RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TOGARAM1Q9Y4F4 1720 aa18.35■□□□□ 0.53
USP39-220ENST00000613444 UNC5CLQ8IV45 518 aa18.35■□□□□ 0.53
USP39-220ENST00000613444 SLC52A2Q9HAB3 445 aa18.35■□□□□ 0.53
USP39-220ENST00000613444 BTBD11A6QL63 1104 aa18.34■□□□□ 0.53
USP39-220ENST00000613444 KCNQ3O43525 872 aa18.34■□□□□ 0.53
USP39-220ENST00000613444 EXOC6Q8TAG9 804 aa18.34■□□□□ 0.53
USP39-220ENST00000613444 THRAP3Q9Y2W1 955 aaKnown RBP18.34■□□□□ 0.53
USP39-220ENST00000613444 PDE3AQ14432 1141 aa18.34■□□□□ 0.53
USP39-220ENST00000613444 MRPL50Q8N5N7 158 aaKnown RBP18.34■□□□□ 0.53
USP39-220ENST00000613444 FRAT1Q92837 279 aaPredicted RBP18.34■□□□□ 0.53
USP39-220ENST00000613444 NGLY1Q96IV0 654 aa18.34■□□□□ 0.53
USP39-220ENST00000613444 CACNA1FO60840 1977 aa18.34■□□□□ 0.53
USP39-220ENST00000613444 EIF4A1P60842 406 aaKnown RBP18.33■□□□□ 0.52
USP39-220ENST00000613444 CRBNQ96SW2 442 aa18.33■□□□□ 0.52
USP39-220ENST00000613444 TNNQ9UQP3 1299 aa18.33■□□□□ 0.52
USP39-220ENST00000613444 NFATC2IPQ8NCF5 419 aa18.32■□□□□ 0.52
USP39-220ENST00000613444 HEG1Q9ULI3 1381 aa18.32■□□□□ 0.52
USP39-220ENST00000613444 DDX54Q8TDD1 881 aaKnown RBP18.31■□□□□ 0.52
USP39-220ENST00000613444 PPP4R2Q9NY27 417 aa18.31■□□□□ 0.52
USP39-220ENST00000613444 NOB1Q9ULX3 412 aaKnown RBP18.31■□□□□ 0.52
USP39-220ENST00000613444 TNS2Q63HR2 1409 aa18.31■□□□□ 0.52
USP39-220ENST00000613444 SOS1Q07889 1333 aaPredicted RBP18.31■□□□□ 0.52
USP39-220ENST00000613444 VPS72Q15906 364 aa18.31■□□□□ 0.52
USP39-220ENST00000613444 KIF16BQ96L93 1317 aa18.3■□□□□ 0.52
USP39-220ENST00000613444 TCERG1O14776 1098 aaKnown RBP18.3■□□□□ 0.52
USP39-220ENST00000613444 RLBP1P12271 317 aa18.3■□□□□ 0.52
USP39-220ENST00000613444 ZKSCAN2Q63HK3 967 aa18.3■□□□□ 0.52
USP39-220ENST00000613444 BARGINQ6ZT62 677 aa18.3■□□□□ 0.52
USP39-220ENST00000613444 CDCA7Q9BWT1 371 aaPredicted RBP18.3■□□□□ 0.52
USP39-220ENST00000613444 ITGB4P16144 1822 aa18.3■□□□□ 0.52
USP39-220ENST00000613444 CANXP27824 592 aaKnown RBP18.3■□□□□ 0.52
USP39-220ENST00000613444 PANK1Q8TE04 598 aa18.3■□□□□ 0.52
USP39-220ENST00000613444 TRIM27P14373 513 aa18.29■□□□□ 0.52
USP39-220ENST00000613444 PAPPAQ13219 1627 aa18.29■□□□□ 0.52
USP39-220ENST00000613444 ERVV-2B6SEH9 535 aa18.28■□□□□ 0.52
USP39-220ENST00000613444 ATF7IPQ6VMQ6 1270 aa18.28■□□□□ 0.52
USP39-220ENST00000613444 UBR2Q8IWV8 1755 aa18.28■□□□□ 0.52
USP39-220ENST00000613444 GLI3P10071 1580 aa18.27■□□□□ 0.52
USP39-220ENST00000613444 EXOC5O00471 708 aa18.27■□□□□ 0.52
USP39-220ENST00000613444 ZNF790Q6PG37 636 aa18.27■□□□□ 0.52
USP39-220ENST00000613444 USP21Q9UK80 565 aa18.27■□□□□ 0.52
USP39-220ENST00000613444 C5P01031 1676 aa18.27■□□□□ 0.51
USP39-220ENST00000613444 HOXB7P09629 217 aa18.27■□□□□ 0.51
USP39-220ENST00000613444 SLC39A6Q13433 755 aa18.27■□□□□ 0.51
USP39-220ENST00000613444 ARHGAP45Q92619 1136 aa18.27■□□□□ 0.51
USP39-220ENST00000613444 CABP4P57796 275 aa18.26■□□□□ 0.51
USP39-220ENST00000613444 IPO8O15397 1037 aaKnown RBP18.25■□□□□ 0.51
USP39-220ENST00000613444 CLUAP1Q96AJ1 413 aa18.25■□□□□ 0.51
USP39-220ENST00000613444 CCDC9Q9Y3X0 531 aaKnown RBP18.25■□□□□ 0.51
USP39-220ENST00000613444 GIGYF1O75420 1035 aaPredicted RBP18.25■□□□□ 0.51
USP39-220ENST00000613444 DZIP1LQ8IYY4 767 aaKnown RBP18.25■□□□□ 0.51
USP39-220ENST00000613444 COG6Q9Y2V7 657 aa18.25■□□□□ 0.51
USP39-220ENST00000613444 MEX3CQ5U5Q3 659 aaKnown RBP18.24■□□□□ 0.51
USP39-220ENST00000613444 KAT6BQ8WYB5 2073 aa18.24■□□□□ 0.51
USP39-220ENST00000613444 RGS12O14924 1447 aa18.24■□□□□ 0.51
USP39-220ENST00000613444 DDB1Q16531 1140 aa18.24■□□□□ 0.51
USP39-220ENST00000613444 CCDC30Q5VVM6 783 aa18.24■□□□□ 0.51
USP39-220ENST00000613444 THSD7AQ9UPZ6 1657 aa18.24■□□□□ 0.51
USP39-220ENST00000613444 DOT1LQ8TEK3 1739 aa18.23■□□□□ 0.51
USP39-220ENST00000613444 AFF2P51816 1311 aa18.23■□□□□ 0.51
USP39-220ENST00000613444 SLC4A2P04920 1241 aa18.23■□□□□ 0.51
USP39-220ENST00000613444 B4GALNT3Q6L9W6 998 aa18.23■□□□□ 0.51
USP39-220ENST00000613444 MS4A1P11836 297 aa18.23■□□□□ 0.51
USP39-220ENST00000613444 PRAMEF22A3QJZ6 481 aa18.22■□□□□ 0.51
USP39-220ENST00000613444 FAM98CQ17RN3 349 aaKnown RBP18.22■□□□□ 0.51
USP39-220ENST00000613444 HDGFL1Q5TGJ6 251 aa18.22■□□□□ 0.51
USP39-220ENST00000613444 ZNF496Q96IT1 587 aaPredicted RBP18.22■□□□□ 0.51
USP39-220ENST00000613444 KCPQ6ZWJ8 1503 aa18.22■□□□□ 0.51
USP39-220ENST00000613444 ATRNO75882 1429 aa18.22■□□□□ 0.51
USP39-220ENST00000613444 G2E3Q7L622 706 aa18.21■□□□□ 0.51
USP39-220ENST00000613444 ABCC4O15439 1325 aa18.21■□□□□ 0.51
USP39-220ENST00000613444 MVPQ14764 893 aaKnown RBP18.21■□□□□ 0.51
USP39-220ENST00000613444 FTSJ3Q8IY81 847 aaKnown RBP18.21■□□□□ 0.51
USP39-220ENST00000613444 MARCH10Q8NA82 808 aaPredicted RBP18.21■□□□□ 0.51
USP39-220ENST00000613444 NECTIN2Q92692 538 aa18.21■□□□□ 0.51
USP39-220ENST00000613444 LAMB4A4D0S4 1761 aa18.2■□□□□ 0.5
USP39-220ENST00000613444 PTPRCP08575 1304 aa18.2■□□□□ 0.5
USP39-220ENST00000613444 TMEM57Q8N5G2 664 aa18.2■□□□□ 0.5
USP39-220ENST00000613444 STK31Q9BXU1 1019 aa18.2■□□□□ 0.5
USP39-220ENST00000613444 API5Q9BZZ5 524 aaKnown RBP18.19■□□□□ 0.5
USP39-220ENST00000613444 BCL9O00512 1426 aa18.19■□□□□ 0.5
USP39-220ENST00000613444 EIF2S2P20042 333 aaKnown RBP18.18■□□□□ 0.5
USP39-220ENST00000613444 TTC5Q8N0Z6 440 aa18.18■□□□□ 0.5
USP39-220ENST00000613444 PIGBQ92521 554 aa18.18■□□□□ 0.5
USP39-220ENST00000613444 GJD4Q96KN9 370 aaPredicted RBP18.18■□□□□ 0.5
USP39-220ENST00000613444 TMOD3Q9NYL9 352 aa18.18■□□□□ 0.5
USP39-220ENST00000613444 CCDC136Q96JN2 1154 aa18.17■□□□□ 0.5
USP39-220ENST00000613444 FMNL2Q96PY5 1086 aa18.17■□□□□ 0.5
USP39-220ENST00000613444 CHMP4AQ9BY43 222 aa18.17■□□□□ 0.5
USP39-220ENST00000613444 CHPF2Q9P2E5 772 aa18.17■□□□□ 0.5
USP39-220ENST00000613444 N4BP2Q86UW6 1770 aaPredicted RBP18.16■□□□□ 0.5
USP39-220ENST00000613444 FLIIQ13045 1269 aa18.16■□□□□ 0.5
USP39-220ENST00000613444 SNRPA1P09661 255 aaKnown RBP18.15■□□□□ 0.5
USP39-220ENST00000613444 TRPC5Q9UL62 973 aaPredicted RBP18.15■□□□□ 0.5
USP39-220ENST00000613444 ONECUT3O60422 494 aaPredicted RBP18.15■□□□□ 0.5
USP39-220ENST00000613444 AAMPQ13685 434 aa18.14■□□□□ 0.49
USP39-220ENST00000613444 PDIA6Q15084 440 aa18.14■□□□□ 0.49
USP39-220ENST00000613444 ITPRIPQ8IWB1 547 aa18.14■□□□□ 0.49
USP39-220ENST00000613444 PHAXQ9H814 394 aaKnown RBP18.14■□□□□ 0.49
USP39-220ENST00000613444 ATG3Q9NT62 314 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms