RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 HSP90AB1P08238 724 aaKnown RBP16.44■□□□□ 0.22
LIG1-217ENST00000599165 PPP2R1AP30153 589 aa16.44■□□□□ 0.22
LIG1-217ENST00000599165 SMIM5Q71RC9 77 aa16.44■□□□□ 0.22
LIG1-217ENST00000599165 CICQ96RK0 1608 aaPredicted RBP16.44■□□□□ 0.22
LIG1-217ENST00000599165 TJP1Q07157 1748 aa16.43■□□□□ 0.22
LIG1-217ENST00000599165 MTHFSDQ2M296 383 aaKnown RBP16.43■□□□□ 0.22
LIG1-217ENST00000599165 SLC16A10Q8TF71 515 aa16.42■□□□□ 0.22
LIG1-217ENST00000599165 PPP1R1BQ9UD71 204 aaPredicted RBP16.42■□□□□ 0.22
LIG1-217ENST00000599165 AKAP4Q5JQC9 854 aa16.41■□□□□ 0.22
LIG1-217ENST00000599165 C1orf141Q5JVX7 400 aa16.41■□□□□ 0.22
LIG1-217ENST00000599165 LGR6Q9HBX8 967 aa16.41■□□□□ 0.22
LIG1-217ENST00000599165 SIPA1L3O60292 1781 aaPredicted RBP16.41■□□□□ 0.22
LIG1-217ENST00000599165 NFATC2IPQ8NCF5 419 aa16.4■□□□□ 0.22
LIG1-217ENST00000599165 FHDC1Q9C0D6 1143 aaPredicted RBP16.4■□□□□ 0.22
LIG1-217ENST00000599165 CABP4P57796 275 aa16.39■□□□□ 0.21
LIG1-217ENST00000599165 ARXQ96QS3 562 aa16.39■□□□□ 0.21
LIG1-217ENST00000599165 SYT17Q9BSW7 474 aa16.39■□□□□ 0.21
LIG1-217ENST00000599165 MAP3K5Q99683 1374 aa16.38■□□□□ 0.21
LIG1-217ENST00000599165 UBR2Q8IWV8 1755 aa16.38■□□□□ 0.21
LIG1-217ENST00000599165 U2SURPO15042 1029 aaKnown RBP16.38■□□□□ 0.21
LIG1-217ENST00000599165 RNMTO43148 476 aaKnown RBP16.38■□□□□ 0.21
LIG1-217ENST00000599165 ATP6V1AP38606 617 aa16.38■□□□□ 0.21
LIG1-217ENST00000599165 RSPH6AQ9H0K4 717 aa16.38■□□□□ 0.21
LIG1-217ENST00000599165 KCPQ6ZWJ8 1503 aa16.38■□□□□ 0.21
LIG1-217ENST00000599165 C4AP0C0L4 1744 aa16.37■□□□□ 0.21
LIG1-217ENST00000599165 PHACTR3Q96KR7 559 aa16.37■□□□□ 0.21
LIG1-217ENST00000599165 SLC52A2Q9HAB3 445 aa16.37■□□□□ 0.21
LIG1-217ENST00000599165 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.36■□□□□ 0.21
LIG1-217ENST00000599165 MSL1Q68DK7 614 aa16.36■□□□□ 0.21
LIG1-217ENST00000599165 AK7Q96M32 723 aa16.36■□□□□ 0.21
LIG1-217ENST00000599165 RBM42Q9BTD8 480 aaKnown RBP16.35■□□□□ 0.21
LIG1-217ENST00000599165 UTRNP46939 3433 aa16.35■□□□□ 0.21
LIG1-217ENST00000599165 PHF14O94880 888 aa16.34■□□□□ 0.21
LIG1-217ENST00000599165 SSFA2P28290 1259 aa16.34■□□□□ 0.21
LIG1-217ENST00000599165 PRKAR2BP31323 418 aa16.34■□□□□ 0.21
LIG1-217ENST00000599165 IL17REQ8NFR9 667 aa16.34■□□□□ 0.21
LIG1-217ENST00000599165 GNPATO15228 680 aa16.33■□□□□ 0.2
LIG1-217ENST00000599165 MSH5O43196 834 aa16.33■□□□□ 0.2
LIG1-217ENST00000599165 PTCD1O75127 700 aaKnown RBP16.33■□□□□ 0.2
LIG1-217ENST00000599165 SLC39A6Q13433 755 aa16.33■□□□□ 0.2
LIG1-217ENST00000599165 FLAD1Q8NFF5 587 aa16.33■□□□□ 0.2
LIG1-217ENST00000599165 CFAP53Q96M91 514 aa16.33■□□□□ 0.2
LIG1-217ENST00000599165 CNTNAP4Q9C0A0 1308 aa16.33■□□□□ 0.2
LIG1-217ENST00000599165 CEMIPQ8WUJ3 1361 aa16.32■□□□□ 0.2
LIG1-217ENST00000599165 DLG5Q8TDM6 1919 aa16.31■□□□□ 0.2
LIG1-217ENST00000599165 HMGB2P26583 209 aaKnown RBP16.31■□□□□ 0.2
LIG1-217ENST00000599165 POLD1P28340 1107 aa16.31■□□□□ 0.2
LIG1-217ENST00000599165 RC3H1Q5TC82 1133 aaKnown RBP16.31■□□□□ 0.2
LIG1-217ENST00000599165 U2AF1L5P0DN76 240 aaPredicted RBP16.3■□□□□ 0.2
LIG1-217ENST00000599165 U2AF1Q01081 240 aaKnown RBP eCLIP16.3■□□□□ 0.2
LIG1-217ENST00000599165 DDX10Q13206 875 aaKnown RBP16.3■□□□□ 0.2
LIG1-217ENST00000599165 NLGN2Q8NFZ4 835 aa16.3■□□□□ 0.2
LIG1-217ENST00000599165 GAS2L2Q8NHY3 880 aa16.3■□□□□ 0.2
LIG1-217ENST00000599165 GNAT3A8MTJ3 354 aa16.29■□□□□ 0.2
LIG1-217ENST00000599165 INTS5Q6P9B9 1019 aaKnown RBP16.29■□□□□ 0.2
LIG1-217ENST00000599165 DNAJC10Q8IXB1 793 aa16.29■□□□□ 0.2
LIG1-217ENST00000599165 KIAA1551Q9HCM1 1747 aa16.28■□□□□ 0.2
LIG1-217ENST00000599165 RPS6KA4O75676 772 aa16.28■□□□□ 0.2
LIG1-217ENST00000599165 FCHSD2O94868 740 aa16.28■□□□□ 0.2
LIG1-217ENST00000599165 CRKLP46109 303 aaKnown RBP16.28■□□□□ 0.2
LIG1-217ENST00000599165 NUDCQ9Y266 331 aa16.28■□□□□ 0.2
LIG1-217ENST00000599165 KIF13BQ9NQT8 1826 aa16.28■□□□□ 0.2
LIG1-217ENST00000599165 ARHGEF1Q92888 912 aaKnown RBP16.27■□□□□ 0.2
LIG1-217ENST00000599165 RTCBQ9Y3I0 505 aaKnown RBP16.27■□□□□ 0.2
LIG1-217ENST00000599165 GOLGB1Q14789 3259 aaKnown RBP16.27■□□□□ 0.2
LIG1-217ENST00000599165 PLEKHF1Q96S99 279 aa16.26■□□□□ 0.19
LIG1-217ENST00000599165 CYP19A1P11511 503 aaPredicted RBP16.25■□□□□ 0.19
LIG1-217ENST00000599165 ADRA2BP18089 450 aa16.25■□□□□ 0.19
LIG1-217ENST00000599165 TRAPPC3LQ5T215 181 aa16.25■□□□□ 0.19
LIG1-217ENST00000599165 KLHL34Q8N239 644 aa16.25■□□□□ 0.19
LIG1-217ENST00000599165 CHD4Q14839 1912 aa16.25■□□□□ 0.19
LIG1-217ENST00000599165 KCNQ3O43525 872 aa16.24■□□□□ 0.19
LIG1-217ENST00000599165 GYS1P13807 737 aa16.24■□□□□ 0.19
LIG1-217ENST00000599165 ZNF496Q96IT1 587 aaPredicted RBP16.24■□□□□ 0.19
LIG1-217ENST00000599165 SOS1Q07889 1333 aaPredicted RBP16.23■□□□□ 0.19
LIG1-217ENST00000599165 RALBP1Q15311 655 aa16.23■□□□□ 0.19
LIG1-217ENST00000599165 ZNF790Q6PG37 636 aa16.23■□□□□ 0.19
LIG1-217ENST00000599165 SRP68Q9UHB9 627 aaKnown RBP16.23■□□□□ 0.19
LIG1-217ENST00000599165 DCTN1Q14203 1278 aa16.22■□□□□ 0.19
LIG1-217ENST00000599165 MCM10Q7L590 875 aa16.22■□□□□ 0.19
LIG1-217ENST00000599165 VSIG10Q8N0Z9 540 aa16.22■□□□□ 0.19
LIG1-217ENST00000599165 CCDC87Q9NVE4 849 aa16.22■□□□□ 0.19
LIG1-217ENST00000599165 ZBTB1Q9Y2K1 713 aa16.22■□□□□ 0.19
LIG1-217ENST00000599165 CD2APQ9Y5K6 639 aa16.22■□□□□ 0.19
LIG1-217ENST00000599165 HEG1Q9ULI3 1381 aa16.22■□□□□ 0.19
LIG1-217ENST00000599165 USP42Q9H9J4 1324 aaKnown RBP16.21■□□□□ 0.19
LIG1-217ENST00000599165 KDM3BQ7LBC6 1761 aa16.21■□□□□ 0.19
LIG1-217ENST00000599165 MMP10P09238 476 aa16.21■□□□□ 0.19
LIG1-217ENST00000599165 YBX3P16989 372 aaKnown RBP eCLIP16.21■□□□□ 0.19
LIG1-217ENST00000599165 TEFQ10587 303 aa16.21■□□□□ 0.19
LIG1-217ENST00000599165 N4BP2Q86UW6 1770 aaPredicted RBP16.2■□□□□ 0.18
LIG1-217ENST00000599165 C10orf71Q711Q0 1435 aa16.19■□□□□ 0.18
LIG1-217ENST00000599165 BRCA1P38398 1863 aaKnown RBP16.19■□□□□ 0.18
LIG1-217ENST00000599165 RFC4P35249 363 aa16.19■□□□□ 0.18
LIG1-217ENST00000599165 FKBP8Q14318 412 aa16.19■□□□□ 0.18
LIG1-217ENST00000599165 MYBBP1AQ9BQG0 1328 aaKnown RBP16.19■□□□□ 0.18
LIG1-217ENST00000599165 PXDNLA1KZ92 1463 aa16.18■□□□□ 0.18
LIG1-217ENST00000599165 COL15A1P39059 1388 aa16.18■□□□□ 0.18
LIG1-217ENST00000599165 AFDNP55196 1824 aaKnown RBP16.18■□□□□ 0.18
LIG1-217ENST00000599165 HTATSF1O43719 755 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms