RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SERTAD1Q9UHV2 236 aa8.85□□□□□ -0.99
SMCHD1-204ENST00000581226 TMEM229AB2RXF0 380 aa8.84□□□□□ -0.99
SMCHD1-204ENST00000581226 TREML4Q6UXN2 200 aa8.84□□□□□ -0.99
SMCHD1-204ENST00000581226 SIX5Q8N196 739 aa8.84□□□□□ -0.99
SMCHD1-204ENST00000581226 SENP2Q9HC62 589 aa8.84□□□□□ -0.99
SMCHD1-204ENST00000581226 GMPR2Q9P2T1 348 aaKnown RBP8.84□□□□□ -0.99
SMCHD1-204ENST00000581226 TTLL8A6PVC2 850 aa8.83□□□□□ -1
SMCHD1-204ENST00000581226 SFI1A8K8P3 1242 aa8.83□□□□□ -1
SMCHD1-204ENST00000581226 WASLO00401 505 aaPredicted RBP8.83□□□□□ -1
SMCHD1-204ENST00000581226 BACH1O14867 736 aa8.83□□□□□ -1
SMCHD1-204ENST00000581226 ATG7O95352 703 aa8.83□□□□□ -1
SMCHD1-204ENST00000581226 DPYDQ12882 1025 aa8.83□□□□□ -1
SMCHD1-204ENST00000581226 ANKMY2Q8IV38 441 aa8.83□□□□□ -1
SMCHD1-204ENST00000581226 ZNF358Q9NW07 568 aa8.83□□□□□ -1
SMCHD1-204ENST00000581226 NOVA2Q9UNW9 492 aaKnown RBP8.83□□□□□ -1
SMCHD1-204ENST00000581226 SOS2Q07890 1332 aaPredicted RBP8.82□□□□□ -1
SMCHD1-204ENST00000581226 DKK1O94907 266 aa8.82□□□□□ -1
SMCHD1-204ENST00000581226 SEC13P55735 322 aa8.82□□□□□ -1
SMCHD1-204ENST00000581226 CENPCQ03188 943 aa8.82□□□□□ -1
SMCHD1-204ENST00000581226 SLC27A3Q5K4L6 730 aa8.82□□□□□ -1
SMCHD1-204ENST00000581226 FAM200AQ8TCP9 573 aa8.82□□□□□ -1
SMCHD1-204ENST00000581226 KIFC2Q96AC6 838 aa8.82□□□□□ -1
SMCHD1-204ENST00000581226 LOC100996750A0A140TA64 210 aa8.81□□□□□ -1
SMCHD1-204ENST00000581226 FIGNL2A6NMB9 653 aa8.81□□□□□ -1
SMCHD1-204ENST00000581226 RNF144AP50876 292 aaPredicted RBP8.81□□□□□ -1
SMCHD1-204ENST00000581226 ELOAQ14241 798 aaKnown RBP8.81□□□□□ -1
SMCHD1-204ENST00000581226 SLC4A9Q96Q91 983 aa8.81□□□□□ -1
SMCHD1-204ENST00000581226 KRTAP4-6Q9BYQ5 205 aa8.81□□□□□ -1
SMCHD1-204ENST00000581226 HRH3Q9Y5N1 445 aa8.81□□□□□ -1
SMCHD1-204ENST00000581226 C11orf95C9JLR9 678 aaPredicted RBP8.8□□□□□ -1
SMCHD1-204ENST00000581226 GPC1P35052 558 aa8.8□□□□□ -1
SMCHD1-204ENST00000581226 SMTNP53814 917 aa8.8□□□□□ -1
SMCHD1-204ENST00000581226 TLR1Q15399 786 aa8.8□□□□□ -1
SMCHD1-204ENST00000581226 FOXD4L5Q5VV16 416 aaPredicted RBP8.8□□□□□ -1
SMCHD1-204ENST00000581226 RNF217Q8TC41 542 aa8.8□□□□□ -1
SMCHD1-204ENST00000581226 TRIM47Q96LD4 638 aa8.8□□□□□ -1
SMCHD1-204ENST00000581226 ARXQ96QS3 562 aa8.8□□□□□ -1
SMCHD1-204ENST00000581226 MAN1A2O60476 641 aa8.79□□□□□ -1
SMCHD1-204ENST00000581226 ZSCAN10Q96SZ4 725 aaPredicted RBP8.79□□□□□ -1
SMCHD1-204ENST00000581226 GRIP2Q9C0E4 1043 aa8.79□□□□□ -1
SMCHD1-204ENST00000581226 ZMIZ1Q9ULJ6 1067 aa8.79□□□□□ -1
SMCHD1-204ENST00000581226 A6NJY4 79 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 M0R2N6 131 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 SNRPBP14678 240 aaKnown RBP8.78□□□□□ -1
SMCHD1-204ENST00000581226 GTF2E1P29083 439 aaPredicted RBP8.78□□□□□ -1
SMCHD1-204ENST00000581226 LCE2AQ5TA79 106 aaPredicted RBP8.78□□□□□ -1
SMCHD1-204ENST00000581226 TMEM214Q6NUQ4 689 aaKnown RBP8.78□□□□□ -1
SMCHD1-204ENST00000581226 LYSMD3Q7Z3D4 306 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 PRICKLE2Q7Z3G6 844 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 TNS4Q8IZW8 715 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 TSEN2Q8NCE0 465 aaKnown RBP8.78□□□□□ -1
SMCHD1-204ENST00000581226 STK32AQ8WU08 396 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 HINFPQ9BQA5 517 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 FHDC1Q9C0D6 1143 aaPredicted RBP8.78□□□□□ -1
SMCHD1-204ENST00000581226 DNMT3LQ9UJW3 386 aa8.78□□□□□ -1
SMCHD1-204ENST00000581226 SOBPA7XYQ1 873 aa8.77□□□□□ -1.01
SMCHD1-204ENST00000581226 CSB-PGBD3P0DP91 1061 aa8.77□□□□□ -1.01
SMCHD1-204ENST00000581226 CDK2AP1O14519 115 aa8.76□□□□□ -1.01
SMCHD1-204ENST00000581226 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.76□□□□□ -1.015e-6■□□□□ 9.7
SMCHD1-204ENST00000581226 MTFR1Q15390 333 aa8.75□□□□□ -1.01
SMCHD1-204ENST00000581226 GNASQ5JWF2 1037 aa8.75□□□□□ -1.01
SMCHD1-204ENST00000581226 TMEM164Q5U3C3 297 aa8.75□□□□□ -1.01
SMCHD1-204ENST00000581226 PPARGC1BQ86YN6 1023 aaKnown RBP8.75□□□□□ -1.01
SMCHD1-204ENST00000581226 SCHIP1Q9P0W5 487 aaPredicted RBP8.75□□□□□ -1.01
SMCHD1-204ENST00000581226 LGR5O75473 907 aa8.74□□□□□ -1.01
SMCHD1-204ENST00000581226 WFS1O76024 890 aa8.74□□□□□ -1.01
SMCHD1-204ENST00000581226 EPHA4P54764 986 aa8.74□□□□□ -1.01
SMCHD1-204ENST00000581226 POU4F2Q12837 409 aa8.74□□□□□ -1.01
SMCHD1-204ENST00000581226 RHOQP17081 205 aa8.73□□□□□ -1.01
SMCHD1-204ENST00000581226 TBCELQ5QJ74 424 aa8.73□□□□□ -1.01
SMCHD1-204ENST00000581226 NBPF10Q6P3W6 841 aaKnown RBP8.73□□□□□ -1.01
SMCHD1-204ENST00000581226 NBPF15Q8N660 670 aa8.73□□□□□ -1.01
SMCHD1-204ENST00000581226 RHBDD1Q8TEB9 315 aa8.73□□□□□ -1.01
SMCHD1-204ENST00000581226 USP3Q9Y6I4 520 aa8.73□□□□□ -1.01
SMCHD1-204ENST00000581226 SPATA31C2B4DYI2 1134 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 PHKA2P46019 1235 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 FOXK2Q01167 660 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 FAM69CQ0P6D2 419 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 SWI5Q1ZZU3 235 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 TAS1R3Q7RTX0 852 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 SLC9A9Q8IVB4 645 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 NIFKQ9BYG3 293 aaKnown RBP8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 TSPAN10Q9H1Z9 355 aaPredicted RBP8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 CABP1Q9NZU7 370 aa8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 IQSEC3Q9UPP2 1182 aaPredicted RBP8.72□□□□□ -1.01
SMCHD1-204ENST00000581226 C4orf17Q53FE4 359 aa8.71□□□□□ -1.02
SMCHD1-204ENST00000581226 RETREG2Q8NC44 543 aa8.71□□□□□ -1.02
SMCHD1-204ENST00000581226 SCG3Q8WXD2 468 aaKnown RBP8.71□□□□□ -1.02
SMCHD1-204ENST00000581226 PTSQ03393 145 aa8.7□□□□□ -1.02
SMCHD1-204ENST00000581226 ATAD2Q6PL18 1390 aa8.7□□□□□ -1.02
SMCHD1-204ENST00000581226 CARNS1A5YM72 827 aa8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 TMEM88BA6NKF7 163 aa8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 PPP1R12BO60237 982 aaPredicted RBP8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 PRMT3O60678 531 aa8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 PLA2G4AP47712 749 aa8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 WDR44Q5JSH3 913 aa8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 CHMP7Q8WUX9 453 aaPredicted RBP8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 PRIMPOLQ96LW4 560 aa8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 TIMMDC1Q9NPL8 285 aa8.69□□□□□ -1.02
SMCHD1-204ENST00000581226 CHMP3Q9Y3E7 222 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms