RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 YBX3P16989 372 aaKnown RBP eCLIP24.01■■□□□ 1.43
SHKBP1-223ENST00000600552 CNGB1Q14028 1251 aaPredicted RBP24■■□□□ 1.43
SHKBP1-223ENST00000600552 HSP90AB1P08238 724 aaKnown RBP23.98■■□□□ 1.43
SHKBP1-223ENST00000600552 CABP4P57796 275 aa23.98■■□□□ 1.43
SHKBP1-223ENST00000600552 SULT6B1Q6IMI4 303 aa23.98■■□□□ 1.43
SHKBP1-223ENST00000600552 UBR3Q6ZT12 1888 aa23.98■■□□□ 1.43
SHKBP1-223ENST00000600552 SSFA2P28290 1259 aa23.97■■□□□ 1.43
SHKBP1-223ENST00000600552 C1orf141Q5JVX7 400 aa23.97■■□□□ 1.43
SHKBP1-223ENST00000600552 DCAF5Q96JK2 942 aa23.97■■□□□ 1.43
SHKBP1-223ENST00000600552 CD2APQ9Y5K6 639 aa23.97■■□□□ 1.43
SHKBP1-223ENST00000600552 UTRNP46939 3433 aa23.96■■□□□ 1.43
SHKBP1-223ENST00000600552 ERVV-2B6SEH9 535 aa23.96■■□□□ 1.43
SHKBP1-223ENST00000600552 GRIN3BO60391 1043 aa23.96■■□□□ 1.43
SHKBP1-223ENST00000600552 MTHFSP49914 203 aa23.96■■□□□ 1.43
SHKBP1-223ENST00000600552 AMOTQ4VCS5 1084 aa23.96■■□□□ 1.43
SHKBP1-223ENST00000600552 KIF7Q2M1P5 1343 aa23.94■■□□□ 1.42
SHKBP1-223ENST00000600552 PTCD1O75127 700 aaKnown RBP23.92■■□□□ 1.42
SHKBP1-223ENST00000600552 CC2D1BQ5T0F9 858 aaKnown RBP23.92■■□□□ 1.42
SHKBP1-223ENST00000600552 TRAPPC3LQ5T215 181 aa23.92■■□□□ 1.42
SHKBP1-223ENST00000600552 SLC4A9Q96Q91 983 aa23.92■■□□□ 1.42
SHKBP1-223ENST00000600552 RTCBQ9Y3I0 505 aaKnown RBP23.92■■□□□ 1.42
SHKBP1-223ENST00000600552 IL13P35225 146 aa23.91■■□□□ 1.42
SHKBP1-223ENST00000600552 AMER1Q5JTC6 1135 aaPredicted RBP23.9■■□□□ 1.42
SHKBP1-223ENST00000600552 NFATC2IPQ8NCF5 419 aa23.9■■□□□ 1.42
SHKBP1-223ENST00000600552 KDM6AO15550 1401 aaPredicted RBP23.9■■□□□ 1.42
SHKBP1-223ENST00000600552 MMP10P09238 476 aa23.89■■□□□ 1.41
SHKBP1-223ENST00000600552 HMOX1P09601 288 aa23.88■■□□□ 1.41
SHKBP1-223ENST00000600552 SENP3-EIF4A1A0A087X0R7 540 aa23.86■■□□□ 1.41
SHKBP1-223ENST00000600552 GIGYF1O75420 1035 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-223ENST00000600552 RFC4P35249 363 aa23.86■■□□□ 1.41
SHKBP1-223ENST00000600552 C1QTNF8P60827 252 aa23.86■■□□□ 1.41
SHKBP1-223ENST00000600552 ARHGEF1Q92888 912 aaKnown RBP23.86■■□□□ 1.41
SHKBP1-223ENST00000600552 KDRP35968 1356 aa23.86■■□□□ 1.41
SHKBP1-223ENST00000600552 PLEKHG2Q9H7P9 1386 aa23.85■■□□□ 1.41
SHKBP1-223ENST00000600552 RC3H1Q5TC82 1133 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-223ENST00000600552 GOLGB1Q14789 3259 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-223ENST00000600552 RPS6KA4O75676 772 aa23.82■■□□□ 1.4
SHKBP1-223ENST00000600552 NLGN1Q8N2Q7 840 aa23.82■■□□□ 1.4
SHKBP1-223ENST00000600552 ZNF526Q8TF50 670 aaPredicted RBP23.82■■□□□ 1.4
SHKBP1-223ENST00000600552 LGR6Q9HBX8 967 aa23.82■■□□□ 1.4
SHKBP1-223ENST00000600552 AKAP4Q5JQC9 854 aa23.81■■□□□ 1.4
SHKBP1-223ENST00000600552 CNTNAP4Q9C0A0 1308 aa23.81■■□□□ 1.4
SHKBP1-223ENST00000600552 DIAPH1O60610 1272 aaKnown RBP23.8■■□□□ 1.4
SHKBP1-223ENST00000600552 CRKLP46109 303 aaKnown RBP23.8■■□□□ 1.4
SHKBP1-223ENST00000600552 ADRA2BP18089 450 aa23.79■■□□□ 1.4
SHKBP1-223ENST00000600552 SRP68Q9UHB9 627 aaKnown RBP23.79■■□□□ 1.4
SHKBP1-223ENST00000600552 PARP3Q9Y6F1 533 aa23.79■■□□□ 1.4
SHKBP1-223ENST00000600552 MYH14Q7Z406 1995 aaKnown RBP23.78■■□□□ 1.4
SHKBP1-223ENST00000600552 ATP10DQ9P241 1426 aa23.78■■□□□ 1.4
SHKBP1-223ENST00000600552 A0A0G2JLW4 131 aa23.78■■□□□ 1.4
SHKBP1-223ENST00000600552 PER1O15534 1290 aaPredicted RBP23.78■■□□□ 1.4
SHKBP1-223ENST00000600552 GYS1P13807 737 aa23.78■■□□□ 1.4
SHKBP1-223ENST00000600552 SLC39A6Q13433 755 aa23.78■■□□□ 1.4
SHKBP1-223ENST00000600552 COL5A3P25940 1745 aaPredicted RBP23.78■■□□□ 1.4
SHKBP1-223ENST00000600552 U2SURPO15042 1029 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-223ENST00000600552 CICQ96RK0 1608 aaPredicted RBP23.77■■□□□ 1.4
SHKBP1-223ENST00000600552 SCN11AQ9UI33 1791 aa23.76■■□□□ 1.39
SHKBP1-223ENST00000600552 RNMTO43148 476 aaKnown RBP23.76■■□□□ 1.39
SHKBP1-223ENST00000600552 MTHFSDQ2M296 383 aaKnown RBP23.76■■□□□ 1.39
SHKBP1-223ENST00000600552 DNAJC10Q8IXB1 793 aa23.76■■□□□ 1.39
SHKBP1-223ENST00000600552 SLC52A2Q9HAB3 445 aa23.76■■□□□ 1.39
SHKBP1-223ENST00000600552 CCDC87Q9NVE4 849 aa23.76■■□□□ 1.39
SHKBP1-223ENST00000600552 BCS1LQ9Y276 419 aa23.76■■□□□ 1.39
SHKBP1-223ENST00000600552 ZNF831Q5JPB2 1677 aa23.74■■□□□ 1.39
SHKBP1-223ENST00000600552 N4BP2Q86UW6 1770 aaPredicted RBP23.74■■□□□ 1.39
SHKBP1-223ENST00000600552 GPBP1L1Q9HC44 474 aaPredicted RBP23.74■■□□□ 1.39
SHKBP1-223ENST00000600552 DPEP1P16444 411 aa23.73■■□□□ 1.39
SHKBP1-223ENST00000600552 FKBP8Q14318 412 aa23.72■■□□□ 1.39
SHKBP1-223ENST00000600552 TGFB2P61812 414 aa23.71■■□□□ 1.39
SHKBP1-223ENST00000600552 INTS5Q6P9B9 1019 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-223ENST00000600552 ARHGAP27Q6ZUM4 889 aa23.71■■□□□ 1.39
SHKBP1-223ENST00000600552 PXDNLA1KZ92 1463 aa23.7■■□□□ 1.38
SHKBP1-223ENST00000600552 FCHSD2O94868 740 aa23.7■■□□□ 1.38
SHKBP1-223ENST00000600552 C4AP0C0L4 1744 aa23.7■■□□□ 1.38
SHKBP1-223ENST00000600552 TJP1Q07157 1748 aa23.7■■□□□ 1.38
SHKBP1-223ENST00000600552 ZPR1O75312 459 aa23.69■■□□□ 1.38
SHKBP1-223ENST00000600552 VIRMAQ69YN4 1812 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-223ENST00000600552 USP42Q9H9J4 1324 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-223ENST00000600552 USPL1Q5W0Q7 1092 aa23.68■■□□□ 1.38
SHKBP1-223ENST00000600552 C10orf71Q711Q0 1435 aa23.67■■□□□ 1.38
SHKBP1-223ENST00000600552 DDR1Q08345 913 aa23.66■■□□□ 1.38
SHKBP1-223ENST00000600552 CYP19A1P11511 503 aaPredicted RBP23.65■■□□□ 1.38
SHKBP1-223ENST00000600552 TTC5Q8N0Z6 440 aa23.65■■□□□ 1.38
SHKBP1-223ENST00000600552 KIF13BQ9NQT8 1826 aa23.65■■□□□ 1.38
SHKBP1-223ENST00000600552 CANXP27824 592 aaKnown RBP23.64■■□□□ 1.37
SHKBP1-223ENST00000600552 SOS1Q07889 1333 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-223ENST00000600552 TEFQ10587 303 aa23.63■■□□□ 1.37
SHKBP1-223ENST00000600552 ZBTB1Q9Y2K1 713 aa23.63■■□□□ 1.37
SHKBP1-223ENST00000600552 ADCY9O60503 1353 aa23.63■■□□□ 1.37
SHKBP1-223ENST00000600552 KIAA1551Q9HCM1 1747 aa23.62■■□□□ 1.37
SHKBP1-223ENST00000600552 CHRNA5P30532 468 aa23.62■■□□□ 1.37
SHKBP1-223ENST00000600552 CFAP53Q96M91 514 aa23.62■■□□□ 1.37
SHKBP1-223ENST00000600552 GNAT3A8MTJ3 354 aa23.61■■□□□ 1.37
SHKBP1-223ENST00000600552 GAS2L2Q8NHY3 880 aa23.61■■□□□ 1.37
SHKBP1-223ENST00000600552 PIM2Q9P1W9 311 aa23.61■■□□□ 1.37
SHKBP1-223ENST00000600552 ZNF330Q9Y3S2 320 aaPredicted RBP23.61■■□□□ 1.37
SHKBP1-223ENST00000600552 POLRMTO00411 1230 aaKnown RBP23.6■■□□□ 1.37
SHKBP1-223ENST00000600552 KCNA3P22001 575 aa23.6■■□□□ 1.37
SHKBP1-223ENST00000600552 IL17REQ8NFR9 667 aa23.6■■□□□ 1.37
SHKBP1-223ENST00000600552 NPC1L1Q9UHC9 1359 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms