RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 PLEKHG2Q9H7P9 1386 aa19.54■□□□□ 0.72
VMP1-206ENST00000587945 PER1O15534 1290 aaPredicted RBP19.53■□□□□ 0.72
VMP1-206ENST00000587945 CC2D1BQ5T0F9 858 aaKnown RBP19.53■□□□□ 0.72
VMP1-206ENST00000587945 SLC4A9Q96Q91 983 aa19.53■□□□□ 0.72
VMP1-206ENST00000587945 ITGB4P16144 1822 aa19.53■□□□□ 0.72
VMP1-206ENST00000587945 C4BP0C0L5 1744 aa19.52■□□□□ 0.72
VMP1-206ENST00000587945 GNPATO15228 680 aa19.52■□□□□ 0.72
VMP1-206ENST00000587945 MTHFSP49914 203 aa19.52■□□□□ 0.72
VMP1-206ENST00000587945 CABP4P57796 275 aa19.52■□□□□ 0.72
VMP1-206ENST00000587945 CNGB1Q14028 1251 aaPredicted RBP19.52■□□□□ 0.72
VMP1-206ENST00000587945 RBM42Q9BTD8 480 aaKnown RBP19.52■□□□□ 0.72
VMP1-206ENST00000587945 KDM6AO15550 1401 aaPredicted RBP19.51■□□□□ 0.71
VMP1-206ENST00000587945 SSFA2P28290 1259 aa19.51■□□□□ 0.71
VMP1-206ENST00000587945 C1orf141Q5JVX7 400 aa19.51■□□□□ 0.71
VMP1-206ENST00000587945 ZNF784Q8NCA9 323 aaPredicted RBP19.51■□□□□ 0.71
VMP1-206ENST00000587945 COL24A1Q17RW2 1714 aa19.51■□□□□ 0.71
VMP1-206ENST00000587945 KDRP35968 1356 aa19.48■□□□□ 0.71
VMP1-206ENST00000587945 HMOX1P09601 288 aa19.48■□□□□ 0.71
VMP1-206ENST00000587945 YBX3P16989 372 aaKnown RBP eCLIP19.48■□□□□ 0.71
VMP1-206ENST00000587945 NFATC2IPQ8NCF5 419 aa19.47■□□□□ 0.71
VMP1-206ENST00000587945 CD2APQ9Y5K6 639 aa19.47■□□□□ 0.71
VMP1-206ENST00000587945 TAF1LQ8IZX4 1826 aa19.46■□□□□ 0.71
VMP1-206ENST00000587945 PTCD1O75127 700 aaKnown RBP19.46■□□□□ 0.71
VMP1-206ENST00000587945 GOLGB1Q14789 3259 aaKnown RBP19.45■□□□□ 0.7
VMP1-206ENST00000587945 RTCBQ9Y3I0 505 aaKnown RBP19.44■□□□□ 0.7
VMP1-206ENST00000587945 DIAPH1O60610 1272 aaKnown RBP19.43■□□□□ 0.7
VMP1-206ENST00000587945 AKAP4Q5JQC9 854 aa19.43■□□□□ 0.7
VMP1-206ENST00000587945 TRAPPC3LQ5T215 181 aa19.43■□□□□ 0.7
VMP1-206ENST00000587945 LGR6Q9HBX8 967 aa19.43■□□□□ 0.7
VMP1-206ENST00000587945 WWC3Q9ULE0 1092 aa19.43■□□□□ 0.7
VMP1-206ENST00000587945 RC3H1Q5TC82 1133 aaKnown RBP19.42■□□□□ 0.7
VMP1-206ENST00000587945 ARHGEF1Q92888 912 aaKnown RBP19.42■□□□□ 0.7
VMP1-206ENST00000587945 UBR3Q6ZT12 1888 aa19.41■□□□□ 0.7
VMP1-206ENST00000587945 GRIN3BO60391 1043 aa19.41■□□□□ 0.7
VMP1-206ENST00000587945 MMP10P09238 476 aa19.41■□□□□ 0.7
VMP1-206ENST00000587945 CNTNAP4Q9C0A0 1308 aa19.41■□□□□ 0.7
VMP1-206ENST00000587945 RPS6KA4O75676 772 aa19.4■□□□□ 0.7
VMP1-206ENST00000587945 MTHFSDQ2M296 383 aaKnown RBP19.4■□□□□ 0.7
VMP1-206ENST00000587945 RNMTO43148 476 aaKnown RBP19.39■□□□□ 0.69
VMP1-206ENST00000587945 CRKLP46109 303 aaKnown RBP19.38■□□□□ 0.69
VMP1-206ENST00000587945 SLC52A2Q9HAB3 445 aa19.38■□□□□ 0.69
VMP1-206ENST00000587945 NPC1L1Q9UHC9 1359 aa19.38■□□□□ 0.69
VMP1-206ENST00000587945 U2SURPO15042 1029 aaKnown RBP19.37■□□□□ 0.69
VMP1-206ENST00000587945 ADRA2BP18089 450 aa19.37■□□□□ 0.69
VMP1-206ENST00000587945 RFC4P35249 363 aa19.37■□□□□ 0.69
VMP1-206ENST00000587945 SLC39A6Q13433 755 aa19.37■□□□□ 0.69
VMP1-206ENST00000587945 GYS1P13807 737 aa19.36■□□□□ 0.69
VMP1-206ENST00000587945 NLGN1Q8N2Q7 840 aa19.36■□□□□ 0.69
VMP1-206ENST00000587945 DNAJC10Q8IXB1 793 aa19.35■□□□□ 0.69
VMP1-206ENST00000587945 SRP68Q9UHB9 627 aaKnown RBP19.35■□□□□ 0.69
VMP1-206ENST00000587945 INTS5Q6P9B9 1019 aaKnown RBP19.34■□□□□ 0.69
VMP1-206ENST00000587945 COL3A1P02461 1466 aaPredicted RBP19.34■□□□□ 0.69
VMP1-206ENST00000587945 FKBP8Q14318 412 aa19.31■□□□□ 0.68
VMP1-206ENST00000587945 CHD4Q14839 1912 aa19.31■□□□□ 0.68
VMP1-206ENST00000587945 ZNF831Q5JPB2 1677 aa19.3■□□□□ 0.68
VMP1-206ENST00000587945 CCDC87Q9NVE4 849 aa19.3■□□□□ 0.68
VMP1-206ENST00000587945 PARP3Q9Y6F1 533 aa19.3■□□□□ 0.68
VMP1-206ENST00000587945 MRC1P22897 1456 aa19.29■□□□□ 0.68
VMP1-206ENST00000587945 A0A0G2JLW4 131 aa19.29■□□□□ 0.68
VMP1-206ENST00000587945 CYP19A1P11511 503 aaPredicted RBP19.29■□□□□ 0.68
VMP1-206ENST00000587945 IL17REQ8NFR9 667 aa19.29■□□□□ 0.68
VMP1-206ENST00000587945 CICQ96RK0 1608 aaPredicted RBP19.29■□□□□ 0.68
VMP1-206ENST00000587945 COL5A3P25940 1745 aaPredicted RBP19.28■□□□□ 0.68
VMP1-206ENST00000587945 USP42Q9H9J4 1324 aaKnown RBP19.28■□□□□ 0.68
VMP1-206ENST00000587945 C1QTNF8P60827 252 aa19.28■□□□□ 0.68
VMP1-206ENST00000587945 TGFB2P61812 414 aa19.28■□□□□ 0.68
VMP1-206ENST00000587945 PXDNLA1KZ92 1463 aa19.28■□□□□ 0.68
VMP1-206ENST00000587945 C10orf71Q711Q0 1435 aa19.27■□□□□ 0.68
VMP1-206ENST00000587945 MYH14Q7Z406 1995 aaKnown RBP19.27■□□□□ 0.68
VMP1-206ENST00000587945 DDR1Q08345 913 aa19.27■□□□□ 0.68
VMP1-206ENST00000587945 GAS2L2Q8NHY3 880 aa19.27■□□□□ 0.68
VMP1-206ENST00000587945 PHACTR3Q96KR7 559 aa19.27■□□□□ 0.68
VMP1-206ENST00000587945 CFAP53Q96M91 514 aa19.27■□□□□ 0.68
VMP1-206ENST00000587945 SCN11AQ9UI33 1791 aa19.27■□□□□ 0.67
VMP1-206ENST00000587945 SOS1Q07889 1333 aaPredicted RBP19.26■□□□□ 0.67
VMP1-206ENST00000587945 GNAT3A8MTJ3 354 aa19.26■□□□□ 0.67
VMP1-206ENST00000587945 GIGYF1O75420 1035 aaPredicted RBP19.26■□□□□ 0.67
VMP1-206ENST00000587945 DPEP1P16444 411 aa19.26■□□□□ 0.67
VMP1-206ENST00000587945 PPP2R1AP30153 589 aa19.26■□□□□ 0.67
VMP1-206ENST00000587945 PRKAR2BP31323 418 aa19.26■□□□□ 0.67
VMP1-206ENST00000587945 BCS1LQ9Y276 419 aa19.26■□□□□ 0.67
VMP1-206ENST00000587945 ZBTB1Q9Y2K1 713 aa19.26■□□□□ 0.67
VMP1-206ENST00000587945 ATP10DQ9P241 1426 aa19.25■□□□□ 0.67
VMP1-206ENST00000587945 KCPQ6ZWJ8 1503 aa19.25■□□□□ 0.67
VMP1-206ENST00000587945 TJP1Q07157 1748 aa19.25■□□□□ 0.67
VMP1-206ENST00000587945 USPL1Q5W0Q7 1092 aa19.25■□□□□ 0.67
VMP1-206ENST00000587945 RSPH6AQ9H0K4 717 aa19.25■□□□□ 0.67
VMP1-206ENST00000587945 ZPR1O75312 459 aa19.24■□□□□ 0.67
VMP1-206ENST00000587945 TEFQ10587 303 aa19.24■□□□□ 0.67
VMP1-206ENST00000587945 TTC5Q8N0Z6 440 aa19.24■□□□□ 0.67
VMP1-206ENST00000587945 VSIG10Q8N0Z9 540 aa19.23■□□□□ 0.67
VMP1-206ENST00000587945 ZNF526Q8TF50 670 aaPredicted RBP19.23■□□□□ 0.67
VMP1-206ENST00000587945 ZNF496Q96IT1 587 aaPredicted RBP19.23■□□□□ 0.67
VMP1-206ENST00000587945 POLRMTO00411 1230 aaKnown RBP19.22■□□□□ 0.67
VMP1-206ENST00000587945 U2AF1L5P0DN76 240 aaPredicted RBP19.22■□□□□ 0.67
VMP1-206ENST00000587945 KCNA3P22001 575 aa19.22■□□□□ 0.67
VMP1-206ENST00000587945 CANXP27824 592 aaKnown RBP19.22■□□□□ 0.67
VMP1-206ENST00000587945 TM4SF1P30408 202 aa19.22■□□□□ 0.67
VMP1-206ENST00000587945 U2AF1Q01081 240 aaKnown RBP eCLIP19.22■□□□□ 0.67
VMP1-206ENST00000587945 NUDCQ9Y266 331 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms