RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 DDX19BQ9UMR2 479 aa27.49■■□□□ 1.99
USP6NL-204ENST00000606752 KDM6AO15550 1401 aaPredicted RBP27.49■■□□□ 1.99
USP6NL-204ENST00000606752 CCDC30Q5VVM6 783 aa27.48■■□□□ 1.99
USP6NL-204ENST00000606752 SLC52A2Q9HAB3 445 aa27.48■■□□□ 1.99
USP6NL-204ENST00000606752 ADAMTS2O95450 1211 aa27.48■■□□□ 1.99
USP6NL-204ENST00000606752 SLC4A2P04920 1241 aa27.48■■□□□ 1.99
USP6NL-204ENST00000606752 ITPRIPQ8IWB1 547 aa27.48■■□□□ 1.99
USP6NL-204ENST00000606752 PCDH11XQ9BZA7 1347 aa27.48■■□□□ 1.99
USP6NL-204ENST00000606752 PCDH11YQ9BZA8 1340 aa27.48■■□□□ 1.99
USP6NL-204ENST00000606752 PARP4Q9UKK3 1724 aaKnown RBP27.47■■□□□ 1.99
USP6NL-204ENST00000606752 KCNQ3O43525 872 aa27.46■■□□□ 1.99
USP6NL-204ENST00000606752 HOXB7P09629 217 aa27.46■■□□□ 1.99
USP6NL-204ENST00000606752 STK31Q9BXU1 1019 aa27.46■■□□□ 1.99
USP6NL-204ENST00000606752 CHMP4AQ9BY43 222 aa27.46■■□□□ 1.99
USP6NL-204ENST00000606752 USP35Q9P2H5 1018 aa27.46■■□□□ 1.99
USP6NL-204ENST00000606752 ABCC4O15439 1325 aa27.45■■□□□ 1.98
USP6NL-204ENST00000606752 PTPRCP08575 1304 aa27.45■■□□□ 1.98
USP6NL-204ENST00000606752 NUTM2BA6NNL0 878 aaPredicted RBP27.44■■□□□ 1.98
USP6NL-204ENST00000606752 NUTM2EB1AL46 878 aaPredicted RBP27.44■■□□□ 1.98
USP6NL-204ENST00000606752 CENPQQ7L2Z9 268 aaPredicted RBP27.44■■□□□ 1.98
USP6NL-204ENST00000606752 NUTM2AQ8IVF1 878 aaPredicted RBP27.44■■□□□ 1.98
USP6NL-204ENST00000606752 KDM3BQ7LBC6 1761 aa27.44■■□□□ 1.98
USP6NL-204ENST00000606752 KDM2BQ8NHM5 1336 aa27.44■■□□□ 1.98
USP6NL-204ENST00000606752 NFATC2IPQ8NCF5 419 aa27.43■■□□□ 1.98
USP6NL-204ENST00000606752 VIRMAQ69YN4 1812 aaKnown RBP27.43■■□□□ 1.98
USP6NL-204ENST00000606752 SCN11AQ9UI33 1791 aa27.42■■□□□ 1.98
USP6NL-204ENST00000606752 NKX1-1Q15270 411 aaPredicted RBP27.41■■□□□ 1.98
USP6NL-204ENST00000606752 HDGFL1Q5TGJ6 251 aa27.41■■□□□ 1.98
USP6NL-204ENST00000606752 CHMP4BQ9H444 224 aaKnown RBP27.4■■□□□ 1.98
USP6NL-204ENST00000606752 SIPA1L3O60292 1781 aaPredicted RBP27.4■■□□□ 1.98
USP6NL-204ENST00000606752 HEG1Q9ULI3 1381 aa27.4■■□□□ 1.98
USP6NL-204ENST00000606752 JCADQ9P266 1359 aa27.39■■□□□ 1.98
USP6NL-204ENST00000606752 CABP4P57796 275 aa27.39■■□□□ 1.97
USP6NL-204ENST00000606752 ZNF790Q6PG37 636 aa27.39■■□□□ 1.97
USP6NL-204ENST00000606752 DDX54Q8TDD1 881 aaKnown RBP27.39■■□□□ 1.97
USP6NL-204ENST00000606752 NECTIN2Q92692 538 aa27.39■■□□□ 1.97
USP6NL-204ENST00000606752 PCDHB15Q9Y5E8 787 aa27.39■■□□□ 1.97
USP6NL-204ENST00000606752 MRC1P22897 1456 aa27.38■■□□□ 1.97
USP6NL-204ENST00000606752 ZBTB40Q9NUA8 1239 aa27.38■■□□□ 1.97
USP6NL-204ENST00000606752 GIGYF1O75420 1035 aaPredicted RBP27.37■■□□□ 1.97
USP6NL-204ENST00000606752 G2E3Q7L622 706 aa27.37■■□□□ 1.97
USP6NL-204ENST00000606752 ERVV-2B6SEH9 535 aa27.36■■□□□ 1.97
USP6NL-204ENST00000606752 ZBTB7BO15156 539 aaPredicted RBP27.36■■□□□ 1.97
USP6NL-204ENST00000606752 EIF2S2P20042 333 aaKnown RBP27.36■■□□□ 1.97
USP6NL-204ENST00000606752 INTS3Q68E01 1043 aaKnown RBP27.36■■□□□ 1.97
USP6NL-204ENST00000606752 DISP2A7MBM2 1401 aa27.35■■□□□ 1.97
USP6NL-204ENST00000606752 RGS12O14924 1447 aa27.35■■□□□ 1.97
USP6NL-204ENST00000606752 IGHDP01880 384 aa27.35■■□□□ 1.97
USP6NL-204ENST00000606752 SLC39A6Q13433 755 aa27.35■■□□□ 1.97
USP6NL-204ENST00000606752 FLIIQ13045 1269 aa27.34■■□□□ 1.97
USP6NL-204ENST00000606752 PLCH1Q4KWH8 1693 aa27.33■■□□□ 1.97
USP6NL-204ENST00000606752 THRAP3Q9Y2W1 955 aaKnown RBP27.32■■□□□ 1.96
USP6NL-204ENST00000606752 RWDD1Q9H446 243 aaPredicted RBP27.32■■□□□ 1.96
USP6NL-204ENST00000606752 SPATA31A1Q5TZJ5 1347 aa27.31■■□□□ 1.96
USP6NL-204ENST00000606752 SLIT2O94813 1529 aa27.31■■□□□ 1.96
USP6NL-204ENST00000606752 TTC5Q8N0Z6 440 aa27.31■■□□□ 1.96
USP6NL-204ENST00000606752 CDCA7Q9BWT1 371 aaPredicted RBP27.31■■□□□ 1.96
USP6NL-204ENST00000606752 CACNA1FO60840 1977 aa27.3■■□□□ 1.96
USP6NL-204ENST00000606752 FKBP5Q13451 457 aaPredicted RBP27.3■■□□□ 1.96
USP6NL-204ENST00000606752 SHANK3Q9BYB0 1731 aa27.29■■□□□ 1.96
USP6NL-204ENST00000606752 EXOC5O00471 708 aa27.29■■□□□ 1.96
USP6NL-204ENST00000606752 CHPF2Q9P2E5 772 aa27.29■■□□□ 1.96
USP6NL-204ENST00000606752 DBF4Q9UBU7 674 aaPredicted RBP27.29■■□□□ 1.96
USP6NL-204ENST00000606752 ZNF496Q96IT1 587 aaPredicted RBP27.28■■□□□ 1.96
USP6NL-204ENST00000606752 SPATA31A6Q5VVP1 1343 aa27.28■■□□□ 1.96
USP6NL-204ENST00000606752 NRAPQ86VF7 1730 aa27.28■■□□□ 1.96
USP6NL-204ENST00000606752 FMNL2Q96PY5 1086 aa27.27■■□□□ 1.96
USP6NL-204ENST00000606752 SPATA31A5Q5VU36 1347 aa27.27■■□□□ 1.96
USP6NL-204ENST00000606752 SPATA31A7Q8IWB4 1347 aa27.27■■□□□ 1.96
USP6NL-204ENST00000606752 PRAMEF22A3QJZ6 481 aa27.26■■□□□ 1.95
USP6NL-204ENST00000606752 F6X3S4 739 aa27.26■■□□□ 1.95
USP6NL-204ENST00000606752 CCT4P50991 539 aaKnown RBP27.26■■□□□ 1.95
USP6NL-204ENST00000606752 PHAXQ9H814 394 aaKnown RBP27.26■■□□□ 1.95
USP6NL-204ENST00000606752 NWD2Q9ULI1 1742 aa27.25■■□□□ 1.95
USP6NL-204ENST00000606752 HDAC1Q13547 482 aaPredicted RBP27.25■■□□□ 1.95
USP6NL-204ENST00000606752 UNC5CLQ8IV45 518 aa27.25■■□□□ 1.95
USP6NL-204ENST00000606752 NGLY1Q96IV0 654 aa27.25■■□□□ 1.95
USP6NL-204ENST00000606752 SNRPA1P09661 255 aaKnown RBP27.25■■□□□ 1.95
USP6NL-204ENST00000606752 SLC4A10Q6U841 1118 aa27.24■■□□□ 1.95
USP6NL-204ENST00000606752 TSHZ2Q9NRE2 1034 aa27.24■■□□□ 1.95
USP6NL-204ENST00000606752 C8orf37Q96NL8 207 aa27.23■■□□□ 1.95
USP6NL-204ENST00000606752 BARGINQ6ZT62 677 aa27.22■■□□□ 1.95
USP6NL-204ENST00000606752 CCDC9Q9Y3X0 531 aaKnown RBP27.22■■□□□ 1.95
USP6NL-204ENST00000606752 HSPA1LP34931 641 aa27.21■■□□□ 1.95
USP6NL-204ENST00000606752 FNBP4Q8N3X1 1017 aaPredicted RBP27.2■■□□□ 1.95
USP6NL-204ENST00000606752 DDX21Q9NR30 783 aaKnown RBP eCLIP27.2■■□□□ 1.95
USP6NL-204ENST00000606752 HYPKQ9NX55 129 aa27.2■■□□□ 1.95
USP6NL-204ENST00000606752 TMOD3Q9NYL9 352 aa27.2■■□□□ 1.95
USP6NL-204ENST00000606752 TNS2Q63HR2 1409 aa27.2■■□□□ 1.94
USP6NL-204ENST00000606752 ANXA1P04083 346 aa27.19■■□□□ 1.94
USP6NL-204ENST00000606752 DDB1Q16531 1140 aa27.18■■□□□ 1.94
USP6NL-204ENST00000606752 PROSER3Q2NL68 480 aa27.18■■□□□ 1.94
USP6NL-204ENST00000606752 C1orf115Q9H7X2 142 aa27.18■■□□□ 1.94
USP6NL-204ENST00000606752 BCL9LQ86UU0 1499 aa27.18■■□□□ 1.94
USP6NL-204ENST00000606752 PDIA6Q15084 440 aa27.17■■□□□ 1.94
USP6NL-204ENST00000606752 VPS72Q15906 364 aa27.17■■□□□ 1.94
USP6NL-204ENST00000606752 USP16Q9Y5T5 823 aa27.17■■□□□ 1.94
USP6NL-204ENST00000606752 SKAP1Q86WV1 359 aa27.16■■□□□ 1.94
USP6NL-204ENST00000606752 PXDNLA1KZ92 1463 aa27.16■■□□□ 1.94
USP6NL-204ENST00000606752 WNK3Q9BYP7 1800 aa27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms