RNA–Protein interactions for RNA: ENST00000589532.5

LSM7-205, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 3

Gene LSM7, Length 539 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM7-205	ENST00000589532	SMIM5	Q71RC9	77 aa		32.52	■■■□□ 2.8
LSM7-205	ENST00000589532	KNSTRN	Q9Y448	316 aa		32.52	■■■□□ 2.8
LSM7-205	ENST00000589532	CIC	Q96RK0	1608 aa	Predicted RBP	32.51	■■■□□ 2.8
LSM7-205	ENST00000589532	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.51	■■■□□ 2.79
LSM7-205	ENST00000589532	ERVV-2	B6SEH9	535 aa		32.5	■■■□□ 2.79
LSM7-205	ENST00000589532	DCAF5	Q96JK2	942 aa		32.5	■■■□□ 2.79
LSM7-205	ENST00000589532	SLC4A9	Q96Q91	983 aa		32.49	■■■□□ 2.79
LSM7-205	ENST00000589532	PHF14	O94880	888 aa		32.48	■■■□□ 2.79
LSM7-205	ENST00000589532	HSP90AB1	P08238	724 aa	Known RBP	32.48	■■■□□ 2.79
LSM7-205	ENST00000589532	IL13	P35225	146 aa		32.48	■■■□□ 2.79
LSM7-205	ENST00000589532	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.48	■■■□□ 2.79
LSM7-205	ENST00000589532	SCN11A	Q9UI33	1791 aa		32.47	■■■□□ 2.79
LSM7-205	ENST00000589532	YBX3	P16989	372 aa	Known RBP eCLIP	32.47	■■■□□ 2.79
LSM7-205	ENST00000589532	ATP6V1A	P38606	617 aa		32.47	■■■□□ 2.79
LSM7-205	ENST00000589532	AMOT	Q4VCS5	1084 aa		32.47	■■■□□ 2.79
LSM7-205	ENST00000589532	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.47	■■■□□ 2.79
LSM7-205	ENST00000589532	CD2AP	Q9Y5K6	639 aa		32.47	■■■□□ 2.79
LSM7-205	ENST00000589532	GNPAT	O15228	680 aa		32.44	■■■□□ 2.78
LSM7-205	ENST00000589532	TJP1	Q07157	1748 aa		32.43	■■■□□ 2.78
LSM7-205	ENST00000589532	PER1	O15534	1290 aa	Predicted RBP	32.43	■■■□□ 2.78
LSM7-205	ENST00000589532	C4A	P0C0L4	1744 aa		32.43	■■■□□ 2.78
LSM7-205	ENST00000589532	SULT6B1	Q6IMI4	303 aa		32.42	■■■□□ 2.78
LSM7-205	ENST00000589532	PELP1	Q8IZL8	1130 aa	Known RBP	32.42	■■■□□ 2.78
LSM7-205	ENST00000589532	MYH14	Q7Z406	1995 aa	Known RBP	32.41	■■■□□ 2.78
LSM7-205	ENST00000589532	ADAMTS7	Q9UKP4	1686 aa		32.41	■■■□□ 2.78
LSM7-205	ENST00000589532	KIAA1551	Q9HCM1	1747 aa		32.41	■■■□□ 2.78
LSM7-205	ENST00000589532	KIF13B	Q9NQT8	1826 aa		32.41	■■■□□ 2.78
LSM7-205	ENST00000589532	MRC1	P22897	1456 aa		32.41	■■■□□ 2.78
LSM7-205	ENST00000589532	CNTNAP4	Q9C0A0	1308 aa		32.38	■■■□□ 2.77
LSM7-205	ENST00000589532	VIRMA	Q69YN4	1812 aa	Known RBP	32.37	■■■□□ 2.77
LSM7-205	ENST00000589532	COL3A1	P02461	1466 aa	Predicted RBP	32.37	■■■□□ 2.77
LSM7-205	ENST00000589532	GRIN3B	O60391	1043 aa		32.35	■■■□□ 2.77
LSM7-205	ENST00000589532	MTHFS	P49914	203 aa		32.35	■■■□□ 2.77
LSM7-205	ENST00000589532	CABP4	P57796	275 aa		32.35	■■■□□ 2.77
LSM7-205	ENST00000589532	C1orf141	Q5JVX7	400 aa		32.35	■■■□□ 2.77
LSM7-205	ENST00000589532	NPC1L1	Q9UHC9	1359 aa		32.34	■■■□□ 2.77
LSM7-205	ENST00000589532	RC3H1	Q5TC82	1133 aa	Known RBP	32.34	■■■□□ 2.77
LSM7-205	ENST00000589532	RBM42	Q9BTD8	480 aa	Known RBP	32.33	■■■□□ 2.77
LSM7-205	ENST00000589532	RTCB	Q9Y3I0	505 aa	Known RBP	32.31	■■■□□ 2.76
LSM7-205	ENST00000589532	ADRA2B	P18089	450 aa		32.3	■■■□□ 2.76
LSM7-205	ENST00000589532	NFATC2IP	Q8NCF5	419 aa		32.3	■■■□□ 2.76
LSM7-205	ENST00000589532	C10orf71	Q711Q0	1435 aa		32.29	■■■□□ 2.76
LSM7-205	ENST00000589532	PXDNL	A1KZ92	1463 aa		32.29	■■■□□ 2.76
LSM7-205	ENST00000589532	AKAP4	Q5JQC9	854 aa		32.28	■■■□□ 2.76
LSM7-205	ENST00000589532	RPS6KA4	O75676	772 aa		32.27	■■■□□ 2.76
LSM7-205	ENST00000589532	MMP10	P09238	476 aa		32.27	■■■□□ 2.76
LSM7-205	ENST00000589532	TRAPPC3L	Q5T215	181 aa		32.27	■■■□□ 2.76
LSM7-205	ENST00000589532	ARHGEF1	Q92888	912 aa	Known RBP	32.27	■■■□□ 2.76
LSM7-205	ENST00000589532	ADCY9	O60503	1353 aa		32.27	■■■□□ 2.76
LSM7-205	ENST00000589532	KCP	Q6ZWJ8	1503 aa		32.26	■■■□□ 2.76
LSM7-205	ENST00000589532	CC2D1B	Q5T0F9	858 aa	Known RBP	32.26	■■■□□ 2.75
LSM7-205	ENST00000589532	ZEB1	P37275	1124 aa	Predicted RBP	32.25	■■■□□ 2.75
LSM7-205	ENST00000589532	UBR2	Q8IWV8	1755 aa		32.24	■■■□□ 2.75
LSM7-205	ENST00000589532	PTCD1	O75127	700 aa	Known RBP	32.24	■■■□□ 2.75
LSM7-205	ENST00000589532	HMOX1	P09601	288 aa		32.24	■■■□□ 2.75
LSM7-205	ENST00000589532	GYS1	P13807	737 aa		32.24	■■■□□ 2.75
LSM7-205	ENST00000589532	N4BP2	Q86UW6	1770 aa	Predicted RBP	32.23	■■■□□ 2.75
LSM7-205	ENST00000589532	SLC52A2	Q9HAB3	445 aa		32.23	■■■□□ 2.75
LSM7-205	ENST00000589532	BRCA1	P38398	1863 aa	Known RBP	32.23	■■■□□ 2.75
LSM7-205	ENST00000589532	ATP10D	Q9P241	1426 aa		32.21	■■■□□ 2.75
LSM7-205	ENST00000589532	DIAPH1	O60610	1272 aa	Known RBP	32.21	■■■□□ 2.75
LSM7-205	ENST00000589532	CRKL	P46109	303 aa	Known RBP	32.21	■■■□□ 2.75
LSM7-205	ENST00000589532	NLGN1	Q8N2Q7	840 aa		32.21	■■■□□ 2.75
LSM7-205	ENST00000589532	LGR6	Q9HBX8	967 aa		32.21	■■■□□ 2.75
LSM7-205	ENST00000589532	C1QTNF8	P60827	252 aa		32.2	■■■□□ 2.75
LSM7-205	ENST00000589532	MTHFSD	Q2M296	383 aa	Known RBP	32.19	■■■□□ 2.74
LSM7-205	ENST00000589532	RNMT	O43148	476 aa	Known RBP	32.18	■■■□□ 2.74
LSM7-205	ENST00000589532	SIPA1L3	O60292	1781 aa	Predicted RBP	32.17	■■■□□ 2.74
LSM7-205	ENST00000589532	RFC4	P35249	363 aa		32.16	■■■□□ 2.74
LSM7-205	ENST00000589532	USP42	Q9H9J4	1324 aa	Known RBP	32.16	■■■□□ 2.74
LSM7-205	ENST00000589532	INTS5	Q6P9B9	1019 aa	Known RBP	32.15	■■■□□ 2.74
LSM7-205	ENST00000589532	WWC3	Q9ULE0	1092 aa		32.15	■■■□□ 2.74
LSM7-205	ENST00000589532	GIGYF1	O75420	1035 aa	Predicted RBP	32.14	■■■□□ 2.74
LSM7-205	ENST00000589532	DNAJC10	Q8IXB1	793 aa		32.12	■■■□□ 2.73
LSM7-205	ENST00000589532	SRP68	Q9UHB9	627 aa	Known RBP	32.12	■■■□□ 2.73
LSM7-205	ENST00000589532	CEP350	Q5VT06	3117 aa		32.12	■■■□□ 2.73
LSM7-205	ENST00000589532	TGFB2	P61812	414 aa		32.11	■■■□□ 2.73
LSM7-205	ENST00000589532	SLC39A6	Q13433	755 aa		32.1	■■■□□ 2.73
LSM7-205	ENST00000589532	SOS1	Q07889	1333 aa	Predicted RBP	32.09	■■■□□ 2.73
LSM7-205	ENST00000589532	CCDC87	Q9NVE4	849 aa		32.09	■■■□□ 2.73
LSM7-205	ENST00000589532	CYP19A1	P11511	503 aa	Predicted RBP	32.08	■■■□□ 2.73
LSM7-205	ENST00000589532	DDR1	Q08345	913 aa		32.08	■■■□□ 2.73
LSM7-205	ENST00000589532	FKBP8	Q14318	412 aa		32.08	■■■□□ 2.73
LSM7-205	ENST00000589532	ARFGEF1	Q9Y6D6	1849 aa		32.07	■■■□□ 2.73
LSM7-205	ENST00000589532	NRXN2	Q9P2S2	1712 aa		32.06	■■■□□ 2.72
LSM7-205	ENST00000589532	PARP3	Q9Y6F1	533 aa		32.06	■■■□□ 2.72
LSM7-205	ENST00000589532		A0A0G2JLW4	131 aa		32.04	■■■□□ 2.72
LSM7-205	ENST00000589532	DPEP1	P16444	411 aa		32.03	■■■□□ 2.72
LSM7-205	ENST00000589532	VSIG10	Q8N0Z9	540 aa		32.03	■■■□□ 2.72
LSM7-205	ENST00000589532	ZBTB1	Q9Y2K1	713 aa		32.03	■■■□□ 2.72
LSM7-205	ENST00000589532	COL15A1	P39059	1388 aa		32.03	■■■□□ 2.72
LSM7-205	ENST00000589532	AFDN	P55196	1824 aa	Known RBP	32.03	■■■□□ 2.72
LSM7-205	ENST00000589532	SENP3-EIF4A1	A0A087X0R7	540 aa		32.02	■■■□□ 2.72
LSM7-205	ENST00000589532	U2SURP	O15042	1029 aa	Known RBP	32.02	■■■□□ 2.72
LSM7-205	ENST00000589532	KCNA3	P22001	575 aa		32.02	■■■□□ 2.72
LSM7-205	ENST00000589532	CNGB1	Q14028	1251 aa	Predicted RBP	32.01	■■■□□ 2.71
LSM7-205	ENST00000589532	CEMIP	Q8WUJ3	1361 aa		32.01	■■■□□ 2.71
LSM7-205	ENST00000589532	POLRMT	O00411	1230 aa	Known RBP	32	■■■□□ 2.71
LSM7-205	ENST00000589532	IL17RE	Q8NFR9	667 aa		32	■■■□□ 2.71
LSM7-205	ENST00000589532	SCN7A	Q01118	1682 aa		31.99	■■■□□ 2.71

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms