RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 TNS4Q8IZW8 715 aa11.8□□□□□ -0.52
VMP1-208ENST00000588617 BACH2Q9BYV9 841 aa11.8□□□□□ -0.52
VMP1-208ENST00000588617 ATAD2Q6PL18 1390 aa11.79□□□□□ -0.52
VMP1-208ENST00000588617 BACH1O14867 736 aa11.79□□□□□ -0.52
VMP1-208ENST00000588617 TMC1Q8TDI8 760 aa11.79□□□□□ -0.52
VMP1-208ENST00000588617 CHMP7Q8WUX9 453 aaPredicted RBP11.79□□□□□ -0.52
VMP1-208ENST00000588617 ZNF516Q92618 1163 aa11.79□□□□□ -0.52
VMP1-208ENST00000588617 PUS7Q96PZ0 661 aaKnown RBP11.79□□□□□ -0.52
VMP1-208ENST00000588617 PPP1R1BQ9UD71 204 aaPredicted RBP11.79□□□□□ -0.52
VMP1-208ENST00000588617 BRPF3Q9ULD4 1205 aa11.79□□□□□ -0.52
VMP1-208ENST00000588617 HSP90B1P14625 803 aaKnown RBP11.78□□□□□ -0.52
VMP1-208ENST00000588617 ERCC5P28715 1186 aaPredicted RBP11.78□□□□□ -0.52
VMP1-208ENST00000588617 ERVH48-1M5A8F1 160 aa11.77□□□□□ -0.53
VMP1-208ENST00000588617 AAMPQ13685 434 aa11.77□□□□□ -0.53
VMP1-208ENST00000588617 FAM177A1Q8N128 213 aaPredicted RBP11.77□□□□□ -0.53
VMP1-208ENST00000588617 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.77□□□□□ -0.53
VMP1-208ENST00000588617 S1PR4O95977 384 aa11.76□□□□□ -0.53
VMP1-208ENST00000588617 GDF10P55107 478 aa11.76□□□□□ -0.53
VMP1-208ENST00000588617 KCNC4Q03721 635 aa11.76□□□□□ -0.53
VMP1-208ENST00000588617 INTS6LQ5JSJ4 861 aaKnown RBP11.76□□□□□ -0.53
VMP1-208ENST00000588617 VASH1Q7L8A9 365 aaPredicted RBP11.76□□□□□ -0.53
VMP1-208ENST00000588617 IL21Q9HBE4 155 aa11.76□□□□□ -0.53
VMP1-208ENST00000588617 SCAMP3O14828 347 aaKnown RBP11.75□□□□□ -0.53
VMP1-208ENST00000588617 TREHO43280 583 aa11.75□□□□□ -0.53
VMP1-208ENST00000588617 MRPL58Q14197 206 aaKnown RBP11.75□□□□□ -0.53
VMP1-208ENST00000588617 CC2D2BQ6DHV5 1058 aa11.75□□□□□ -0.53
VMP1-208ENST00000588617 C16orf46Q6P387 395 aa11.75□□□□□ -0.53
VMP1-208ENST00000588617 SAP130Q9H0E3 1048 aa11.75□□□□□ -0.53
VMP1-208ENST00000588617 TSPAN10Q9H1Z9 355 aaPredicted RBP11.75□□□□□ -0.53
VMP1-208ENST00000588617 SERTAD1Q9UHV2 236 aa11.75□□□□□ -0.53
VMP1-208ENST00000588617 STAU1O95793 577 aaKnown RBP11.74□□□□□ -0.53
VMP1-208ENST00000588617 SCNN1DP51172 638 aa11.74□□□□□ -0.53
VMP1-208ENST00000588617 ERVK-9P63128 1117 aa11.74□□□□□ -0.53
VMP1-208ENST00000588617 XPCQ01831 940 aaPredicted RBP11.74□□□□□ -0.53
VMP1-208ENST00000588617 PLCB3Q01970 1234 aa11.74□□□□□ -0.53
VMP1-208ENST00000588617 FMR1Q06787 632 aaKnown RBP eCLIP11.73□□□□□ -0.53
VMP1-208ENST00000588617 SF3A1Q15459 793 aaKnown RBP11.73□□□□□ -0.53
VMP1-208ENST00000588617 TJAP1Q5JTD0 557 aa11.73□□□□□ -0.53
VMP1-208ENST00000588617 C9orf131Q5VYM1 1079 aa11.73□□□□□ -0.53
VMP1-208ENST00000588617 CITED4Q96RK1 184 aa11.73□□□□□ -0.53
VMP1-208ENST00000588617 PPP1R12BO60237 982 aaPredicted RBP11.72□□□□□ -0.53
VMP1-208ENST00000588617 RGS20O76081 388 aa11.72□□□□□ -0.53
VMP1-208ENST00000588617 LDHBP07195 334 aaKnown RBP11.72□□□□□ -0.53
VMP1-208ENST00000588617 MAPK8P45983 427 aa11.72□□□□□ -0.53
VMP1-208ENST00000588617 EIF1AXP47813 144 aaKnown RBP11.72□□□□□ -0.53
VMP1-208ENST00000588617 HDLBPQ00341 1268 aaKnown RBP11.72□□□□□ -0.53
VMP1-208ENST00000588617 ALKBH2Q6NS38 261 aa11.72□□□□□ -0.53
VMP1-208ENST00000588617 OSBPL3Q9H4L5 887 aa11.72□□□□□ -0.53
VMP1-208ENST00000588617 CCDC87Q9NVE4 849 aa11.72□□□□□ -0.53
VMP1-208ENST00000588617 WASLO00401 505 aaPredicted RBP11.71□□□□□ -0.53
VMP1-208ENST00000588617 INHAP05111 366 aa11.71□□□□□ -0.53
VMP1-208ENST00000588617 FGD1P98174 961 aa11.71□□□□□ -0.53
VMP1-208ENST00000588617 UBXN4Q92575 508 aa11.71□□□□□ -0.53
VMP1-208ENST00000588617 MAP4K5Q9Y4K4 846 aa11.71□□□□□ -0.53
VMP1-208ENST00000588617 A0A1W2PRU2 124 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 ZBTB24O43167 697 aaPredicted RBP11.7□□□□□ -0.54
VMP1-208ENST00000588617 VARSP26640 1264 aaKnown RBP11.7□□□□□ -0.54
VMP1-208ENST00000588617 EPHA4P54764 986 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 TMEM87AQ8NBN3 555 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 NKX2-3Q8TAU0 364 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 PRKD2Q9BZL6 878 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 MRS2Q9HD23 443 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 CYLDQ9NQC7 956 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 PARP2Q9UGN5 583 aa11.7□□□□□ -0.54
VMP1-208ENST00000588617 DSC3Q14574 896 aa11.69□□□□□ -0.54
VMP1-208ENST00000588617 TRIM52Q96A61 297 aa11.69□□□□□ -0.54
VMP1-208ENST00000588617 DMRTB1Q96MA1 342 aa11.69□□□□□ -0.54
VMP1-208ENST00000588617 FAM161BQ96MY7 647 aa11.69□□□□□ -0.54
VMP1-208ENST00000588617 STIM2Q9P246 746 aa11.69□□□□□ -0.54
VMP1-208ENST00000588617 FZD6O60353 706 aa11.68□□□□□ -0.54
VMP1-208ENST00000588617 PRPF40AO75400 957 aaKnown RBP11.68□□□□□ -0.54
VMP1-208ENST00000588617 EHHADHQ08426 723 aa11.68□□□□□ -0.54
VMP1-208ENST00000588617 ARID5BQ14865 1188 aa11.68□□□□□ -0.54
VMP1-208ENST00000588617 TBCELQ5QJ74 424 aa11.68□□□□□ -0.54
VMP1-208ENST00000588617 DUSP9Q99956 384 aaKnown RBP11.68□□□□□ -0.54
VMP1-208ENST00000588617 ETNK1Q9HBU6 452 aa11.68□□□□□ -0.54
VMP1-208ENST00000588617 TMPRSS4Q9NRS4 437 aa11.68□□□□□ -0.54
VMP1-208ENST00000588617 ITGAEP38570 1179 aa11.67□□□□□ -0.54
VMP1-208ENST00000588617 COX20Q5RI15 118 aa11.67□□□□□ -0.54
VMP1-208ENST00000588617 SLC4A9Q96Q91 983 aa11.67□□□□□ -0.54
VMP1-208ENST00000588617 PDE3BQ13370 1112 aa11.66□□□□□ -0.54
VMP1-208ENST00000588617 LDLRAD1Q5T700 205 aa11.66□□□□□ -0.54
VMP1-208ENST00000588617 SLC9A9Q8IVB4 645 aa11.66□□□□□ -0.54
VMP1-208ENST00000588617 TNFRSF10BO14763 440 aa11.65□□□□□ -0.54
VMP1-208ENST00000588617 ATP2B2Q01814 1243 aa11.65□□□□□ -0.54
VMP1-208ENST00000588617 C2orf49Q9BVC5 232 aaPredicted RBP11.65□□□□□ -0.54
VMP1-208ENST00000588617 PPEF1O14829 653 aaPredicted RBP11.64□□□□□ -0.55
VMP1-208ENST00000588617 SORBS3O60504 671 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 DHX9Q08211 1270 aaKnown RBP11.64□□□□□ -0.55
VMP1-208ENST00000588617 TRIM32Q13049 653 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 PSMD2Q13200 908 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 TMC4Q7Z404 712 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 STAG2Q8N3U4 1231 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 PIK3R5Q8WYR1 880 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 RNF19AQ9NV58 838 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 SCHIP1Q9P0W5 487 aaPredicted RBP11.64□□□□□ -0.55
VMP1-208ENST00000588617 VTI1BQ9UEU0 232 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 WWC3Q9ULE0 1092 aa11.64□□□□□ -0.55
VMP1-208ENST00000588617 A6NJY4 79 aa11.63□□□□□ -0.55
VMP1-208ENST00000588617 CDK11BP21127 795 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms