RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 LUZP1Q86V48 1076 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 BANK1Q8NDB2 785 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 PRAM1Q96QH2 718 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 PLEKHO1Q53GL0 409 aaPredicted RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 MYL6BP14649 208 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 CWC27Q6UX04 472 aaKnown RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 ERBINQ96RT1 1412 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 FKBP4Q02790 459 aaKnown RBP eCLIP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 CHD1LQ86WJ1 897 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 CASTP20810 708 aaKnown RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 ZSCAN23Q3MJ62 389 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 NACAP1Q9BZK3 213 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 SETD1BQ9UPS6 1966 aaKnown RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 SNW1Q13573 536 aaKnown RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 MVPQ14764 893 aaKnown RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 DHX8Q14562 1220 aaKnown RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 CFAP70Q5T0N1 1121 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 JAKMIP1Q96N16 626 aaKnown RBP10.13□□□□□ -0.79
CSMD1-216ENST00000602557 HYPKQ9NX55 129 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 IVLP07476 585 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 IFFO1Q0D2I5 559 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 SULT6B1Q6IMI4 303 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 GOPCQ9HD26 462 aa10.13□□□□□ -0.79
CSMD1-216ENST00000602557 SYNJ1O43426 1573 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 CKAP2LQ8IYA6 745 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 SERPINA10Q9UK55 444 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 UBE4AQ14139 1066 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 ESCO1Q5FWF5 840 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 PIBF1Q8WXW3 757 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 PDRG1Q9NUG6 133 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 RNF216Q9NWF9 866 aaPredicted RBP10.12□□□□□ -0.79
CSMD1-216ENST00000602557 CCDC175P0C221 793 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 SSBP05455 408 aaKnown RBP eCLIP10.12□□□□□ -0.79
CSMD1-216ENST00000602557 MCM6Q14566 821 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 MSL1Q68DK7 614 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 KIF4BQ2VIQ3 1234 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 DACH1Q9UI36 760 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 KIF5CO60282 957 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 MAATS1Q7Z4T9 603 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 MPHOSPH10O00566 681 aaKnown RBP10.12□□□□□ -0.79
CSMD1-216ENST00000602557 ZNF530Q6P9A1 599 aaPredicted RBP10.12□□□□□ -0.79
CSMD1-216ENST00000602557 KRBA2Q6ZNG9 492 aa10.12□□□□□ -0.79
CSMD1-216ENST00000602557 A0A1B0GUL7 405 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 CLNS1AP54105 237 aaKnown RBP10.11□□□□□ -0.79
CSMD1-216ENST00000602557 FAM69CQ0P6D2 419 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 CCDC160A6NGH7 325 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 SSR1P43307 286 aaKnown RBP10.11□□□□□ -0.79
CSMD1-216ENST00000602557 CDKL5O76039 1030 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 CAPN2P17655 700 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 NOLC1Q14978 699 aaKnown RBP eCLIP10.11□□□□□ -0.79
CSMD1-216ENST00000602557 HSPA4P34932 840 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 WWC2Q6AWC2 1192 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 ATF7IPQ6VMQ6 1270 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 MPHOSPH8Q99549 860 aa10.11□□□□□ -0.79
CSMD1-216ENST00000602557 TIAM1Q13009 1591 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 BLOC1S2Q6QNY1 142 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 TMC6Q7Z403 805 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 SRGAP3O43295 1099 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 FERMT3Q86UX7 667 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 GDPD2Q9HCC8 539 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 VPS18Q9P253 973 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 ZSCAN12O43309 604 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 SPATA24Q86W54 205 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 WDR66Q8TBY9 1149 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 UBAC1Q9BSL1 405 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 SRCIN1Q9C0H9 1055 aa10.1□□□□□ -0.79
CSMD1-216ENST00000602557 TAF4BQ92750 862 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 KIF4AO95239 1232 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 AQRO60306 1485 aaKnown RBP eCLIP10.09□□□□□ -0.793e-7■■■■■ 34.7
CSMD1-216ENST00000602557 CDK19Q9BWU1 502 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 SLC12A5Q9H2X9 1139 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 CCDC57Q2TAC2 916 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 STAC3Q96MF2 364 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 OGFRQ9NZT2 677 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 NEBLO76041 1014 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 CABP4P57796 275 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 ARAP1Q96P48 1450 aa10.09□□□□□ -0.79
CSMD1-216ENST00000602557 CCDC184Q52MB2 194 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 NOL7Q9UMY1 257 aaKnown RBP10.08□□□□□ -0.8
CSMD1-216ENST00000602557 TMCO5BA8MYB1 307 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 ANKRD18AQ8IVF6 992 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 IGF1RP08069 1367 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 RBM5P52756 815 aaKnown RBP eCLIP10.08□□□□□ -0.8
CSMD1-216ENST00000602557 SYNJ2O15056 1496 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 KIAA1107Q9UPP5 1409 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 EFCAB5A4FU69 1503 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 POTEB2H3BUK9 544 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 CABP1Q9NZU7 370 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 MATR3P43243 847 aaKnown RBP eCLIP10.08□□□□□ -0.8
CSMD1-216ENST00000602557 TOP1P11387 765 aaKnown RBP10.08□□□□□ -0.8
CSMD1-216ENST00000602557 TXNDC2Q86VQ3 553 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 PPP1R1BQ9UD71 204 aaPredicted RBP10.08□□□□□ -0.8
CSMD1-216ENST00000602557 RRS1Q15050 365 aaKnown RBP10.08□□□□□ -0.8
CSMD1-216ENST00000602557 DNAJC21Q5F1R6 531 aaKnown RBP10.08□□□□□ -0.8
CSMD1-216ENST00000602557 PAXBP1Q9Y5B6 917 aa10.08□□□□□ -0.8
CSMD1-216ENST00000602557 EIF5P55010 431 aaKnown RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 WDR63Q8IWG1 891 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 CCDC85AQ96PX6 553 aaPredicted RBP10.07□□□□□ -0.8
CSMD1-216ENST00000602557 CCDC178Q5BJE1 867 aa10.07□□□□□ -0.8
CSMD1-216ENST00000602557 SOGA3Q5TF21 947 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms