RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, human

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HIF3A-219	ENST00000600879	HMGB2	P26583	209 aa	Known RBP	13.96	□□□□□ -0.17
HIF3A-219	ENST00000600879	JMY	Q8N9B5	988 aa		13.96	□□□□□ -0.17
HIF3A-219	ENST00000600879	RBM46	Q8TBY0	533 aa	Known RBP	13.96	□□□□□ -0.17
HIF3A-219	ENST00000600879	RRAGC	Q9HB90	399 aa		13.96	□□□□□ -0.17
HIF3A-219	ENST00000600879	FLT4	P35916	1363 aa		13.96	□□□□□ -0.18
HIF3A-219	ENST00000600879	EMILIN1	Q9Y6C2	1016 aa		13.95	□□□□□ -0.18
HIF3A-219	ENST00000600879	TONSL	Q96HA7	1378 aa		13.95	□□□□□ -0.18
HIF3A-219	ENST00000600879	PPM1G	O15355	546 aa	Predicted RBP	13.94	□□□□□ -0.18
HIF3A-219	ENST00000600879	PRELP	P51888	382 aa		13.94	□□□□□ -0.18
HIF3A-219	ENST00000600879	C10orf71	Q711Q0	1435 aa		13.94	□□□□□ -0.18
HIF3A-219	ENST00000600879	TMOD3	Q9NYL9	352 aa		13.94	□□□□□ -0.18
HIF3A-219	ENST00000600879	MAP2	P11137	1827 aa	Known RBP	13.94	□□□□□ -0.18
HIF3A-219	ENST00000600879	KCNA3	P22001	575 aa		13.93	□□□□□ -0.18
HIF3A-219	ENST00000600879	TGFB2	P61812	414 aa		13.93	□□□□□ -0.18
HIF3A-219	ENST00000600879	TMF1	P82094	1093 aa		13.93	□□□□□ -0.18
HIF3A-219	ENST00000600879	ATG3	Q9NT62	314 aa		13.93	□□□□□ -0.18
HIF3A-219	ENST00000600879	RNF181	Q9P0P0	153 aa		13.93	□□□□□ -0.18
HIF3A-219	ENST00000600879	PKD1L3	Q7Z443	1732 aa		13.93	□□□□□ -0.18
HIF3A-219	ENST00000600879	TRAPPC3L	Q5T215	181 aa		13.92	□□□□□ -0.18
HIF3A-219	ENST00000600879	ARHGEF1	Q92888	912 aa	Known RBP	13.92	□□□□□ -0.18
HIF3A-219	ENST00000600879	SLC4A9	Q96Q91	983 aa		13.92	□□□□□ -0.18
HIF3A-219	ENST00000600879	SPG7	Q9UQ90	795 aa		13.92	□□□□□ -0.18
HIF3A-219	ENST00000600879	PCNT	O95613	3336 aa		13.92	□□□□□ -0.18
HIF3A-219	ENST00000600879	CHRNA5	P30532	468 aa		13.91	□□□□□ -0.18
HIF3A-219	ENST00000600879	FSTL1	Q12841	308 aa		13.91	□□□□□ -0.18
HIF3A-219	ENST00000600879	NKX1-1	Q15270	411 aa	Predicted RBP	13.91	□□□□□ -0.18
HIF3A-219	ENST00000600879	CCDC87	Q9NVE4	849 aa		13.91	□□□□□ -0.18
HIF3A-219	ENST00000600879	KIF13B	Q9NQT8	1826 aa		13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	HSPA1A	P0DMV8	641 aa	Known RBP	13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	HSPA1B	P0DMV9	641 aa	Known RBP	13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	GYS1	P13807	737 aa		13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	RBM42	Q9BTD8	480 aa	Known RBP	13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	PCGF6	Q9BYE7	350 aa		13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	RTCB	Q9Y3I0	505 aa	Known RBP	13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	KIF20B	Q96Q89	1820 aa		13.9	□□□□□ -0.18
HIF3A-219	ENST00000600879	RASSF7	Q02833	373 aa		13.89	□□□□□ -0.19
HIF3A-219	ENST00000600879	NLGN1	Q8N2Q7	840 aa		13.89	□□□□□ -0.19
HIF3A-219	ENST00000600879	SRP68	Q9UHB9	627 aa	Known RBP	13.89	□□□□□ -0.19
HIF3A-219	ENST00000600879	PARP3	Q9Y6F1	533 aa		13.89	□□□□□ -0.19
HIF3A-219	ENST00000600879	C4A	P0C0L4	1744 aa		13.89	□□□□□ -0.19
HIF3A-219	ENST00000600879	KDM2B	Q8NHM5	1336 aa		13.89	□□□□□ -0.19
HIF3A-219	ENST00000600879	PHKG2	P15735	406 aa		13.88	□□□□□ -0.19
HIF3A-219	ENST00000600879	DCAF5	Q96JK2	942 aa		13.88	□□□□□ -0.19
HIF3A-219	ENST00000600879	KDR	P35968	1356 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	KIF24	Q5T7B8	1368 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	PLEKHG2	Q9H7P9	1386 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	RFC4	P35249	363 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	DDR1	Q08345	913 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	DALRD3	Q5D0E6	543 aa	Known RBP	13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	IFNL2	Q8IZJ0	200 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	EYA1	Q99502	592 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	PIM2	Q9P1W9	311 aa		13.87	□□□□□ -0.19
HIF3A-219	ENST00000600879	FKBP8	Q14318	412 aa		13.86	□□□□□ -0.19
HIF3A-219	ENST00000600879	SMC1B	Q8NDV3	1235 aa		13.86	□□□□□ -0.19
HIF3A-219	ENST00000600879	CARD14	Q9BXL6	1004 aa		13.86	□□□□□ -0.19
HIF3A-219	ENST00000600879	NCAPD2	Q15021	1401 aa		13.86	□□□□□ -0.19
HIF3A-219	ENST00000600879	BRCA1	P38398	1863 aa	Known RBP	13.85	□□□□□ -0.19
HIF3A-219	ENST00000600879	SLC24A1	O60721	1099 aa		13.83	□□□□□ -0.2
HIF3A-219	ENST00000600879	PTCD1	O75127	700 aa	Known RBP	13.83	□□□□□ -0.2
HIF3A-219	ENST00000600879	RPS6KA4	O75676	772 aa		13.83	□□□□□ -0.2
HIF3A-219	ENST00000600879	WASHC2A	Q641Q2	1341 aa		13.83	□□□□□ -0.2
HIF3A-219	ENST00000600879	TNNT2	P45379	298 aa	Predicted RBP	13.82	□□□□□ -0.2
HIF3A-219	ENST00000600879	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
HIF3A-219	ENST00000600879	CNTNAP4	Q9C0A0	1308 aa		13.82	□□□□□ -0.2
HIF3A-219	ENST00000600879	ADRA2B	P18089	450 aa		13.81	□□□□□ -0.2
HIF3A-219	ENST00000600879	ARFGEF1	Q9Y6D6	1849 aa		13.8	□□□□□ -0.2
HIF3A-219	ENST00000600879	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.8	□□□□□ -0.2
HIF3A-219	ENST00000600879	CRKL	P46109	303 aa	Known RBP	13.8	□□□□□ -0.2
HIF3A-219	ENST00000600879	EIF4A2	Q14240	407 aa	Known RBP	13.8	□□□□□ -0.2
HIF3A-219	ENST00000600879	RC3H1	Q5TC82	1133 aa	Known RBP	13.8	□□□□□ -0.2
HIF3A-219	ENST00000600879	MKRN1	Q9UHC7	482 aa	Known RBP	13.8	□□□□□ -0.2
HIF3A-219	ENST00000600879	COL5A3	P25940	1745 aa	Predicted RBP	13.79	□□□□□ -0.2
HIF3A-219	ENST00000600879	ANKRD26	Q9UPS8	1709 aa		13.79	□□□□□ -0.2
HIF3A-219	ENST00000600879	CABP4	P57796	275 aa		13.79	□□□□□ -0.2
HIF3A-219	ENST00000600879	POLK	Q9UBT6	870 aa		13.79	□□□□□ -0.2
HIF3A-219	ENST00000600879	USP42	Q9H9J4	1324 aa	Known RBP	13.79	□□□□□ -0.2
HIF3A-219	ENST00000600879	ERVV-2	B6SEH9	535 aa		13.78	□□□□□ -0.2
HIF3A-219	ENST00000600879	POLRMT	O00411	1230 aa	Known RBP	13.78	□□□□□ -0.2
HIF3A-219	ENST00000600879	VEGFA	P15692	232 aa	Predicted RBP	13.78	□□□□□ -0.2
HIF3A-219	ENST00000600879	CDCA8	Q53HL2	280 aa		13.78	□□□□□ -0.2
HIF3A-219	ENST00000600879	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.78	□□□□□ -0.2
HIF3A-219	ENST00000600879	KDM6A	O15550	1401 aa	Predicted RBP	13.78	□□□□□ -0.2
HIF3A-219	ENST00000600879	MYH14	Q7Z406	1995 aa	Known RBP	13.78	□□□□□ -0.2
HIF3A-219	ENST00000600879	GLTPD2	A6NH11	291 aa		13.77	□□□□□ -0.21
HIF3A-219	ENST00000600879	POTEC	B2RU33	542 aa		13.77	□□□□□ -0.21
HIF3A-219	ENST00000600879	USPL1	Q5W0Q7	1092 aa		13.77	□□□□□ -0.21
HIF3A-219	ENST00000600879	POLR3GL	Q9BT43	218 aa		13.77	□□□□□ -0.21
HIF3A-219	ENST00000600879	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.77	□□□□□ -0.21
HIF3A-219	ENST00000600879	SBF1	O95248	1867 aa		13.76	□□□□□ -0.21
HIF3A-219	ENST00000600879	FOXN1	O15353	648 aa		13.76	□□□□□ -0.21
HIF3A-219	ENST00000600879	POTEI	P0CG38	1075 aa		13.76	□□□□□ -0.21
HIF3A-219	ENST00000600879	POTEJ	P0CG39	1038 aa		13.76	□□□□□ -0.21
HIF3A-219	ENST00000600879	LMNB1	P20700	586 aa		13.76	□□□□□ -0.21
HIF3A-219	ENST00000600879	INTS5	Q6P9B9	1019 aa	Known RBP	13.76	□□□□□ -0.21
HIF3A-219	ENST00000600879	HSP90AB1	P08238	724 aa	Known RBP	13.75	□□□□□ -0.21
HIF3A-219	ENST00000600879	TM4SF1	P30408	202 aa		13.75	□□□□□ -0.21
HIF3A-219	ENST00000600879	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.75	□□□□□ -0.21
HIF3A-219	ENST00000600879	ZNF831	Q5JPB2	1677 aa		13.75	□□□□□ -0.21
HIF3A-219	ENST00000600879	NFKBIE	O00221	500 aa		13.74	□□□□□ -0.21
HIF3A-219	ENST00000600879	NFATC2IP	Q8NCF5	419 aa		13.74	□□□□□ -0.21

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