RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 DISP2A7MBM2 1401 aa16.97■□□□□ 0.31
VRK3-205ENST00000593919 ALDH1L2Q3SY69 923 aa16.97■□□□□ 0.31
VRK3-205ENST00000593919 CANXP27824 592 aaKnown RBP16.96■□□□□ 0.31
VRK3-205ENST00000593919 C8orf37Q96NL8 207 aa16.96■□□□□ 0.31
VRK3-205ENST00000593919 MRC1P22897 1456 aa16.95■□□□□ 0.3
VRK3-205ENST00000593919 DCAF5Q96JK2 942 aa16.95■□□□□ 0.3
VRK3-205ENST00000593919 SPATA31A1Q5TZJ5 1347 aa16.94■□□□□ 0.3
VRK3-205ENST00000593919 BTBD11A6QL63 1104 aa16.94■□□□□ 0.3
VRK3-205ENST00000593919 HSP90AB1P08238 724 aaKnown RBP16.94■□□□□ 0.3
VRK3-205ENST00000593919 NGLY1Q96IV0 654 aa16.93■□□□□ 0.3
VRK3-205ENST00000593919 CRBNQ96SW2 442 aa16.93■□□□□ 0.3
VRK3-205ENST00000593919 BCL9LQ86UU0 1499 aa16.93■□□□□ 0.3
VRK3-205ENST00000593919 CACNA1FO60840 1977 aa16.92■□□□□ 0.3
VRK3-205ENST00000593919 KAT6BQ8WYB5 2073 aa16.92■□□□□ 0.3
VRK3-205ENST00000593919 KIF16BQ96L93 1317 aa16.92■□□□□ 0.3
VRK3-205ENST00000593919 SLC52A2Q9HAB3 445 aa16.92■□□□□ 0.3
VRK3-205ENST00000593919 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.92■□□□□ 0.3
VRK3-205ENST00000593919 SPATA31A5Q5VU36 1347 aa16.92■□□□□ 0.3
VRK3-205ENST00000593919 SPATA31A7Q8IWB4 1347 aa16.92■□□□□ 0.3
VRK3-205ENST00000593919 TCERG1O14776 1098 aaKnown RBP16.91■□□□□ 0.3
VRK3-205ENST00000593919 BRPF1P55201 1214 aaPredicted RBP16.91■□□□□ 0.3
VRK3-205ENST00000593919 PDE3AQ14432 1141 aa16.91■□□□□ 0.3
VRK3-205ENST00000593919 UNC5CLQ8IV45 518 aa16.91■□□□□ 0.3
VRK3-205ENST00000593919 DDX54Q8TDD1 881 aaKnown RBP16.91■□□□□ 0.3
VRK3-205ENST00000593919 TAOK2Q9UL54 1235 aa16.91■□□□□ 0.3
VRK3-205ENST00000593919 TOGARAM1Q9Y4F4 1720 aa16.91■□□□□ 0.3
VRK3-205ENST00000593919 KCNQ3O43525 872 aa16.91■□□□□ 0.3
VRK3-205ENST00000593919 ZKSCAN2Q63HK3 967 aa16.91■□□□□ 0.3
VRK3-205ENST00000593919 MRPL50Q8N5N7 158 aaKnown RBP16.91■□□□□ 0.3
VRK3-205ENST00000593919 NOB1Q9ULX3 412 aaKnown RBP16.91■□□□□ 0.3
VRK3-205ENST00000593919 TNNQ9UQP3 1299 aa16.91■□□□□ 0.3
VRK3-205ENST00000593919 THRAP3Q9Y2W1 955 aaKnown RBP16.91■□□□□ 0.3
VRK3-205ENST00000593919 EIF4A1P60842 406 aaKnown RBP16.9■□□□□ 0.3
VRK3-205ENST00000593919 FNBP4Q8N3X1 1017 aaPredicted RBP16.9■□□□□ 0.3
VRK3-205ENST00000593919 NFATC2IPQ8NCF5 419 aa16.9■□□□□ 0.3
VRK3-205ENST00000593919 TNS2Q63HR2 1409 aa16.9■□□□□ 0.3
VRK3-205ENST00000593919 NKX1-1Q15270 411 aaPredicted RBP16.89■□□□□ 0.3
VRK3-205ENST00000593919 PANK1Q8TE04 598 aa16.89■□□□□ 0.3
VRK3-205ENST00000593919 CCDC9Q9Y3X0 531 aaKnown RBP16.89■□□□□ 0.3
VRK3-205ENST00000593919 RLBP1P12271 317 aa16.89■□□□□ 0.29
VRK3-205ENST00000593919 TRIM27P14373 513 aa16.89■□□□□ 0.29
VRK3-205ENST00000593919 CLUAP1Q96AJ1 413 aa16.89■□□□□ 0.29
VRK3-205ENST00000593919 ATF7IPQ6VMQ6 1270 aa16.88■□□□□ 0.29
VRK3-205ENST00000593919 SOS1Q07889 1333 aaPredicted RBP16.88■□□□□ 0.29
VRK3-205ENST00000593919 ITGB4P16144 1822 aa16.88■□□□□ 0.29
VRK3-205ENST00000593919 MEX3CQ5U5Q3 659 aaKnown RBP16.88■□□□□ 0.29
VRK3-205ENST00000593919 CDCA7Q9BWT1 371 aaPredicted RBP16.88■□□□□ 0.29
VRK3-205ENST00000593919 IPO8O15397 1037 aaKnown RBP16.87■□□□□ 0.29
VRK3-205ENST00000593919 CABP4P57796 275 aa16.87■□□□□ 0.29
VRK3-205ENST00000593919 EXOC5O00471 708 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 SLC39A6Q13433 755 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 VPS72Q15906 364 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 ZNF790Q6PG37 636 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 FTSJ3Q8IY81 847 aaKnown RBP16.86■□□□□ 0.29
VRK3-205ENST00000593919 USP21Q9UK80 565 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 COG6Q9Y2V7 657 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 ERVV-2B6SEH9 535 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 BARGINQ6ZT62 677 aa16.86■□□□□ 0.29
VRK3-205ENST00000593919 DZIP1LQ8IYY4 767 aaKnown RBP16.86■□□□□ 0.29
VRK3-205ENST00000593919 PAPPAQ13219 1627 aa16.85■□□□□ 0.29
VRK3-205ENST00000593919 HEG1Q9ULI3 1381 aa16.85■□□□□ 0.29
VRK3-205ENST00000593919 C5P01031 1676 aa16.85■□□□□ 0.29
VRK3-205ENST00000593919 HOXB7P09629 217 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 NECTIN2Q92692 538 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 UBR2Q8IWV8 1755 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 SLC4A2P04920 1241 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 MS4A1P11836 297 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 DDB1Q16531 1140 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 CCDC30Q5VVM6 783 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 ARHGAP45Q92619 1136 aa16.84■□□□□ 0.29
VRK3-205ENST00000593919 HDGFL1Q5TGJ6 251 aa16.83■□□□□ 0.28
VRK3-205ENST00000593919 STK31Q9BXU1 1019 aa16.83■□□□□ 0.28
VRK3-205ENST00000593919 DOT1LQ8TEK3 1739 aa16.83■□□□□ 0.28
VRK3-205ENST00000593919 GIGYF1O75420 1035 aaPredicted RBP16.82■□□□□ 0.28
VRK3-205ENST00000593919 FAM98CQ17RN3 349 aaKnown RBP16.82■□□□□ 0.28
VRK3-205ENST00000593919 GLI3P10071 1580 aa16.82■□□□□ 0.28
VRK3-205ENST00000593919 AFF2P51816 1311 aa16.82■□□□□ 0.28
VRK3-205ENST00000593919 MVPQ14764 893 aaKnown RBP16.82■□□□□ 0.28
VRK3-205ENST00000593919 TTC5Q8N0Z6 440 aa16.82■□□□□ 0.28
VRK3-205ENST00000593919 PRAMEF22A3QJZ6 481 aa16.81■□□□□ 0.28
VRK3-205ENST00000593919 EIF2S2P20042 333 aaKnown RBP16.81■□□□□ 0.28
VRK3-205ENST00000593919 TMEM57Q8N5G2 664 aa16.8■□□□□ 0.28
VRK3-205ENST00000593919 ZNF496Q96IT1 587 aaPredicted RBP16.8■□□□□ 0.28
VRK3-205ENST00000593919 RGS12O14924 1447 aa16.8■□□□□ 0.28
VRK3-205ENST00000593919 G2E3Q7L622 706 aa16.8■□□□□ 0.28
VRK3-205ENST00000593919 LAMB4A4D0S4 1761 aa16.8■□□□□ 0.28
VRK3-205ENST00000593919 ABCC4O15439 1325 aa16.79■□□□□ 0.28
VRK3-205ENST00000593919 PTPRCP08575 1304 aa16.79■□□□□ 0.28
VRK3-205ENST00000593919 ITPRIPQ8IWB1 547 aa16.79■□□□□ 0.28
VRK3-205ENST00000593919 API5Q9BZZ5 524 aaKnown RBP16.79■□□□□ 0.28
VRK3-205ENST00000593919 TMOD3Q9NYL9 352 aa16.79■□□□□ 0.28
VRK3-205ENST00000593919 THSD7AQ9UPZ6 1657 aa16.79■□□□□ 0.28
VRK3-205ENST00000593919 KCPQ6ZWJ8 1503 aa16.79■□□□□ 0.28
VRK3-205ENST00000593919 FMNL2Q96PY5 1086 aa16.78■□□□□ 0.28
VRK3-205ENST00000593919 MARCH10Q8NA82 808 aaPredicted RBP16.78■□□□□ 0.28
VRK3-205ENST00000593919 CHMP4AQ9BY43 222 aa16.78■□□□□ 0.28
VRK3-205ENST00000593919 CHPF2Q9P2E5 772 aa16.78■□□□□ 0.28
VRK3-205ENST00000593919 FLIIQ13045 1269 aa16.77■□□□□ 0.28
VRK3-205ENST00000593919 ATRNO75882 1429 aa16.77■□□□□ 0.27
VRK3-205ENST00000593919 PIGBQ92521 554 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms