RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	KDM6A	O15550	1401 aa	Predicted RBP	14.43	□□□□□ -0.1
LSM4-205	ENST00000597776	SSFA2	P28290	1259 aa		14.43	□□□□□ -0.1
LSM4-205	ENST00000597776	KDR	P35968	1356 aa		14.43	□□□□□ -0.1
LSM4-205	ENST00000597776	PLEKHG2	Q9H7P9	1386 aa		14.43	□□□□□ -0.1
LSM4-205	ENST00000597776	GRIN3B	O60391	1043 aa		14.42	□□□□□ -0.1
LSM4-205	ENST00000597776	ZNF530	Q6P9A1	599 aa	Predicted RBP	14.42	□□□□□ -0.1
LSM4-205	ENST00000597776	SLC4A9	Q96Q91	983 aa		14.42	□□□□□ -0.1
LSM4-205	ENST00000597776	WWC3	Q9ULE0	1092 aa		14.42	□□□□□ -0.1
LSM4-205	ENST00000597776	ERVV-2	B6SEH9	535 aa		14.41	□□□□□ -0.1
LSM4-205	ENST00000597776	PLEKHO1	Q53GL0	409 aa	Predicted RBP	14.41	□□□□□ -0.1
LSM4-205	ENST00000597776	DCAF5	Q96JK2	942 aa		14.41	□□□□□ -0.1
LSM4-205	ENST00000597776	RBM42	Q9BTD8	480 aa	Known RBP	14.41	□□□□□ -0.1
LSM4-205	ENST00000597776	KNSTRN	Q9Y448	316 aa		14.41	□□□□□ -0.1
LSM4-205	ENST00000597776	HSP90AB1	P08238	724 aa	Known RBP	14.4	□□□□□ -0.1
LSM4-205	ENST00000597776	C1QTNF8	P60827	252 aa		14.4	□□□□□ -0.1
LSM4-205	ENST00000597776	CABP4	P57796	275 aa		14.39	□□□□□ -0.11
LSM4-205	ENST00000597776	AMOT	Q4VCS5	1084 aa		14.39	□□□□□ -0.11
LSM4-205	ENST00000597776	SULT6B1	Q6IMI4	303 aa		14.39	□□□□□ -0.11
LSM4-205	ENST00000597776	IL13	P35225	146 aa		14.38	□□□□□ -0.11
LSM4-205	ENST00000597776	MTHFS	P49914	203 aa		14.38	□□□□□ -0.11
LSM4-205	ENST00000597776	AMER1	Q5JTC6	1135 aa	Predicted RBP	14.38	□□□□□ -0.11
LSM4-205	ENST00000597776	KIF7	Q2M1P5	1343 aa		14.38	□□□□□ -0.11
LSM4-205	ENST00000597776	ZNF831	Q5JPB2	1677 aa		14.37	□□□□□ -0.11
LSM4-205	ENST00000597776	SENP3-EIF4A1	A0A087X0R7	540 aa		14.37	□□□□□ -0.11
LSM4-205	ENST00000597776	GIGYF1	O75420	1035 aa	Predicted RBP	14.37	□□□□□ -0.11
LSM4-205	ENST00000597776	MMP10	P09238	476 aa		14.37	□□□□□ -0.11
LSM4-205	ENST00000597776	C1orf141	Q5JVX7	400 aa		14.37	□□□□□ -0.11
LSM4-205	ENST00000597776	RTCB	Q9Y3I0	505 aa	Known RBP	14.37	□□□□□ -0.11
LSM4-205	ENST00000597776	COL5A3	P25940	1745 aa	Predicted RBP	14.37	□□□□□ -0.11
LSM4-205	ENST00000597776	PTCD1	O75127	700 aa	Known RBP	14.36	□□□□□ -0.11
LSM4-205	ENST00000597776	CNTNAP4	Q9C0A0	1308 aa		14.36	□□□□□ -0.11
LSM4-205	ENST00000597776	ATP10D	Q9P241	1426 aa		14.35	□□□□□ -0.11
LSM4-205	ENST00000597776	CIC	Q96RK0	1608 aa	Predicted RBP	14.35	□□□□□ -0.11
LSM4-205	ENST00000597776	TRAPPC3L	Q5T215	181 aa		14.35	□□□□□ -0.11
LSM4-205	ENST00000597776	RC3H1	Q5TC82	1133 aa	Known RBP	14.35	□□□□□ -0.11
LSM4-205	ENST00000597776	NFATC2IP	Q8NCF5	419 aa		14.35	□□□□□ -0.11
LSM4-205	ENST00000597776	ARHGEF1	Q92888	912 aa	Known RBP	14.35	□□□□□ -0.11
LSM4-205	ENST00000597776	PXDNL	A1KZ92	1463 aa		14.33	□□□□□ -0.12
LSM4-205	ENST00000597776	C4A	P0C0L4	1744 aa		14.33	□□□□□ -0.12
LSM4-205	ENST00000597776	RPS6KA4	O75676	772 aa		14.33	□□□□□ -0.12
LSM4-205	ENST00000597776	MYH14	Q7Z406	1995 aa	Known RBP	14.33	□□□□□ -0.12
LSM4-205	ENST00000597776	TJP1	Q07157	1748 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	HMOX1	P09601	288 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	GYS1	P13807	737 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	ADRA2B	P18089	450 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	RFC4	P35249	363 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	CRKL	P46109	303 aa	Known RBP	14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	CC2D1B	Q5T0F9	858 aa	Known RBP	14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	NLGN1	Q8N2Q7	840 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	ZNF526	Q8TF50	670 aa	Predicted RBP	14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	ADCY9	O60503	1353 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	KIAA1551	Q9HCM1	1747 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	SCN11A	Q9UI33	1791 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	C10orf71	Q711Q0	1435 aa		14.32	□□□□□ -0.12
LSM4-205	ENST00000597776	SRP68	Q9UHB9	627 aa	Known RBP	14.31	□□□□□ -0.12
LSM4-205	ENST00000597776	KIF13B	Q9NQT8	1826 aa		14.31	□□□□□ -0.12
LSM4-205	ENST00000597776	N4BP2	Q86UW6	1770 aa	Predicted RBP	14.3	□□□□□ -0.12
LSM4-205	ENST00000597776		A0A0G2JLW4	131 aa		14.3	□□□□□ -0.12
LSM4-205	ENST00000597776	PER1	O15534	1290 aa	Predicted RBP	14.3	□□□□□ -0.12
LSM4-205	ENST00000597776	CNGB1	Q14028	1251 aa	Predicted RBP	14.3	□□□□□ -0.12
LSM4-205	ENST00000597776	AKAP4	Q5JQC9	854 aa		14.3	□□□□□ -0.12
LSM4-205	ENST00000597776	LGR6	Q9HBX8	967 aa		14.3	□□□□□ -0.12
LSM4-205	ENST00000597776	GPBP1L1	Q9HC44	474 aa	Predicted RBP	14.29	□□□□□ -0.12
LSM4-205	ENST00000597776	CEP350	Q5VT06	3117 aa		14.29	□□□□□ -0.12
LSM4-205	ENST00000597776	MRC1	P22897	1456 aa		14.28	□□□□□ -0.12
LSM4-205	ENST00000597776	FKBP8	Q14318	412 aa		14.28	□□□□□ -0.12
LSM4-205	ENST00000597776	INTS5	Q6P9B9	1019 aa	Known RBP	14.28	□□□□□ -0.12
LSM4-205	ENST00000597776	SLC52A2	Q9HAB3	445 aa		14.28	□□□□□ -0.12
LSM4-205	ENST00000597776	CCDC87	Q9NVE4	849 aa		14.28	□□□□□ -0.12
LSM4-205	ENST00000597776	PARP3	Q9Y6F1	533 aa		14.28	□□□□□ -0.12
LSM4-205	ENST00000597776	USP42	Q9H9J4	1324 aa	Known RBP	14.27	□□□□□ -0.12
LSM4-205	ENST00000597776	RNMT	O43148	476 aa	Known RBP	14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	DIAPH1	O60610	1272 aa	Known RBP	14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	DPEP1	P16444	411 aa		14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	TGFB2	P61812	414 aa		14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	SLC39A6	Q13433	755 aa		14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	MTHFSD	Q2M296	383 aa	Known RBP	14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	DNAJC10	Q8IXB1	793 aa		14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	BCS1L	Q9Y276	419 aa		14.27	□□□□□ -0.13
LSM4-205	ENST00000597776	DDR1	Q08345	913 aa		14.26	□□□□□ -0.13
LSM4-205	ENST00000597776	ADAMTS7	Q9UKP4	1686 aa		14.26	□□□□□ -0.13
LSM4-205	ENST00000597776	KCP	Q6ZWJ8	1503 aa		14.25	□□□□□ -0.13
LSM4-205	ENST00000597776	COL3A1	P02461	1466 aa	Predicted RBP	14.25	□□□□□ -0.13
LSM4-205	ENST00000597776	VIRMA	Q69YN4	1812 aa	Known RBP	14.25	□□□□□ -0.13
LSM4-205	ENST00000597776	FCHSD2	O94868	740 aa		14.24	□□□□□ -0.13
LSM4-205	ENST00000597776	CYP19A1	P11511	503 aa	Predicted RBP	14.24	□□□□□ -0.13
LSM4-205	ENST00000597776	SOS1	Q07889	1333 aa	Predicted RBP	14.23	□□□□□ -0.13
LSM4-205	ENST00000597776	U2SURP	O15042	1029 aa	Known RBP	14.23	□□□□□ -0.13
LSM4-205	ENST00000597776	KCNA3	P22001	575 aa		14.23	□□□□□ -0.13
LSM4-205	ENST00000597776	ARHGAP27	Q6ZUM4	889 aa		14.23	□□□□□ -0.13
LSM4-205	ENST00000597776	BRCA1	P38398	1863 aa	Known RBP	14.23	□□□□□ -0.13
LSM4-205	ENST00000597776	NPC1L1	Q9UHC9	1359 aa		14.22	□□□□□ -0.13
LSM4-205	ENST00000597776	USPL1	Q5W0Q7	1092 aa		14.22	□□□□□ -0.13
LSM4-205	ENST00000597776	ZBTB1	Q9Y2K1	713 aa		14.22	□□□□□ -0.13
LSM4-205	ENST00000597776	POLRMT	O00411	1230 aa	Known RBP	14.21	□□□□□ -0.13
LSM4-205	ENST00000597776	ZPR1	O75312	459 aa		14.21	□□□□□ -0.13
LSM4-205	ENST00000597776	TM4SF1	P30408	202 aa		14.21	□□□□□ -0.13
LSM4-205	ENST00000597776	CHRNA5	P30532	468 aa		14.21	□□□□□ -0.13
LSM4-205	ENST00000597776	COL15A1	P39059	1388 aa		14.21	□□□□□ -0.14
LSM4-205	ENST00000597776	UBR2	Q8IWV8	1755 aa		14.2	□□□□□ -0.14

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