RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MARF1Q9Y4F3 1742 aaKnown RBP15.7■□□□□ 0.1
LINC00540-203ENST00000631321 PXDNLA1KZ92 1463 aa15.7■□□□□ 0.1
LINC00540-203ENST00000631321 NUCB2P80303 420 aa15.7■□□□□ 0.1
LINC00540-203ENST00000631321 CWC22Q9HCG8 908 aaKnown RBP15.7■□□□□ 0.1
LINC00540-203ENST00000631321 RRAGDQ9NQL2 400 aaPredicted RBP15.7■□□□□ 0.1
LINC00540-203ENST00000631321 RGPD8O14715 1765 aaPredicted RBP15.7■□□□□ 0.1
LINC00540-203ENST00000631321 BAG4O95429 457 aaKnown RBP15.69■□□□□ 0.1
LINC00540-203ENST00000631321 ATP8B2P98198 1209 aa15.69■□□□□ 0.1
LINC00540-203ENST00000631321 GOLGA6L22H0YM25 854 aa15.69■□□□□ 0.1
LINC00540-203ENST00000631321 ST18O60284 1047 aa15.69■□□□□ 0.1
LINC00540-203ENST00000631321 IL17REQ8NFR9 667 aa15.69■□□□□ 0.1
LINC00540-203ENST00000631321 ANO8Q9HCE9 1232 aaPredicted RBP15.69■□□□□ 0.1
LINC00540-203ENST00000631321 IBTKQ9P2D0 1353 aaPredicted RBP15.68■□□□□ 0.1
LINC00540-203ENST00000631321 TAF7Q15545 349 aaPredicted RBP15.68■□□□□ 0.1
LINC00540-203ENST00000631321 ARXQ96QS3 562 aa15.68■□□□□ 0.1
LINC00540-203ENST00000631321 FKBP5Q13451 457 aaPredicted RBP15.67■□□□□ 0.1
LINC00540-203ENST00000631321 KLHL40Q2TBA0 621 aa15.67■□□□□ 0.1
LINC00540-203ENST00000631321 LRRCC1Q9C099 1032 aa15.67■□□□□ 0.1
LINC00540-203ENST00000631321 N4BP2Q86UW6 1770 aaPredicted RBP15.67■□□□□ 0.1
LINC00540-203ENST00000631321 GAS2L3Q86XJ1 694 aa15.67■□□□□ 0.1
LINC00540-203ENST00000631321 STAP2Q9UGK3 403 aa15.67■□□□□ 0.1
LINC00540-203ENST00000631321 KCNA6P17658 529 aa15.66■□□□□ 0.1
LINC00540-203ENST00000631321 EXOC6BQ9Y2D4 811 aa15.66■□□□□ 0.1
LINC00540-203ENST00000631321 PNMA6EA0A0J9YXQ4 647 aa15.66■□□□□ 0.1
LINC00540-203ENST00000631321 IL17RAQ96F46 866 aa15.65■□□□□ 0.1
LINC00540-203ENST00000631321 AOX1Q06278 1338 aa15.65■□□□□ 0.1
LINC00540-203ENST00000631321 CACNA1FO60840 1977 aa15.65■□□□□ 0.1
LINC00540-203ENST00000631321 MX1P20591 662 aa15.65■□□□□ 0.1
LINC00540-203ENST00000631321 ESYT1Q9BSJ8 1104 aa15.65■□□□□ 0.1
LINC00540-203ENST00000631321 SRCIN1Q9C0H9 1055 aa15.65■□□□□ 0.1
LINC00540-203ENST00000631321 CEMIPQ8WUJ3 1361 aa15.65■□□□□ 0.1
LINC00540-203ENST00000631321 ABTB2Q8N961 1025 aa15.64■□□□□ 0.09
LINC00540-203ENST00000631321 TUBGCP6Q96RT7 1819 aa15.64■□□□□ 0.09
LINC00540-203ENST00000631321 USP44Q9H0E7 712 aa15.64■□□□□ 0.09
LINC00540-203ENST00000631321 LRRFIP2Q9Y608 721 aaKnown RBP15.63■□□□□ 0.09
LINC00540-203ENST00000631321 MED1Q15648 1581 aaPredicted RBP15.63■□□□□ 0.09
LINC00540-203ENST00000631321 FER1L4A9Z1Z3 1794 aa15.63■□□□□ 0.09
LINC00540-203ENST00000631321 SSH3Q8TE77 659 aa15.63■□□□□ 0.09
LINC00540-203ENST00000631321 CHMLP26374 656 aa15.62■□□□□ 0.09
LINC00540-203ENST00000631321 MCM2P49736 904 aa15.62■□□□□ 0.09
LINC00540-203ENST00000631321 ANAPC15P60006 121 aa15.62■□□□□ 0.09
LINC00540-203ENST00000631321 NUTM2GQ5VZR2 741 aa15.62■□□□□ 0.09
LINC00540-203ENST00000631321 EPB41L2O43491 1005 aaKnown RBP15.62■□□□□ 0.09
LINC00540-203ENST00000631321 HOXB7P09629 217 aa15.62■□□□□ 0.09
LINC00540-203ENST00000631321 IP6K1Q92551 441 aa15.62■□□□□ 0.09
LINC00540-203ENST00000631321 LMBRD1Q9NUN5 540 aa15.62■□□□□ 0.09
LINC00540-203ENST00000631321 DDX49Q9Y6V7 483 aaKnown RBP15.62■□□□□ 0.09
LINC00540-203ENST00000631321 CLCN1P35523 988 aa15.61■□□□□ 0.09
LINC00540-203ENST00000631321 HDGFL1Q5TGJ6 251 aa15.61■□□□□ 0.09
LINC00540-203ENST00000631321 ZGPATQ8N5A5 531 aaKnown RBP15.61■□□□□ 0.09
LINC00540-203ENST00000631321 NECTIN2Q92692 538 aa15.61■□□□□ 0.09
LINC00540-203ENST00000631321 NFAT5O94916 1531 aa15.61■□□□□ 0.09
LINC00540-203ENST00000631321 UBTFL1P0CB47 393 aaPredicted RBP15.6■□□□□ 0.09
LINC00540-203ENST00000631321 PKP1Q13835 747 aa15.6■□□□□ 0.09
LINC00540-203ENST00000631321 TSHZ3Q63HK5 1081 aa15.6■□□□□ 0.09
LINC00540-203ENST00000631321 ZDHHC9Q9Y397 364 aa15.6■□□□□ 0.09
LINC00540-203ENST00000631321 RAB11FIP3O75154 756 aa15.6■□□□□ 0.09
LINC00540-203ENST00000631321 ZNF445P59923 1031 aa15.6■□□□□ 0.09
LINC00540-203ENST00000631321 POLA2Q14181 598 aa15.6■□□□□ 0.09
LINC00540-203ENST00000631321 PHF8Q9UPP1 1060 aa15.6■□□□□ 0.09
LINC00540-203ENST00000631321 MCCP23508 829 aa15.59■□□□□ 0.09
LINC00540-203ENST00000631321 MCTP1Q6DN14 999 aa15.59■□□□□ 0.09
LINC00540-203ENST00000631321 LTV1Q96GA3 475 aaPredicted RBP15.59■□□□□ 0.09
LINC00540-203ENST00000631321 CUL4AQ13619 759 aa15.59■□□□□ 0.09
LINC00540-203ENST00000631321 CHMP4AQ9BY43 222 aa15.59■□□□□ 0.09
LINC00540-203ENST00000631321 EIF4A1P60842 406 aaKnown RBP15.58■□□□□ 0.09
LINC00540-203ENST00000631321 NEK4P51957 841 aa15.58■□□□□ 0.08
LINC00540-203ENST00000631321 PLPPR3Q6T4P5 718 aa15.58■□□□□ 0.08
LINC00540-203ENST00000631321 TMX3Q96JJ7 454 aa15.58■□□□□ 0.08
LINC00540-203ENST00000631321 PHAXQ9H814 394 aaKnown RBP15.58■□□□□ 0.08
LINC00540-203ENST00000631321 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.58■□□□□ 0.08
LINC00540-203ENST00000631321 USHBP1Q8N6Y0 703 aa15.57■□□□□ 0.08
LINC00540-203ENST00000631321 ADGRL3Q9HAR2 1447 aa15.57■□□□□ 0.08
LINC00540-203ENST00000631321 NBPF6Q5VWK0 638 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 INTS4Q96HW7 963 aaKnown RBP15.56■□□□□ 0.08
LINC00540-203ENST00000631321 NBPF4Q96M43 638 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 PALD1Q9ULE6 856 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 TRIM6-TRIM34B2RNG4 842 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 PPP1R42Q7Z4L9 355 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 UNC5CLQ8IV45 518 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 RILPL2Q969X0 211 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 PPP1R9BQ96SB3 815 aa15.56■□□□□ 0.08
LINC00540-203ENST00000631321 PHRF1Q9P1Y6 1649 aaKnown RBP15.56■□□□□ 0.08
LINC00540-203ENST00000631321 ANO2Q9NQ90 1003 aa15.55■□□□□ 0.08
LINC00540-203ENST00000631321 LTN1O94822 1766 aa15.55■□□□□ 0.08
LINC00540-203ENST00000631321 KDM3BQ7LBC6 1761 aa15.55■□□□□ 0.08
LINC00540-203ENST00000631321 ESPNB1AK53 854 aa15.55■□□□□ 0.08
LINC00540-203ENST00000631321 CCDC173Q0VFZ6 552 aa15.55■□□□□ 0.08
LINC00540-203ENST00000631321 BEND3Q5T5X7 828 aa15.55■□□□□ 0.08
LINC00540-203ENST00000631321 NCAPD2Q15021 1401 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 NASPP49321 788 aaPredicted RBP15.54■□□□□ 0.08
LINC00540-203ENST00000631321 ZSCAN23Q3MJ62 389 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 KCNH5Q8NCM2 988 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 RHPN1Q8TCX5 695 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 LGR6Q9HBX8 967 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 BRD1O95696 1058 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 AKAP4Q5JQC9 854 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 PI4K2BQ8TCG2 481 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 DNAAF4Q8WXU2 420 aa15.54■□□□□ 0.08
LINC00540-203ENST00000631321 KIF1BPQ96EK5 621 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms