKnown RBP23.64■■□□□ 1.37
CLN3-254ENST00000637050 CRBNQ96SW2 442 aa23.64■■□□□ 1.37
CLN3-254ENST00000637050 EIF4A1P60842 406 aaKnown RBP23.63■■□□□ 1.37
CLN3-254ENST00000637050 ZKSCAN2Q63HK3 967 aa23.63■■□□□ 1.37
CLN3-254ENST00000637050 DDX54Q8TDD1 881 aaKnown RBP23.63■■□□□ 1.37
CLN3-254ENST00000637050 KCNQ3O43525 872 aa23.61■■□□□ 1.37
CLN3-254ENST00000637050 NFATC2IPQ8NCF5 419 aa23.61■■□□□ 1.37
CLN3-254ENST00000637050 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.61■■□□□ 1.37
CLN3-254ENST00000637050 VPS72Q15906 364 aa23.6■■□□□ 1.37
CLN3-254ENST00000637050 BARGINQ6ZT62 677 aa23.6■■□□□ 1.37
CLN3-254ENST00000637050 NOB1Q9ULX3 412 aaKnown RBP23.6■■□□□ 1.37
CLN3-254ENST00000637050 ERVV-2B6SEH9 535 aa23.6■■□□□ 1.37
CLN3-254ENST00000637050 IPO8O15397 1037 aaKnown RBP23.6■■□□□ 1.37
CLN3-254ENST00000637050 TNS2Q63HR2 1409 aa23.59■■□□□ 1.37
CLN3-254ENST00000637050 ATF7IPQ6VMQ6 1270 aa23.59■■□□□ 1.37
CLN3-254ENST00000637050 HEG1Q9ULI3 1381 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 EXOC5O00471 708 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 TCERG1O14776 1098 aaKnown RBP23.58■■□□□ 1.37
CLN3-254ENST00000637050 HOXB7P09629 217 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 MS4A1P11836 297 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 TRIM27P14373 513 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 CABP4P57796 275 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 PANK1Q8TE04 598 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 ARHGAP45Q92619 1136 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 TNNQ9UQP3 1299 aa23.58■■□□□ 1.37
CLN3-254ENST00000637050 CCDC9Q9Y3X0 531 aaKnown RBP23.58■■□□□ 1.37
CLN3-254ENST00000637050 RLBP1P12271 317 aa23.57■■□□□ 1.36
CLN3-254ENST00000637050 MEX3CQ5U5Q3 659 aaKnown RBP23.57■■□□□ 1.36
CLN3-254ENST00000637050 ZNF790Q6PG37 636 aa23.57■■□□□ 1.36
CLN3-254ENST00000637050 USP21Q9UK80 565 aa23.57■■□□□ 1.36
CLN3-254ENST00000637050 DZIP1LQ8IYY4 767 aaKnown RBP23.56■■□□□ 1.36
CLN3-254ENST00000637050 TOGARAM1Q9Y4F4 1720 aa23.55■■□□□ 1.36
CLN3-254ENST00000637050 CCDC30Q5VVM6 783 aa23.54■■□□□ 1.36
CLN3-254ENST00000637050 SLC39A6Q13433 755 aa23.54■■□□□ 1.36
CLN3-254ENST00000637050 CLUAP1Q96AJ1 413 aa23.54■■□□□ 1.36
CLN3-254ENST00000637050 DDB1Q16531 1140 aa23.53■■□□□ 1.36
CLN3-254ENST00000637050 COG6Q9Y2V7 657 aa23.53■■□□□ 1.36
CLN3-254ENST00000637050 GIGYF1O75420 1035 aaPredicted RBP23.52■■□□□ 1.36
CLN3-254ENST00000637050 FTSJ3Q8IY81 847 aaKnown RBP23.52■■□□□ 1.36
CLN3-254ENST00000637050 CHMP4AQ9BY43 222 aa23.52■■□□□ 1.36
CLN3-254ENST00000637050 SLC4A2P04920 1241 aa23.51■■□□□ 1.35
CLN3-254ENST00000637050 STK31Q9BXU1 1019 aa23.51■■□□□ 1.35
CLN3-254ENST00000637050 HDGFL1Q5TGJ6 251 aa23.51■■□□□ 1.35
CLN3-254ENST00000637050 AFF2P51816 1311 aa23.51■■□□□ 1.35
CLN3-254ENST00000637050 PAPPAQ13219 1627 aa23.5■■□□□ 1.35
CLN3-254ENST00000637050 B4GALNT3Q6L9W6 998 aa23.5■■□□□ 1.35
CLN3-254ENST00000637050 MVPQ14764 893 aaKnown RBP23.49■■□□□ 1.35
CLN3-254ENST00000637050 TTC5Q8N0Z6 440 aa23.49■■□□□ 1.35
CLN3-254ENST00000637050 API5Q9BZZ5 524 aaKnown RBP23.49■■□□□ 1.35
CLN3-254ENST00000637050 PTPRCP08575 1304 aa23.49■■□□□ 1.35
CLN3-254ENST00000637050 FAM98CQ17RN3 349 aaKnown RBP23.48■■□□□ 1.35
CLN3-254ENST00000637050 ZNF496Q96IT1 587 aaPredicted RBP23.48■■□□□ 1.35
CLN3-254ENST00000637050 CACNA1FO60840 1977 aa23.48■■□□□ 1.35
CLN3-254ENST00000637050 ABCC4O15439 1325 aa23.48■■□□□ 1.35
CLN3-254ENST00000637050 NECTIN2Q92692 538 aa23.48■■□□□ 1.35
CLN3-254ENST00000637050 CCDC136Q96JN2 1154 aa23.48■■□□□ 1.35
CLN3-254ENST00000637050 FMNL2Q96PY5 1086 aa23.47■■□□□ 1.35
CLN3-254ENST00000637050 TMOD3Q9NYL9 352 aa23.47■■□□□ 1.35
CLN3-254ENST00000637050 UBR2Q8IWV8 1755 aa23.47■■□□□ 1.35
CLN3-254ENST00000637050 RGS12O14924 1447 aa23.46■■□□□ 1.35
CLN3-254ENST00000637050 ATRNO75882 1429 aa23.46■■□□□ 1.35
CLN3-254ENST00000637050 EIF2S2P20042 333 aaKnown RBP23.46■■□□□ 1.35
CLN3-254ENST00000637050 AAMPQ13685 434 aa23.46■■□□□ 1.35
CLN3-254ENST00000637050 TMEM57Q8N5G2 664 aa23.46■■□□□ 1.35
CLN3-254ENST00000637050 GLI3P10071 1580 aa23.46■■□□□ 1.35
CLN3-254ENST00000637050 G2E3Q7L622 706 aa23.45■■□□□ 1.34
CLN3-254ENST00000637050 MARCH10Q8NA82 808 aaPredicted RBP23.45■■□□□ 1.34
CLN3-254ENST00000637050 ITGB4P16144 1822 aa23.45■■□□□ 1.34
CLN3-254ENST00000637050 C5P01031 1676 aa23.45■■□□□ 1.34
CLN3-254ENST00000637050 THSD7AQ9UPZ6 1657 aa23.45■■□□□ 1.34
CLN3-254ENST00000637050 PRAMEF22A3QJZ6 481 aa23.44■■□□□ 1.34
CLN3-254ENST00000637050 KCPQ6ZWJ8 1503 aa23.44■■□□□ 1.34
CLN3-254ENST00000637050 GJD4Q96KN9 370 aaPredicted RBP23.44■■□□□ 1.34
CLN3-254ENST00000637050 SNRPA1P09661 255 aaKnown RBP23.43■■□□□ 1.34
CLN3-254ENST00000637050 PIGBQ92521 554 aa23.43■■□□□ 1.34
CLN3-254ENST00000637050 TRPC5Q9UL62 973 aaPredicted RBP23.43■■□□□ 1.34
CLN3-254ENST00000637050 DDX19BQ9UMR2 479 aa23.43■■□□□ 1.34
CLN3-254ENST00000637050 BCL9O00512 1426 aa23.43■■□□□ 1.34
CLN3-254ENST00000637050 FLIIQ13045 1269 aa23.42■■□□□ 1.34
CLN3-254ENST00000637050 ITPRIPQ8IWB1 547 aa23.42■■□□□ 1.34
CLN3-254ENST00000637050 DOT1LQ8TEK3 1739 aa23.42■■□□□ 1.34
CLN3-254ENST00000637050 CHPF2Q9P2E5 772 aa23.42■■□□□ 1.34
CLN3-254ENST00000637050 DBF4Q9UBU7 674 aaPredicted RBP23.41■■□□□ 1.34
CLN3-254ENST00000637050 INTS3Q68E01 1043 aaKnown RBP23.39■■□□□ 1.34
CLN3-254ENST00000637050 LAMB4A4D0S4 1761 aa23.39■■□□□ 1.33
CLN3-254ENST00000637050 ONECUT3O60422 494 aaPredicted RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms