RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 CD2APQ9Y5K6 639 aa15.54■□□□□ 0.08
HIF3A-217ENST00000600236 ITGB4P16144 1822 aa15.54■□□□□ 0.08
HIF3A-217ENST00000600236 MTHFSP49914 203 aa15.53■□□□□ 0.08
HIF3A-217ENST00000600236 AMER1Q5JTC6 1135 aaPredicted RBP15.53■□□□□ 0.08
HIF3A-217ENST00000600236 SULT6B1Q6IMI4 303 aa15.53■□□□□ 0.08
HIF3A-217ENST00000600236 ZNF784Q8NCA9 323 aaPredicted RBP15.53■□□□□ 0.08
HIF3A-217ENST00000600236 ITPK1Q13572 414 aa15.52■□□□□ 0.08
HIF3A-217ENST00000600236 AEBP1Q8IUX7 1158 aa15.52■□□□□ 0.08
HIF3A-217ENST00000600236 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
HIF3A-217ENST00000600236 KDRP35968 1356 aa15.51■□□□□ 0.07
HIF3A-217ENST00000600236 IL13P35225 146 aa15.51■□□□□ 0.07
HIF3A-217ENST00000600236 RTCBQ9Y3I0 505 aaKnown RBP15.51■□□□□ 0.07
HIF3A-217ENST00000600236 TAF1LQ8IZX4 1826 aa15.5■□□□□ 0.07
HIF3A-217ENST00000600236 KDM6AO15550 1401 aaPredicted RBP15.5■□□□□ 0.07
HIF3A-217ENST00000600236 TRAPPC3LQ5T215 181 aa15.49■□□□□ 0.07
HIF3A-217ENST00000600236 AMIGO3Q86WK7 504 aa15.49■□□□□ 0.07
HIF3A-217ENST00000600236 ADRA2BP18089 450 aa15.48■□□□□ 0.07
HIF3A-217ENST00000600236 AKAP4Q5JQC9 854 aa15.48■□□□□ 0.07
HIF3A-217ENST00000600236 CC2D1BQ5T0F9 858 aaKnown RBP15.48■□□□□ 0.07
HIF3A-217ENST00000600236 RC3H1Q5TC82 1133 aaKnown RBP15.48■□□□□ 0.07
HIF3A-217ENST00000600236 CNTNAP4Q9C0A0 1308 aa15.47■□□□□ 0.07
HIF3A-217ENST00000600236 PER1O15534 1290 aaPredicted RBP15.46■□□□□ 0.07
HIF3A-217ENST00000600236 DIAPH1O60610 1272 aaKnown RBP15.46■□□□□ 0.07
HIF3A-217ENST00000600236 YBX3P16989 372 aaKnown RBP eCLIP15.46■□□□□ 0.07
HIF3A-217ENST00000600236 SMIM5Q71RC9 77 aa15.46■□□□□ 0.07
HIF3A-217ENST00000600236 NFATC2IPQ8NCF5 419 aa15.46■□□□□ 0.07
HIF3A-217ENST00000600236 UBR3Q6ZT12 1888 aa15.46■□□□□ 0.06
HIF3A-217ENST00000600236 PTCD1O75127 700 aaKnown RBP15.45■□□□□ 0.06
HIF3A-217ENST00000600236 RFC4P35249 363 aa15.45■□□□□ 0.06
HIF3A-217ENST00000600236 NLGN1Q8N2Q7 840 aa15.45■□□□□ 0.06
HIF3A-217ENST00000600236 SLC4A9Q96Q91 983 aa15.45■□□□□ 0.06
HIF3A-217ENST00000600236 NPC1L1Q9UHC9 1359 aa15.45■□□□□ 0.06
HIF3A-217ENST00000600236 RPS6KA4O75676 772 aa15.44■□□□□ 0.06
HIF3A-217ENST00000600236 MMP10P09238 476 aa15.44■□□□□ 0.06
HIF3A-217ENST00000600236 HMOX1P09601 288 aa15.44■□□□□ 0.06
HIF3A-217ENST00000600236 ZNF831Q5JPB2 1677 aa15.44■□□□□ 0.06
HIF3A-217ENST00000600236 CHD4Q14839 1912 aa15.43■□□□□ 0.06
HIF3A-217ENST00000600236 ZEB1P37275 1124 aaPredicted RBP15.43■□□□□ 0.06
HIF3A-217ENST00000600236 ARHGEF1Q92888 912 aaKnown RBP15.43■□□□□ 0.06
HIF3A-217ENST00000600236 SLC52A2Q9HAB3 445 aa15.43■□□□□ 0.06
HIF3A-217ENST00000600236 GIGYF1O75420 1035 aaPredicted RBP15.41■□□□□ 0.06
HIF3A-217ENST00000600236 CCDC87Q9NVE4 849 aa15.41■□□□□ 0.06
HIF3A-217ENST00000600236 RNMTO43148 476 aaKnown RBP15.4■□□□□ 0.06
HIF3A-217ENST00000600236 CRKLP46109 303 aaKnown RBP15.4■□□□□ 0.06
HIF3A-217ENST00000600236 TGFB2P61812 414 aa15.4■□□□□ 0.06
HIF3A-217ENST00000600236 CNGB1Q14028 1251 aaPredicted RBP15.4■□□□□ 0.06
HIF3A-217ENST00000600236 PARP3Q9Y6F1 533 aa15.4■□□□□ 0.06
HIF3A-217ENST00000600236 U2SURPO15042 1029 aaKnown RBP15.39■□□□□ 0.05
HIF3A-217ENST00000600236 GYS1P13807 737 aa15.39■□□□□ 0.05
HIF3A-217ENST00000600236 MTHFSDQ2M296 383 aaKnown RBP15.39■□□□□ 0.05
HIF3A-217ENST00000600236 CFAP53Q96M91 514 aa15.39■□□□□ 0.05
HIF3A-217ENST00000600236 C1QTNF8P60827 252 aa15.38■□□□□ 0.05
HIF3A-217ENST00000600236 GAS2L2Q8NHY3 880 aa15.38■□□□□ 0.05
HIF3A-217ENST00000600236 LGR6Q9HBX8 967 aa15.38■□□□□ 0.05
HIF3A-217ENST00000600236 MRC1P22897 1456 aa15.38■□□□□ 0.05
HIF3A-217ENST00000600236 COL5A3P25940 1745 aaPredicted RBP15.37■□□□□ 0.05
HIF3A-217ENST00000600236 CICQ96RK0 1608 aaPredicted RBP15.37■□□□□ 0.05
HIF3A-217ENST00000600236 TTC5Q8N0Z6 440 aa15.37■□□□□ 0.05
HIF3A-217ENST00000600236 WWC3Q9ULE0 1092 aa15.37■□□□□ 0.05
HIF3A-217ENST00000600236 DNAJC10Q8IXB1 793 aa15.36■□□□□ 0.05
HIF3A-217ENST00000600236 USP42Q9H9J4 1324 aaKnown RBP15.36■□□□□ 0.05
HIF3A-217ENST00000600236 C10orf71Q711Q0 1435 aa15.35■□□□□ 0.05
HIF3A-217ENST00000600236 ATP10DQ9P241 1426 aa15.35■□□□□ 0.05
HIF3A-217ENST00000600236 ZPR1O75312 459 aa15.35■□□□□ 0.05
HIF3A-217ENST00000600236 VSIG10Q8N0Z9 540 aa15.35■□□□□ 0.05
HIF3A-217ENST00000600236 NUDCQ9Y266 331 aa15.35■□□□□ 0.05
HIF3A-217ENST00000600236 PXDNLA1KZ92 1463 aa15.34■□□□□ 0.05
HIF3A-217ENST00000600236 COL3A1P02461 1466 aaPredicted RBP15.34■□□□□ 0.05
HIF3A-217ENST00000600236 SCN11AQ9UI33 1791 aa15.34■□□□□ 0.05
HIF3A-217ENST00000600236 SENP3-EIF4A1A0A087X0R7 540 aa15.34■□□□□ 0.05
HIF3A-217ENST00000600236 GNAT3A8MTJ3 354 aa15.34■□□□□ 0.05
HIF3A-217ENST00000600236 TEFQ10587 303 aa15.34■□□□□ 0.05
HIF3A-217ENST00000600236 SLC39A6Q13433 755 aa15.34■□□□□ 0.05
HIF3A-217ENST00000600236 INTS5Q6P9B9 1019 aaKnown RBP15.34■□□□□ 0.05
HIF3A-217ENST00000600236 GPBP1L1Q9HC44 474 aaPredicted RBP15.34■□□□□ 0.05
HIF3A-217ENST00000600236 BCS1LQ9Y276 419 aa15.34■□□□□ 0.05
HIF3A-217ENST00000600236 SRP68Q9UHB9 627 aaKnown RBP15.33■□□□□ 0.04
HIF3A-217ENST00000600236 SOS1Q07889 1333 aaPredicted RBP15.33■□□□□ 0.04
HIF3A-217ENST00000600236 UTRNP46939 3433 aa15.33■□□□□ 0.04
HIF3A-217ENST00000600236 C4AP0C0L4 1744 aa15.32■□□□□ 0.04
HIF3A-217ENST00000600236 TJP1Q07157 1748 aa15.32■□□□□ 0.04
HIF3A-217ENST00000600236 A0A0G2JLW4 131 aa15.32■□□□□ 0.04
HIF3A-217ENST00000600236 CYP19A1P11511 503 aaPredicted RBP15.32■□□□□ 0.04
HIF3A-217ENST00000600236 FKBP8Q14318 412 aa15.32■□□□□ 0.04
HIF3A-217ENST00000600236 STARD3NLO95772 234 aa15.31■□□□□ 0.04
HIF3A-217ENST00000600236 DPEP1P16444 411 aa15.31■□□□□ 0.04
HIF3A-217ENST00000600236 ADCY9O60503 1353 aa15.31■□□□□ 0.04
HIF3A-217ENST00000600236 COL15A1P39059 1388 aa15.31■□□□□ 0.04
HIF3A-217ENST00000600236 KCPQ6ZWJ8 1503 aa15.31■□□□□ 0.04
HIF3A-217ENST00000600236 FCHSD2O94868 740 aa15.3■□□□□ 0.04
HIF3A-217ENST00000600236 PRKAR2BP31323 418 aa15.3■□□□□ 0.04
HIF3A-217ENST00000600236 USPL1Q5W0Q7 1092 aa15.3■□□□□ 0.04
HIF3A-217ENST00000600236 TEX13AQ9BXU3 409 aaPredicted RBP15.3■□□□□ 0.04
HIF3A-217ENST00000600236 PIM2Q9P1W9 311 aa15.3■□□□□ 0.04
HIF3A-217ENST00000600236 NARFQ9UHQ1 456 aa15.3■□□□□ 0.04
HIF3A-217ENST00000600236 ZBTB1Q9Y2K1 713 aa15.3■□□□□ 0.04
HIF3A-217ENST00000600236 ADAMTS7Q9UKP4 1686 aa15.29■□□□□ 0.04
HIF3A-217ENST00000600236 A0A087WZG4 1122 aa15.29■□□□□ 0.04
HIF3A-217ENST00000600236 NPM2Q86SE8 214 aaKnown RBP15.29■□□□□ 0.04
HIF3A-217ENST00000600236 POLRMTO00411 1230 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms