RNA–Protein interactions for RNA: ENST00000580997.1

SENP3-204, Transcript of SUMO specific peptidase 3, humanhuman

TSL 2

Gene SENP3, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-204ENST00000580997 GOLGB1Q14789 3259 aaKnown RBP17■□□□□ 0.31
SENP3-204ENST00000580997 LOC102724428A0A0B4J2F2 783 aa17■□□□□ 0.31
SENP3-204ENST00000580997 ERVV-2B6SEH9 535 aa17■□□□□ 0.31
SENP3-204ENST00000580997 HSP90AB1P08238 724 aaKnown RBP17■□□□□ 0.31
SENP3-204ENST00000580997 SIK1P57059 783 aa17■□□□□ 0.31
SENP3-204ENST00000580997 AEBP1Q8IUX7 1158 aa17■□□□□ 0.31
SENP3-204ENST00000580997 ATG3Q9NT62 314 aa16.99■□□□□ 0.31
SENP3-204ENST00000580997 U3KPZ7 1027 aaPredicted RBP16.99■□□□□ 0.31
SENP3-204ENST00000580997 TAF1LQ8IZX4 1826 aa16.98■□□□□ 0.31
SENP3-204ENST00000580997 SULT6B1Q6IMI4 303 aa16.98■□□□□ 0.31
SENP3-204ENST00000580997 C4BP0C0L5 1744 aa16.97■□□□□ 0.31
SENP3-204ENST00000580997 MTHFSP49914 203 aa16.97■□□□□ 0.31
SENP3-204ENST00000580997 AMIGO3Q86WK7 504 aa16.97■□□□□ 0.31
SENP3-204ENST00000580997 ITPK1Q13572 414 aa16.96■□□□□ 0.31
SENP3-204ENST00000580997 ZNF530Q6P9A1 599 aaPredicted RBP16.96■□□□□ 0.31
SENP3-204ENST00000580997 LINC00116Q8NCU8 138 aa16.96■□□□□ 0.31
SENP3-204ENST00000580997 AK7Q96M32 723 aa16.96■□□□□ 0.31
SENP3-204ENST00000580997 NPC1L1Q9UHC9 1359 aa16.96■□□□□ 0.31
SENP3-204ENST00000580997 SSFA2P28290 1259 aa16.95■□□□□ 0.3
SENP3-204ENST00000580997 ATP6V1AP38606 617 aa16.95■□□□□ 0.3
SENP3-204ENST00000580997 KDM6AO15550 1401 aaPredicted RBP16.95■□□□□ 0.3
SENP3-204ENST00000580997 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.94■□□□□ 0.3
SENP3-204ENST00000580997 C1orf141Q5JVX7 400 aa16.93■□□□□ 0.3
SENP3-204ENST00000580997 CC2D1BQ5T0F9 858 aaKnown RBP16.93■□□□□ 0.3
SENP3-204ENST00000580997 SLC4A9Q96Q91 983 aa16.93■□□□□ 0.3
SENP3-204ENST00000580997 CABP4P57796 275 aa16.92■□□□□ 0.3
SENP3-204ENST00000580997 MSL1Q68DK7 614 aa16.92■□□□□ 0.3
SENP3-204ENST00000580997 SMIM5Q71RC9 77 aa16.91■□□□□ 0.3
SENP3-204ENST00000580997 NFATC2IPQ8NCF5 419 aa16.91■□□□□ 0.3
SENP3-204ENST00000580997 NLGN2Q8NFZ4 835 aa16.91■□□□□ 0.3
SENP3-204ENST00000580997 ZNF831Q5JPB2 1677 aa16.91■□□□□ 0.3
SENP3-204ENST00000580997 UBR3Q6ZT12 1888 aa16.9■□□□□ 0.3
SENP3-204ENST00000580997 DIAPH1O60610 1272 aaKnown RBP16.9■□□□□ 0.3
SENP3-204ENST00000580997 PHF14O94880 888 aa16.9■□□□□ 0.3
SENP3-204ENST00000580997 GPR162Q16538 588 aa16.9■□□□□ 0.3
SENP3-204ENST00000580997 RC3H1Q5TC82 1133 aaKnown RBP16.9■□□□□ 0.3
SENP3-204ENST00000580997 CHRDL2Q6WN34 429 aa16.9■□□□□ 0.3
SENP3-204ENST00000580997 KLHL34Q8N239 644 aa16.9■□□□□ 0.3
SENP3-204ENST00000580997 CD2APQ9Y5K6 639 aa16.9■□□□□ 0.3
SENP3-204ENST00000580997 GNPATO15228 680 aa16.89■□□□□ 0.29
SENP3-204ENST00000580997 AKAP4Q5JQC9 854 aa16.89■□□□□ 0.29
SENP3-204ENST00000580997 RBM42Q9BTD8 480 aaKnown RBP16.89■□□□□ 0.29
SENP3-204ENST00000580997 HMOX1P09601 288 aa16.87■□□□□ 0.29
SENP3-204ENST00000580997 CNTNAP4Q9C0A0 1308 aa16.87■□□□□ 0.29
SENP3-204ENST00000580997 TRAPPC3LQ5T215 181 aa16.86■□□□□ 0.29
SENP3-204ENST00000580997 LGR6Q9HBX8 967 aa16.86■□□□□ 0.29
SENP3-204ENST00000580997 RTCBQ9Y3I0 505 aaKnown RBP16.86■□□□□ 0.29
SENP3-204ENST00000580997 PTCD1O75127 700 aaKnown RBP16.85■□□□□ 0.29
SENP3-204ENST00000580997 RPS6KA4O75676 772 aa16.85■□□□□ 0.29
SENP3-204ENST00000580997 MTHFSDQ2M296 383 aaKnown RBP16.85■□□□□ 0.29
SENP3-204ENST00000580997 ZNF784Q8NCA9 323 aaPredicted RBP16.85■□□□□ 0.29
SENP3-204ENST00000580997 SLC52A2Q9HAB3 445 aa16.85■□□□□ 0.29
SENP3-204ENST00000580997 COL3A1P02461 1466 aaPredicted RBP16.85■□□□□ 0.29
SENP3-204ENST00000580997 YBX3P16989 372 aaKnown RBP eCLIP16.84■□□□□ 0.299e-6■□□□□ 10.4
SENP3-204ENST00000580997 RNMTO43148 476 aaKnown RBP16.83■□□□□ 0.28
SENP3-204ENST00000580997 GRIN3BO60391 1043 aa16.83■□□□□ 0.28
SENP3-204ENST00000580997 NLGN1Q8N2Q7 840 aa16.83■□□□□ 0.28
SENP3-204ENST00000580997 ARHGEF1Q92888 912 aaKnown RBP16.83■□□□□ 0.28
SENP3-204ENST00000580997 SCN11AQ9UI33 1791 aa16.82■□□□□ 0.28
SENP3-204ENST00000580997 COL5A3P25940 1745 aaPredicted RBP16.82■□□□□ 0.28
SENP3-204ENST00000580997 MRC1P22897 1456 aa16.81■□□□□ 0.28
SENP3-204ENST00000580997 CHD4Q14839 1912 aa16.81■□□□□ 0.28
SENP3-204ENST00000580997 PELP1Q8IZL8 1130 aaKnown RBP16.81■□□□□ 0.28
SENP3-204ENST00000580997 MMP10P09238 476 aa16.8■□□□□ 0.28
SENP3-204ENST00000580997 GYS1P13807 737 aa16.8■□□□□ 0.28
SENP3-204ENST00000580997 CRKLP46109 303 aaKnown RBP16.8■□□□□ 0.28
SENP3-204ENST00000580997 ADAMTS7Q9UKP4 1686 aa16.8■□□□□ 0.28
SENP3-204ENST00000580997 CICQ96RK0 1608 aaPredicted RBP16.8■□□□□ 0.28
SENP3-204ENST00000580997 RFC4P35249 363 aa16.79■□□□□ 0.28
SENP3-204ENST00000580997 CNGB1Q14028 1251 aaPredicted RBP16.79■□□□□ 0.28
SENP3-204ENST00000580997 INTS5Q6P9B9 1019 aaKnown RBP16.79■□□□□ 0.28
SENP3-204ENST00000580997 U2SURPO15042 1029 aaKnown RBP16.78■□□□□ 0.28
SENP3-204ENST00000580997 MYH14Q7Z406 1995 aaKnown RBP16.78■□□□□ 0.28
SENP3-204ENST00000580997 SLC39A6Q13433 755 aa16.77■□□□□ 0.28
SENP3-204ENST00000580997 VSIG10Q8N0Z9 540 aa16.77■□□□□ 0.28
SENP3-204ENST00000580997 TJP1Q07157 1748 aa16.76■□□□□ 0.27
SENP3-204ENST00000580997 PPP2R1AP30153 589 aa16.76■□□□□ 0.27
SENP3-204ENST00000580997 DNAJC10Q8IXB1 793 aa16.76■□□□□ 0.27
SENP3-204ENST00000580997 IL17REQ8NFR9 667 aa16.76■□□□□ 0.27
SENP3-204ENST00000580997 GAS2L2Q8NHY3 880 aa16.76■□□□□ 0.27
SENP3-204ENST00000580997 CFAP53Q96M91 514 aa16.76■□□□□ 0.27
SENP3-204ENST00000580997 GNAT3A8MTJ3 354 aa16.75■□□□□ 0.27
SENP3-204ENST00000580997 CYP19A1P11511 503 aaPredicted RBP16.75■□□□□ 0.27
SENP3-204ENST00000580997 TGFB2P61812 414 aa16.75■□□□□ 0.27
SENP3-204ENST00000580997 CCDC87Q9NVE4 849 aa16.75■□□□□ 0.27
SENP3-204ENST00000580997 KCPQ6ZWJ8 1503 aa16.75■□□□□ 0.27
SENP3-204ENST00000580997 USP42Q9H9J4 1324 aaKnown RBP16.74■□□□□ 0.27
SENP3-204ENST00000580997 PHACTR3Q96KR7 559 aa16.74■□□□□ 0.27
SENP3-204ENST00000580997 RSPH6AQ9H0K4 717 aa16.74■□□□□ 0.27
SENP3-204ENST00000580997 NUDCQ9Y266 331 aa16.73■□□□□ 0.27
SENP3-204ENST00000580997 SOS1Q07889 1333 aaPredicted RBP16.72■□□□□ 0.27
SENP3-204ENST00000580997 C10orf71Q711Q0 1435 aa16.72■□□□□ 0.27
SENP3-204ENST00000580997 PRKAR2BP31323 418 aa16.72■□□□□ 0.27
SENP3-204ENST00000580997 FKBP8Q14318 412 aa16.72■□□□□ 0.27
SENP3-204ENST00000580997 SRP68Q9UHB9 627 aaKnown RBP16.72■□□□□ 0.27
SENP3-204ENST00000580997 PARP3Q9Y6F1 533 aa16.72■□□□□ 0.27
SENP3-204ENST00000580997 C4AP0C0L4 1744 aa16.72■□□□□ 0.27
SENP3-204ENST00000580997 CEMIPQ8WUJ3 1361 aa16.72■□□□□ 0.27
SENP3-204ENST00000580997 KIF13BQ9NQT8 1826 aa16.72■□□□□ 0.27
SENP3-204ENST00000580997 FCHSD2O94868 740 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms