RNA–Protein interactions for RNA: ENST00000583080.1

SREBF1-221, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 5

Gene SREBF1, Length 482 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-221ENST00000583080 ATG3Q9NT62 314 aa22.4■■□□□ 1.18
SREBF1-221ENST00000583080 EIF4A2Q14240 407 aaKnown RBP22.39■■□□□ 1.17
SREBF1-221ENST00000583080 PXDNLA1KZ92 1463 aa22.38■■□□□ 1.17
SREBF1-221ENST00000583080 KIF13BQ9NQT8 1826 aa22.37■■□□□ 1.17
SREBF1-221ENST00000583080 TNNT2P45379 298 aaPredicted RBP22.37■■□□□ 1.17
SREBF1-221ENST00000583080 MMP10P09238 476 aa22.36■■□□□ 1.17
SREBF1-221ENST00000583080 SLC4A9Q96Q91 983 aa22.36■■□□□ 1.17
SREBF1-221ENST00000583080 COL5A3P25940 1745 aaPredicted RBP22.35■■□□□ 1.17
SREBF1-221ENST00000583080 POLR3GLQ9BT43 218 aa22.35■■□□□ 1.17
SREBF1-221ENST00000583080 N4BP2Q86UW6 1770 aaPredicted RBP22.35■■□□□ 1.17
SREBF1-221ENST00000583080 ZNF831Q5JPB2 1677 aa22.34■■□□□ 1.17
SREBF1-221ENST00000583080 KDM6AO15550 1401 aaPredicted RBP22.33■■□□□ 1.17
SREBF1-221ENST00000583080 C10orf71Q711Q0 1435 aa22.33■■□□□ 1.17
SREBF1-221ENST00000583080 PLEKHG2Q9H7P9 1386 aa22.33■■□□□ 1.17
SREBF1-221ENST00000583080 HSPA6P17066 643 aa22.32■■□□□ 1.16
SREBF1-221ENST00000583080 C4AP0C0L4 1744 aa22.31■■□□□ 1.16
SREBF1-221ENST00000583080 KIF3CO14782 793 aa22.3■■□□□ 1.16
SREBF1-221ENST00000583080 TRIM26Q12899 539 aaPredicted RBP22.3■■□□□ 1.16
SREBF1-221ENST00000583080 IFFO2Q5TF58 517 aa22.3■■□□□ 1.16
SREBF1-221ENST00000583080 RBM42Q9BTD8 480 aaKnown RBP22.3■■□□□ 1.16
SREBF1-221ENST00000583080 RTCBQ9Y3I0 505 aaKnown RBP22.3■■□□□ 1.16
SREBF1-221ENST00000583080 TRAPPC3LQ5T215 181 aa22.29■■□□□ 1.16
SREBF1-221ENST00000583080 ERVV-2B6SEH9 535 aa22.28■■□□□ 1.16
SREBF1-221ENST00000583080 MYH14Q7Z406 1995 aaKnown RBP22.28■■□□□ 1.16
SREBF1-221ENST00000583080 CNTNAP4Q9C0A0 1308 aa22.28■■□□□ 1.16
SREBF1-221ENST00000583080 A0A0G2JLW4 131 aa22.27■■□□□ 1.16
SREBF1-221ENST00000583080 ARHGEF1Q92888 912 aaKnown RBP22.27■■□□□ 1.16
SREBF1-221ENST00000583080 DCAF5Q96JK2 942 aa22.27■■□□□ 1.16
SREBF1-221ENST00000583080 BRCA1P38398 1863 aaKnown RBP22.26■■□□□ 1.15
SREBF1-221ENST00000583080 GYS1P13807 737 aa22.26■■□□□ 1.15
SREBF1-221ENST00000583080 ZNF530Q6P9A1 599 aaPredicted RBP22.26■■□□□ 1.15
SREBF1-221ENST00000583080 BCS1LQ9Y276 419 aa22.26■■□□□ 1.15
SREBF1-221ENST00000583080 ADRA2BP18089 450 aa22.25■■□□□ 1.15
SREBF1-221ENST00000583080 TGFB2P61812 414 aa22.25■■□□□ 1.15
SREBF1-221ENST00000583080 RC3H1Q5TC82 1133 aaKnown RBP22.25■■□□□ 1.15
SREBF1-221ENST00000583080 AEBP1Q8IUX7 1158 aa22.25■■□□□ 1.15
SREBF1-221ENST00000583080 NLGN1Q8N2Q7 840 aa22.25■■□□□ 1.15
SREBF1-221ENST00000583080 TJP1Q07157 1748 aa22.24■■□□□ 1.15
SREBF1-221ENST00000583080 HSP90AB1P08238 724 aaKnown RBP22.24■■□□□ 1.15
SREBF1-221ENST00000583080 DPEP1P16444 411 aa22.24■■□□□ 1.15
SREBF1-221ENST00000583080 PLEKHO1Q53GL0 409 aaPredicted RBP22.24■■□□□ 1.15
SREBF1-221ENST00000583080 TIMELESSQ9UNS1 1208 aa22.24■■□□□ 1.15
SREBF1-221ENST00000583080 RPS6KA4O75676 772 aa22.23■■□□□ 1.15
SREBF1-221ENST00000583080 CABP4P57796 275 aa22.23■■□□□ 1.15
SREBF1-221ENST00000583080 CCDC87Q9NVE4 849 aa22.23■■□□□ 1.15
SREBF1-221ENST00000583080 RFC4P35249 363 aa22.22■■□□□ 1.15
SREBF1-221ENST00000583080 PANK3Q9H999 370 aa22.22■■□□□ 1.15
SREBF1-221ENST00000583080 PTCD1O75127 700 aaKnown RBP22.2■■□□□ 1.14
SREBF1-221ENST00000583080 ARHGAP27Q6ZUM4 889 aa22.2■■□□□ 1.14
SREBF1-221ENST00000583080 PARP3Q9Y6F1 533 aa22.2■■□□□ 1.14
SREBF1-221ENST00000583080 FCHSD2O94868 740 aa22.19■■□□□ 1.14
SREBF1-221ENST00000583080 AMOTQ4VCS5 1084 aa22.19■■□□□ 1.14
SREBF1-221ENST00000583080 SRP68Q9UHB9 627 aaKnown RBP22.19■■□□□ 1.14
SREBF1-221ENST00000583080 ARFGEF1Q9Y6D6 1849 aa22.19■■□□□ 1.14
SREBF1-221ENST00000583080 ADAMTS7Q9UKP4 1686 aa22.18■■□□□ 1.14
SREBF1-221ENST00000583080 HSPA5P11021 654 aaKnown RBP22.18■■□□□ 1.14
SREBF1-221ENST00000583080 CRKLP46109 303 aaKnown RBP22.18■■□□□ 1.14
SREBF1-221ENST00000583080 MTHFSP49914 203 aa22.18■■□□□ 1.14
SREBF1-221ENST00000583080 KCNA3P22001 575 aa22.17■■□□□ 1.14
SREBF1-221ENST00000583080 DDR1Q08345 913 aa22.17■■□□□ 1.14
SREBF1-221ENST00000583080 C1orf141Q5JVX7 400 aa22.17■■□□□ 1.14
SREBF1-221ENST00000583080 NMRK2Q9NPI5 230 aa22.17■■□□□ 1.14
SREBF1-221ENST00000583080 SCN11AQ9UI33 1791 aa22.17■■□□□ 1.14
SREBF1-221ENST00000583080 USP42Q9H9J4 1324 aaKnown RBP22.16■■□□□ 1.14
SREBF1-221ENST00000583080 FKBP8Q14318 412 aa22.16■■□□□ 1.14
SREBF1-221ENST00000583080 NFATC2IPQ8NCF5 419 aa22.16■■□□□ 1.14
SREBF1-221ENST00000583080 SULT6B1Q6IMI4 303 aa22.15■■□□□ 1.14
SREBF1-221ENST00000583080 MORC1Q86VD1 984 aa22.15■■□□□ 1.14
SREBF1-221ENST00000583080 TOMM70O94826 608 aa22.14■■□□□ 1.13
SREBF1-221ENST00000583080 EIF4G2P78344 907 aaKnown RBP eCLIP22.14■■□□□ 1.13
SREBF1-221ENST00000583080 CLSPNQ9HAW4 1339 aa22.13■■□□□ 1.13
SREBF1-221ENST00000583080 C9orf131Q5VYM1 1079 aa22.13■■□□□ 1.13
SREBF1-221ENST00000583080 APLP1P51693 650 aa22.12■■□□□ 1.13
SREBF1-221ENST00000583080 PCGF6Q9BYE7 350 aa22.12■■□□□ 1.13
SREBF1-221ENST00000583080 IL13P35225 146 aa22.11■■□□□ 1.13
SREBF1-221ENST00000583080 INTS5Q6P9B9 1019 aaKnown RBP22.11■■□□□ 1.13
SREBF1-221ENST00000583080 PIM2Q9P1W9 311 aa22.11■■□□□ 1.13
SREBF1-221ENST00000583080 MRC1P22897 1456 aa22.1■■□□□ 1.13
SREBF1-221ENST00000583080 CHRNA5P30532 468 aa22.1■■□□□ 1.13
SREBF1-221ENST00000583080 DNAJC10Q8IXB1 793 aa22.1■■□□□ 1.13
SREBF1-221ENST00000583080 KCPQ6ZWJ8 1503 aa22.1■■□□□ 1.13
SREBF1-221ENST00000583080 WDR90Q96KV7 1748 aa22.09■■□□□ 1.13
SREBF1-221ENST00000583080 POLRMTO00411 1230 aaKnown RBP22.09■■□□□ 1.13
SREBF1-221ENST00000583080 DALRD3Q5D0E6 543 aaKnown RBP22.09■■□□□ 1.13
SREBF1-221ENST00000583080 VIRMAQ69YN4 1812 aaKnown RBP22.08■■□□□ 1.12
SREBF1-221ENST00000583080 SOS1Q07889 1333 aaPredicted RBP22.07■■□□□ 1.12
SREBF1-221ENST00000583080 DNAJC5GQ8N7S2 189 aa22.07■■□□□ 1.12
SREBF1-221ENST00000583080 AKAP4Q5JQC9 854 aa22.06■■□□□ 1.12
SREBF1-221ENST00000583080 USPL1Q5W0Q7 1092 aa22.06■■□□□ 1.12
SREBF1-221ENST00000583080 SLC52A2Q9HAB3 445 aa22.06■■□□□ 1.12
SREBF1-221ENST00000583080 LGR6Q9HBX8 967 aa22.06■■□□□ 1.12
SREBF1-221ENST00000583080 RNF181Q9P0P0 153 aa22.06■■□□□ 1.12
SREBF1-221ENST00000583080 AFDNP55196 1824 aaKnown RBP22.06■■□□□ 1.12
SREBF1-221ENST00000583080 TM4SF1P30408 202 aa22.05■■□□□ 1.12
SREBF1-221ENST00000583080 SLC39A6Q13433 755 aa22.05■■□□□ 1.12
SREBF1-221ENST00000583080 RBM46Q8TBY0 533 aaKnown RBP22.05■■□□□ 1.12
SREBF1-221ENST00000583080 KNSTRNQ9Y448 316 aa22.05■■□□□ 1.12
SREBF1-221ENST00000583080 SBF1O95248 1867 aa22.05■■□□□ 1.12
SREBF1-221ENST00000583080 NRXN2Q9P2S2 1712 aa22.03■■□□□ 1.12
SREBF1-221ENST00000583080 COL15A1P39059 1388 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms