RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 PHF24Q9UPV7 400 aa3.05□□□□□ -1.92
SMARCB1-209ENST00000635578 C2CD2LO14523 706 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 GNB5O14775 395 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 CSB-PGBD3P0DP91 1061 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 HOXB4P17483 251 aaPredicted RBP3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 ERVK-9P63128 1117 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 CC2D2BQ6DHV5 1058 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 PGBD3Q8N328 593 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 GOLGA6L1Q8N7Z2 621 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 TRIM52Q96A61 297 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 CFHR5Q9BXR6 569 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 SLC24A3Q9HC58 644 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 PCDHB11Q9Y5F2 797 aa3.04□□□□□ -1.92
SMARCB1-209ENST00000635578 NEURL1BA8MQ27 555 aa3.03□□□□□ -1.92
SMARCB1-209ENST00000635578 SPATA31C2B4DYI2 1134 aa3.03□□□□□ -1.92
SMARCB1-209ENST00000635578 CTBSQ01459 385 aa3.03□□□□□ -1.92
SMARCB1-209ENST00000635578 SKIV2LQ15477 1246 aaKnown RBP3.03□□□□□ -1.92
SMARCB1-209ENST00000635578 WDR44Q5JSH3 913 aa3.03□□□□□ -1.92
SMARCB1-209ENST00000635578 SLCO4C1Q6ZQN7 724 aa3.03□□□□□ -1.92
SMARCB1-209ENST00000635578 BTBD6Q96KE9 485 aa3.03□□□□□ -1.92
SMARCB1-209ENST00000635578 A0A1B0GTH6 734 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 ZBBXA8MT70 800 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 PIK3R2O00459 728 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 FBXO45P0C2W1 286 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 EPXP11678 715 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 FGFR3P22607 806 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 MSX1P28360 303 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 DGKGP49619 791 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 GNASQ5JWF2 1037 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 LCE3BQ5TA77 95 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 TMEM214Q6NUQ4 689 aaKnown RBP3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 CNKSR1Q969H4 720 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 OSBPL3Q9H4L5 887 aa3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 NOP53Q9NZM5 478 aaKnown RBP3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 ATXN7L1Q9ULK2 861 aaPredicted RBP3.02□□□□□ -1.93
SMARCB1-209ENST00000635578 BNIP3LO60238 219 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 IL2RAP01589 272 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 GTF2E1P29083 439 aaPredicted RBP3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 GATA4P43694 442 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 CENPCQ03188 943 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 UBAP2LQ14157 1087 aaKnown RBP3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 FOXD4L6Q3SYB3 417 aaPredicted RBP3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 C4orf17Q53FE4 359 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 SH3D19Q5HYK7 790 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 EFHC2Q5JST6 749 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 FOXD4L3Q6VB84 417 aaPredicted RBP3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 RNF135Q8IUD6 432 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 ZSCAN10Q96SZ4 725 aaPredicted RBP3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 TRIM34Q9BYJ4 488 aa3.01□□□□□ -1.93
SMARCB1-209ENST00000635578 TRAK2O60296 914 aa3□□□□□ -1.93
SMARCB1-209ENST00000635578 RNF20Q5VTR2 975 aa3□□□□□ -1.93
SMARCB1-209ENST00000635578 CHSY3Q70JA7 882 aa3□□□□□ -1.93
SMARCB1-209ENST00000635578 ESYT1Q9BSJ8 1104 aa3□□□□□ -1.93
SMARCB1-209ENST00000635578 PLVAPQ9BX97 442 aa3□□□□□ -1.93
SMARCB1-209ENST00000635578 GPBP1L1Q9HC44 474 aaPredicted RBP3□□□□□ -1.93
SMARCB1-209ENST00000635578 DCDC2BA2VCK2 349 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 STAU1O95793 577 aaKnown RBP2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 MYCP01106 439 aaPredicted RBP2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 GNRH1P01148 92 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 ARAFP10398 606 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 CD33P20138 364 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 ADH6P28332 368 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 RFC5P40937 340 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 PLA2G4AP47712 749 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 PCBP4P57723 403 aaKnown RBP2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 LBRQ14739 615 aaKnown RBP2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 NBPF11Q86T75 865 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 TRIM11Q96F44 468 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 FAM117AQ9C073 453 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 ZFP64Q9NPA5 681 aa2.99□□□□□ -1.93
SMARCB1-209ENST00000635578 RSPO4Q2I0M5 234 aaPredicted RBP2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 TBC1D9Q6ZT07 1266 aa2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 CCDC125Q86Z20 511 aa2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 AIDAQ96BJ3 306 aa2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 KRTAP4-12Q9BQ66 201 aa2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 CDCA7Q9BWT1 371 aaPredicted RBP2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 ZCCHC2Q9C0B9 1178 aaKnown RBP2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 FHDC1Q9C0D6 1143 aaPredicted RBP2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 KDM4CQ9H3R0 1056 aa2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 TPSG1Q9NRR2 321 aa2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 NDFIP2Q9NV92 336 aa2.98□□□□□ -1.93
SMARCB1-209ENST00000635578 FAM229AH3BQW9 127 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 KHNYNO15037 678 aaKnown RBP2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 ATXN7O15265 892 aaPredicted RBP2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 DYRK3O43781 588 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 APBA3O96018 575 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 SPATA31C1P0DKV0 1188 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 TLR1Q15399 786 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 ARSJQ5FYB0 599 aaPredicted RBP2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 NKAPLQ5M9Q1 402 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 ARTNQ5T4W7 220 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 FIGNL1Q6PIW4 674 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 FCHSD1Q86WN1 690 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 RHBDD1Q8TEB9 315 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 XAGE2Q96GT9 111 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 DDRGK1Q96HY6 314 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 KLF15Q9UIH9 416 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 PRR12Q9ULL5 1215 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 PCDHGC4Q9Y5F7 938 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms