RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 NLGN1Q8N2Q7 840 aa17.79■□□□□ 0.44
SS18-219ENST00000581570 CICQ96RK0 1608 aaPredicted RBP17.79■□□□□ 0.44
SS18-219ENST00000581570 PPM1GO15355 546 aaPredicted RBP17.78■□□□□ 0.44
SS18-219ENST00000581570 ATG3Q9NT62 314 aa17.78■□□□□ 0.44
SS18-219ENST00000581570 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.78■□□□□ 0.447e-7■■■□□ 14.8
SS18-219ENST00000581570 RTCBQ9Y3I0 505 aaKnown RBP17.78■□□□□ 0.44
SS18-219ENST00000581570 ITGB4P16144 1822 aa17.77■□□□□ 0.44
SS18-219ENST00000581570 FCHSD2O94868 740 aa17.77■□□□□ 0.44
SS18-219ENST00000581570 DPEP1P16444 411 aa17.77■□□□□ 0.44
SS18-219ENST00000581570 IFNL2Q8IZJ0 200 aa17.77■□□□□ 0.44
SS18-219ENST00000581570 CCDC87Q9NVE4 849 aa17.77■□□□□ 0.44
SS18-219ENST00000581570 PHKG2P15735 406 aa17.76■□□□□ 0.43
SS18-219ENST00000581570 RBM46Q8TBY0 533 aaKnown RBP17.76■□□□□ 0.43
SS18-219ENST00000581570 EYA1Q99502 592 aa17.76■□□□□ 0.43
SS18-219ENST00000581570 MAP2P11137 1827 aaKnown RBP17.75■□□□□ 0.43
SS18-219ENST00000581570 NCAPD2Q15021 1401 aa17.75■□□□□ 0.43
SS18-219ENST00000581570 C16orf71Q8IYS4 520 aaPredicted RBP17.75■□□□□ 0.43
SS18-219ENST00000581570 C9orf131Q5VYM1 1079 aa17.74■□□□□ 0.43
SS18-219ENST00000581570 ARHGEF1Q92888 912 aaKnown RBP17.74■□□□□ 0.43
SS18-219ENST00000581570 PKD1L3Q7Z443 1732 aa17.74■□□□□ 0.43
SS18-219ENST00000581570 WASHC2AQ641Q2 1341 aa17.73■□□□□ 0.43
SS18-219ENST00000581570 C10orf71Q711Q0 1435 aa17.73■□□□□ 0.43
SS18-219ENST00000581570 CDCA8Q53HL2 280 aa17.73■□□□□ 0.43
SS18-219ENST00000581570 RC3H1Q5TC82 1133 aaKnown RBP17.73■□□□□ 0.43
SS18-219ENST00000581570 KLRG1Q96E93 195 aa17.73■□□□□ 0.43
SS18-219ENST00000581570 RBM42Q9BTD8 480 aaKnown RBP17.73■□□□□ 0.43
SS18-219ENST00000581570 CARD14Q9BXL6 1004 aa17.73■□□□□ 0.43
SS18-219ENST00000581570 PARP3Q9Y6F1 533 aa17.73■□□□□ 0.43
SS18-219ENST00000581570 GYS1P13807 737 aa17.72■□□□□ 0.43
SS18-219ENST00000581570 RFC4P35249 363 aa17.72■□□□□ 0.43
SS18-219ENST00000581570 HTRA3P83110 453 aa17.72■□□□□ 0.43
SS18-219ENST00000581570 SLC4A9Q96Q91 983 aa17.72■□□□□ 0.43
SS18-219ENST00000581570 KCNA3P22001 575 aa17.71■□□□□ 0.43
SS18-219ENST00000581570 FSTL1Q12841 308 aa17.71■□□□□ 0.43
SS18-219ENST00000581570 COL13A1Q5TAT6 717 aaPredicted RBP17.71■□□□□ 0.43
SS18-219ENST00000581570 RPS6KA4O75676 772 aa17.7■□□□□ 0.42
SS18-219ENST00000581570 JMYQ8N9B5 988 aa17.7■□□□□ 0.42
SS18-219ENST00000581570 PIM2Q9P1W9 311 aa17.7■□□□□ 0.42
SS18-219ENST00000581570 KDRP35968 1356 aa17.69■□□□□ 0.42
SS18-219ENST00000581570 PLEKHG2Q9H7P9 1386 aa17.69■□□□□ 0.42
SS18-219ENST00000581570 N4BP2Q86UW6 1770 aaPredicted RBP17.69■□□□□ 0.42
SS18-219ENST00000581570 ERVV-2B6SEH9 535 aa17.69■□□□□ 0.42
SS18-219ENST00000581570 KIF13BQ9NQT8 1826 aa17.69■□□□□ 0.42
SS18-219ENST00000581570 KIAA1551Q9HCM1 1747 aa17.69■□□□□ 0.42
SS18-219ENST00000581570 KDM2BQ8NHM5 1336 aa17.69■□□□□ 0.42
SS18-219ENST00000581570 CNTNAP4Q9C0A0 1308 aa17.69■□□□□ 0.42
SS18-219ENST00000581570 DALRD3Q5D0E6 543 aaKnown RBP17.67■□□□□ 0.42
SS18-219ENST00000581570 DCAF5Q96JK2 942 aa17.67■□□□□ 0.42
SS18-219ENST00000581570 RRAGCQ9HB90 399 aa17.67■□□□□ 0.42
SS18-219ENST00000581570 RNF181Q9P0P0 153 aa17.67■□□□□ 0.42
SS18-219ENST00000581570 POLKQ9UBT6 870 aa17.67■□□□□ 0.42
SS18-219ENST00000581570 KIF20BQ96Q89 1820 aa17.67■□□□□ 0.42
SS18-219ENST00000581570 CAPN15O75808 1086 aa17.66■□□□□ 0.42
SS18-219ENST00000581570 HSP90AB1P08238 724 aaKnown RBP17.66■□□□□ 0.42
SS18-219ENST00000581570 C4AP0C0L4 1744 aa17.65■□□□□ 0.42
SS18-219ENST00000581570 WDR90Q96KV7 1748 aa17.65■□□□□ 0.42
SS18-219ENST00000581570 EIF4A2Q14240 407 aaKnown RBP17.65■□□□□ 0.42
SS18-219ENST00000581570 KCPQ6ZWJ8 1503 aa17.65■□□□□ 0.42
SS18-219ENST00000581570 CABP4P57796 275 aa17.64■□□□□ 0.41
SS18-219ENST00000581570 TNS4Q8IZW8 715 aa17.64■□□□□ 0.41
SS18-219ENST00000581570 FKBP8Q14318 412 aa17.63■□□□□ 0.41
SS18-219ENST00000581570 PLEKHO1Q53GL0 409 aaPredicted RBP17.63■□□□□ 0.41
SS18-219ENST00000581570 SRP68Q9UHB9 627 aaKnown RBP17.63■□□□□ 0.41
SS18-219ENST00000581570 PTCD1O75127 700 aaKnown RBP17.62■□□□□ 0.41
SS18-219ENST00000581570 CHRNA5P30532 468 aa17.62■□□□□ 0.41
SS18-219ENST00000581570 DDR1Q08345 913 aa17.62■□□□□ 0.41
SS18-219ENST00000581570 SMC1BQ8NDV3 1235 aa17.62■□□□□ 0.41
SS18-219ENST00000581570 CRKLP46109 303 aaKnown RBP17.61■□□□□ 0.41
SS18-219ENST00000581570 TNNT2P45379 298 aaPredicted RBP17.6■□□□□ 0.41
SS18-219ENST00000581570 ZNF530Q6P9A1 599 aaPredicted RBP17.6■□□□□ 0.41
SS18-219ENST00000581570 USP42Q9H9J4 1324 aaKnown RBP17.6■□□□□ 0.41
SS18-219ENST00000581570 PRELPP51888 382 aa17.59■□□□□ 0.41
SS18-219ENST00000581570 AMOTQ4VCS5 1084 aa17.59■□□□□ 0.41
SS18-219ENST00000581570 ZNF831Q5JPB2 1677 aa17.58■□□□□ 0.41
SS18-219ENST00000581570 MTHFSP49914 203 aa17.58■□□□□ 0.4
SS18-219ENST00000581570 POTEDQ86YR6 584 aa17.58■□□□□ 0.4
SS18-219ENST00000581570 BRCA1P38398 1863 aaKnown RBP17.58■□□□□ 0.4
SS18-219ENST00000581570 ANKRD26Q9UPS8 1709 aa17.58■□□□□ 0.4
SS18-219ENST00000581570 KDM6AO15550 1401 aaPredicted RBP17.57■□□□□ 0.4
SS18-219ENST00000581570 POLRMTO00411 1230 aaKnown RBP17.57■□□□□ 0.4
SS18-219ENST00000581570 TM4SF1P30408 202 aa17.57■□□□□ 0.4
SS18-219ENST00000581570 NFATC2IPQ8NCF5 419 aa17.57■□□□□ 0.4
SS18-219ENST00000581570 ARFGEF1Q9Y6D6 1849 aa17.56■□□□□ 0.4
SS18-219ENST00000581570 RASSF7Q02833 373 aa17.56■□□□□ 0.4
SS18-219ENST00000581570 C1orf141Q5JVX7 400 aa17.56■□□□□ 0.4
SS18-219ENST00000581570 COL5A3P25940 1745 aaPredicted RBP17.55■□□□□ 0.4
SS18-219ENST00000581570 ZC3H4Q9UPT8 1303 aaKnown RBP17.55■□□□□ 0.4
SS18-219ENST00000581570 ZPR1O75312 459 aa17.55■□□□□ 0.4
SS18-219ENST00000581570 VEGFAP15692 232 aaPredicted RBP17.55■□□□□ 0.4
SS18-219ENST00000581570 INTS5Q6P9B9 1019 aaKnown RBP17.55■□□□□ 0.4
SS18-219ENST00000581570 GLTPD2A6NH11 291 aa17.54■□□□□ 0.4
SS18-219ENST00000581570 HSPA1AP0DMV8 641 aaKnown RBP17.54■□□□□ 0.4
SS18-219ENST00000581570 HSPA1BP0DMV9 641 aaKnown RBP17.54■□□□□ 0.4
SS18-219ENST00000581570 LMNB1P20700 586 aa17.54■□□□□ 0.4
SS18-219ENST00000581570 USPL1Q5W0Q7 1092 aa17.54■□□□□ 0.4
SS18-219ENST00000581570 MYH14Q7Z406 1995 aaKnown RBP17.53■□□□□ 0.4
SS18-219ENST00000581570 NCBP3Q53F19 620 aaKnown RBP17.53■□□□□ 0.4
SS18-219ENST00000581570 CNKSR2Q8WXI2 1034 aa17.52■□□□□ 0.4
SS18-219ENST00000581570 POLR3GLQ9BT43 218 aa17.52■□□□□ 0.4
SS18-219ENST00000581570 AEBP1Q8IUX7 1158 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms