RNA–Protein interactions for RNA: ENST00000587904.5

LINC01539-201, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 2 BASIC

Gene LINC01539, Length 2,068 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-201ENST00000587904 NBPF4Q96M43 638 aa12.06□□□□□ -0.48
LINC01539-201ENST00000587904 TSPYL4Q9UJ04 414 aa12.06□□□□□ -0.48
LINC01539-201ENST00000587904 IGHDP01880 384 aa12.05□□□□□ -0.48
LINC01539-201ENST00000587904 AMOTQ4VCS5 1084 aa12.05□□□□□ -0.48
LINC01539-201ENST00000587904 RGPD2P0DJD1 1756 aa12.05□□□□□ -0.48
LINC01539-201ENST00000587904 CEMIPQ8WUJ3 1361 aa12.04□□□□□ -0.48
LINC01539-201ENST00000587904 ANKRD24Q8TF21 1146 aa12.04□□□□□ -0.48
LINC01539-201ENST00000587904 PCDHB15Q9Y5E8 787 aa12.04□□□□□ -0.48
LINC01539-201ENST00000587904 PTPRCP08575 1304 aa12.04□□□□□ -0.48
LINC01539-201ENST00000587904 SPATA31A3Q5VYP0 1347 aa12.04□□□□□ -0.48
LINC01539-201ENST00000587904 HDAC1Q13547 482 aaPredicted RBP12.04□□□□□ -0.48
LINC01539-201ENST00000587904 PAXIP1Q6ZW49 1069 aaPredicted RBP12.04□□□□□ -0.48
LINC01539-201ENST00000587904 ZBTB40Q9NUA8 1239 aa12.04□□□□□ -0.48
LINC01539-201ENST00000587904 CPDO75976 1380 aa12.03□□□□□ -0.48
LINC01539-201ENST00000587904 COL18A1P39060 1754 aa12.03□□□□□ -0.48
LINC01539-201ENST00000587904 ELL2O00472 640 aaPredicted RBP12.03□□□□□ -0.48
LINC01539-201ENST00000587904 BRD2P25440 801 aaKnown RBP12.03□□□□□ -0.48
LINC01539-201ENST00000587904 PLEKHO1Q53GL0 409 aaPredicted RBP12.03□□□□□ -0.48
LINC01539-201ENST00000587904 USHBP1Q8N6Y0 703 aa12.03□□□□□ -0.48
LINC01539-201ENST00000587904 ERBB3P21860 1342 aa12.03□□□□□ -0.48
LINC01539-201ENST00000587904 ZBTB7CA1YPR0 619 aa12.02□□□□□ -0.48
LINC01539-201ENST00000587904 TAF7Q15545 349 aaPredicted RBP12.02□□□□□ -0.49
LINC01539-201ENST00000587904 AKAP4Q5JQC9 854 aa12.02□□□□□ -0.49
LINC01539-201ENST00000587904 BRINP3Q76B58 766 aa12.02□□□□□ -0.49
LINC01539-201ENST00000587904 ZNF335Q9H4Z2 1342 aaPredicted RBP12.01□□□□□ -0.49
LINC01539-201ENST00000587904 TERF1P54274 439 aa12.01□□□□□ -0.49
LINC01539-201ENST00000587904 IL17REQ8NFR9 667 aa12.01□□□□□ -0.49
LINC01539-201ENST00000587904 CHMP4AQ9BY43 222 aa12.01□□□□□ -0.49
LINC01539-201ENST00000587904 ADAMTS7Q9UKP4 1686 aa12.01□□□□□ -0.49
LINC01539-201ENST00000587904 KDM3BQ7LBC6 1761 aa12.01□□□□□ -0.49
LINC01539-201ENST00000587904 RGPD5Q99666 1765 aa12.01□□□□□ -0.49
LINC01539-201ENST00000587904 FRAT2O75474 233 aaPredicted RBP12.01□□□□□ -0.49
LINC01539-201ENST00000587904 LRRC59Q96AG4 307 aaKnown RBP12.01□□□□□ -0.49
LINC01539-201ENST00000587904 CACNA1FO60840 1977 aa12□□□□□ -0.49
LINC01539-201ENST00000587904 RGS12O14924 1447 aa12□□□□□ -0.49
LINC01539-201ENST00000587904 NHSL1Q5SYE7 1610 aa12□□□□□ -0.49
LINC01539-201ENST00000587904 VIRMAQ69YN4 1812 aaKnown RBP12□□□□□ -0.49
LINC01539-201ENST00000587904 FAM161AQ3B820 660 aa11.99□□□□□ -0.49
LINC01539-201ENST00000587904 INTS3Q68E01 1043 aaKnown RBP11.99□□□□□ -0.49
LINC01539-201ENST00000587904 ZNF530Q6P9A1 599 aaPredicted RBP11.99□□□□□ -0.49
LINC01539-201ENST00000587904 MTERF4Q7Z6M4 381 aaKnown RBP11.99□□□□□ -0.49
LINC01539-201ENST00000587904 SOS2Q07890 1332 aaPredicted RBP11.99□□□□□ -0.49
LINC01539-201ENST00000587904 LTBP4Q8N2S1 1624 aa11.99□□□□□ -0.49
LINC01539-201ENST00000587904 ZBTB7BO15156 539 aaPredicted RBP11.99□□□□□ -0.49
LINC01539-201ENST00000587904 HOXB7P09629 217 aa11.99□□□□□ -0.49
LINC01539-201ENST00000587904 C1orf141Q5JVX7 400 aa11.99□□□□□ -0.49
LINC01539-201ENST00000587904 STK31Q9BXU1 1019 aa11.99□□□□□ -0.49
LINC01539-201ENST00000587904 SLAIN2Q9P270 581 aa11.99□□□□□ -0.49
LINC01539-201ENST00000587904 AXIN2Q9Y2T1 843 aa11.99□□□□□ -0.49
LINC01539-201ENST00000587904 ZC3H6P61129 1189 aaKnown RBP11.98□□□□□ -0.49
LINC01539-201ENST00000587904 KRT24Q2M2I5 525 aa11.98□□□□□ -0.49
LINC01539-201ENST00000587904 N4BP2Q86UW6 1770 aaPredicted RBP11.98□□□□□ -0.49
LINC01539-201ENST00000587904 ABCA3Q99758 1704 aa11.98□□□□□ -0.49
LINC01539-201ENST00000587904 CCDC30Q5VVM6 783 aa11.98□□□□□ -0.49
LINC01539-201ENST00000587904 SMC5Q8IY18 1101 aa11.98□□□□□ -0.49
LINC01539-201ENST00000587904 DDX17Q92841 729 aaKnown RBP11.98□□□□□ -0.49
LINC01539-201ENST00000587904 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.97□□□□□ -0.49
LINC01539-201ENST00000587904 MIS18AQ9NYP9 233 aa11.97□□□□□ -0.49
LINC01539-201ENST00000587904 PXDNLA1KZ92 1463 aa11.97□□□□□ -0.49
LINC01539-201ENST00000587904 SIPA1L3O60292 1781 aaPredicted RBP11.97□□□□□ -0.49
LINC01539-201ENST00000587904 TEFQ10587 303 aa11.96□□□□□ -0.49
LINC01539-201ENST00000587904 SKAP1Q86WV1 359 aa11.96□□□□□ -0.49
LINC01539-201ENST00000587904 PDZRN3Q9UPQ7 1066 aa11.96□□□□□ -0.49
LINC01539-201ENST00000587904 PKD1L3Q7Z443 1732 aa11.96□□□□□ -0.49
LINC01539-201ENST00000587904 SLC4A2P04920 1241 aa11.96□□□□□ -0.5
LINC01539-201ENST00000587904 RAPGEF4Q8WZA2 1011 aa11.96□□□□□ -0.5
LINC01539-201ENST00000587904 FSD2A1L4K1 749 aa11.95□□□□□ -0.5
LINC01539-201ENST00000587904 DMTNQ08495 405 aa11.95□□□□□ -0.5
LINC01539-201ENST00000587904 GCC1Q96CN9 775 aa11.95□□□□□ -0.5
LINC01539-201ENST00000587904 ESPNB1AK53 854 aa11.95□□□□□ -0.5
LINC01539-201ENST00000587904 CCT4P50991 539 aaKnown RBP11.95□□□□□ -0.5
LINC01539-201ENST00000587904 C8orf34Q49A92 452 aa11.95□□□□□ -0.5
LINC01539-201ENST00000587904 TEX2Q8IWB9 1127 aa11.95□□□□□ -0.5
LINC01539-201ENST00000587904 PARP4Q9UKK3 1724 aaKnown RBP11.94□□□□□ -0.5
LINC01539-201ENST00000587904 RNMTO43148 476 aaKnown RBP11.94□□□□□ -0.5
LINC01539-201ENST00000587904 CHRM1P11229 460 aaPredicted RBP11.94□□□□□ -0.5
LINC01539-201ENST00000587904 TATP17735 454 aaPredicted RBP11.94□□□□□ -0.5
LINC01539-201ENST00000587904 NLRP2Q9NX02 1062 aa11.94□□□□□ -0.5
LINC01539-201ENST00000587904 SPG7Q9UQ90 795 aa11.94□□□□□ -0.5
LINC01539-201ENST00000587904 SCN11AQ9UI33 1791 aa11.93□□□□□ -0.5
LINC01539-201ENST00000587904 MRC1P22897 1456 aa11.93□□□□□ -0.5
LINC01539-201ENST00000587904 MEGF6O75095 1541 aa11.93□□□□□ -0.5
LINC01539-201ENST00000587904 GOLGA6L3A6NEY3 463 aa11.93□□□□□ -0.5
LINC01539-201ENST00000587904 CSB-PGBD3P0DP91 1061 aa11.93□□□□□ -0.5
LINC01539-201ENST00000587904 XRCC6P12956 609 aaKnown RBP eCLIP11.93□□□□□ -0.5
LINC01539-201ENST00000587904 EIF4A1P60842 406 aaKnown RBP11.93□□□□□ -0.5
LINC01539-201ENST00000587904 CABLES1Q8TDN4 633 aa11.93□□□□□ -0.5
LINC01539-201ENST00000587904 LGR6Q9HBX8 967 aa11.93□□□□□ -0.5
LINC01539-201ENST00000587904 BTBD11A6QL63 1104 aa11.92□□□□□ -0.5
LINC01539-201ENST00000587904 FLIIQ13045 1269 aa11.92□□□□□ -0.5
LINC01539-201ENST00000587904 HDGFL1Q5TGJ6 251 aa11.92□□□□□ -0.5
LINC01539-201ENST00000587904 TMEM51Q9NW97 253 aa11.92□□□□□ -0.5
LINC01539-201ENST00000587904 KIF20AO95235 890 aa11.91□□□□□ -0.5
LINC01539-201ENST00000587904 NUCB1Q02818 461 aa11.91□□□□□ -0.5
LINC01539-201ENST00000587904 MPRIPQ6WCQ1 1025 aa11.91□□□□□ -0.5
LINC01539-201ENST00000587904 ATP10DQ9P241 1426 aa11.91□□□□□ -0.5
LINC01539-201ENST00000587904 COL5A2P05997 1499 aaPredicted RBP11.91□□□□□ -0.5
LINC01539-201ENST00000587904 RPAP2Q8IXW5 612 aaPredicted RBP11.91□□□□□ -0.5
LINC01539-201ENST00000587904 WDR17Q8IZU2 1322 aa11.91□□□□□ -0.5
LINC01539-201ENST00000587904 PRDM11Q9NQV5 511 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms