RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 DPEP1P16444 411 aa13.13□□□□□ -0.31
SMARCD2-208ENST00000580054 HSP90AB2PQ58FF8 381 aa13.13□□□□□ -0.31
SMARCD2-208ENST00000580054 COL5A3P25940 1745 aaPredicted RBP13.13□□□□□ -0.31
SMARCD2-208ENST00000580054 INSRP06213 1382 aa13.12□□□□□ -0.31
SMARCD2-208ENST00000580054 PLEKHG2Q9H7P9 1386 aa13.12□□□□□ -0.31
SMARCD2-208ENST00000580054 FCHSD2O94868 740 aa13.12□□□□□ -0.31
SMARCD2-208ENST00000580054 HMGB2P26583 209 aaKnown RBP13.12□□□□□ -0.31
SMARCD2-208ENST00000580054 C9orf131Q5VYM1 1079 aa13.12□□□□□ -0.31
SMARCD2-208ENST00000580054 C16orf71Q8IYS4 520 aaPredicted RBP13.12□□□□□ -0.31
SMARCD2-208ENST00000580054 TGFB2P61812 414 aa13.11□□□□□ -0.31
SMARCD2-208ENST00000580054 GGNBP2Q9H3C7 697 aa13.11□□□□□ -0.31
SMARCD2-208ENST00000580054 ASAP1Q9ULH1 1129 aa13.11□□□□□ -0.31
SMARCD2-208ENST00000580054 MYH14Q7Z406 1995 aaKnown RBP13.11□□□□□ -0.31
SMARCD2-208ENST00000580054 FSTL1Q12841 308 aa13.1□□□□□ -0.31
SMARCD2-208ENST00000580054 NCAPD2Q15021 1401 aa13.1□□□□□ -0.31
SMARCD2-208ENST00000580054 FLT4P35916 1363 aa13.09□□□□□ -0.31
SMARCD2-208ENST00000580054 KDRP35968 1356 aa13.09□□□□□ -0.31
SMARCD2-208ENST00000580054 ATP6V1AP38606 617 aa13.09□□□□□ -0.31
SMARCD2-208ENST00000580054 PUS7Q96PZ0 661 aaKnown RBP13.09□□□□□ -0.31
SMARCD2-208ENST00000580054 ANKRD26Q9UPS8 1709 aa13.09□□□□□ -0.31
SMARCD2-208ENST00000580054 FYB1O15117 783 aa13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 KCNA3P22001 575 aa13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 TRIM26Q12899 539 aaPredicted RBP13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 NKX1-1Q15270 411 aaPredicted RBP13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 TESK2Q96S53 571 aa13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 RRAGCQ9HB90 399 aa13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 TMOD3Q9NYL9 352 aa13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 ZNF831Q5JPB2 1677 aa13.08□□□□□ -0.32
SMARCD2-208ENST00000580054 HSPA1AP0DMV8 641 aaKnown RBP13.07□□□□□ -0.32
SMARCD2-208ENST00000580054 HSPA1BP0DMV9 641 aaKnown RBP13.07□□□□□ -0.32
SMARCD2-208ENST00000580054 ATG3Q9NT62 314 aa13.07□□□□□ -0.32
SMARCD2-208ENST00000580054 CCDC87Q9NVE4 849 aa13.07□□□□□ -0.32
SMARCD2-208ENST00000580054 RNF181Q9P0P0 153 aa13.07□□□□□ -0.32
SMARCD2-208ENST00000580054 KDM2BQ8NHM5 1336 aa13.07□□□□□ -0.32
SMARCD2-208ENST00000580054 TIAM2Q8IVF5 1701 aa13.06□□□□□ -0.32
SMARCD2-208ENST00000580054 GYS1P13807 737 aa13.06□□□□□ -0.32
SMARCD2-208ENST00000580054 TMF1P82094 1093 aa13.06□□□□□ -0.32
SMARCD2-208ENST00000580054 DCAF5Q96JK2 942 aa13.06□□□□□ -0.32
SMARCD2-208ENST00000580054 SLC4A9Q96Q91 983 aa13.06□□□□□ -0.32
SMARCD2-208ENST00000580054 EMILIN1Q9Y6C2 1016 aa13.06□□□□□ -0.32
SMARCD2-208ENST00000580054 CCDC88AQ3V6T2 1871 aa13.06□□□□□ -0.32
SMARCD2-208ENST00000580054 TRAPPC3LQ5T215 181 aa13.05□□□□□ -0.32
SMARCD2-208ENST00000580054 NLGN1Q8N2Q7 840 aa13.05□□□□□ -0.32
SMARCD2-208ENST00000580054 ARHGEF1Q92888 912 aaKnown RBP13.05□□□□□ -0.32
SMARCD2-208ENST00000580054 RTCBQ9Y3I0 505 aaKnown RBP13.05□□□□□ -0.32
SMARCD2-208ENST00000580054 SMC1BQ8NDV3 1235 aa13.04□□□□□ -0.32
SMARCD2-208ENST00000580054 KIF24Q5T7B8 1368 aa13.04□□□□□ -0.32
SMARCD2-208ENST00000580054 ST20-MTHFSA0A0A6YYL1 179 aa13.03□□□□□ -0.32
SMARCD2-208ENST00000580054 PHKG2P15735 406 aa13.03□□□□□ -0.32
SMARCD2-208ENST00000580054 PIM2Q9P1W9 311 aa13.03□□□□□ -0.32
SMARCD2-208ENST00000580054 SPG7Q9UQ90 795 aa13.03□□□□□ -0.32
SMARCD2-208ENST00000580054 PARP3Q9Y6F1 533 aa13.03□□□□□ -0.32
SMARCD2-208ENST00000580054 TJP1Q07157 1748 aa13.02□□□□□ -0.32
SMARCD2-208ENST00000580054 CHRNA5P30532 468 aa13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 RASSF7Q02833 373 aa13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 DDR1Q08345 913 aa13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 DALRD3Q5D0E6 543 aaKnown RBP13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 CNTNAP4Q9C0A0 1308 aa13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 ADAMTS7Q9UKP4 1686 aa13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 DLEC1Q9Y238 1755 aa13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 AFDNP55196 1824 aaKnown RBP13.02□□□□□ -0.33
SMARCD2-208ENST00000580054 ADRA2BP18089 450 aa13.01□□□□□ -0.33
SMARCD2-208ENST00000580054 RFC4P35249 363 aa13.01□□□□□ -0.33
SMARCD2-208ENST00000580054 RBM42Q9BTD8 480 aaKnown RBP13.01□□□□□ -0.33
SMARCD2-208ENST00000580054 SRP68Q9UHB9 627 aaKnown RBP13.01□□□□□ -0.33
SMARCD2-208ENST00000580054 KDM6AO15550 1401 aaPredicted RBP13□□□□□ -0.33
SMARCD2-208ENST00000580054 TONSLQ96HA7 1378 aa13□□□□□ -0.33
SMARCD2-208ENST00000580054 IFNL2Q8IZJ0 200 aa13□□□□□ -0.33
SMARCD2-208ENST00000580054 EYA1Q99502 592 aa13□□□□□ -0.33
SMARCD2-208ENST00000580054 PPM1GO15355 546 aaPredicted RBP12.99□□□□□ -0.33
SMARCD2-208ENST00000580054 RPS6KA4O75676 772 aa12.99□□□□□ -0.33
SMARCD2-208ENST00000580054 FKBP8Q14318 412 aa12.99□□□□□ -0.33
SMARCD2-208ENST00000580054 RC3H1Q5TC82 1133 aaKnown RBP12.98□□□□□ -0.33
SMARCD2-208ENST00000580054 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.33
SMARCD2-208ENST00000580054 USP42Q9H9J4 1324 aaKnown RBP12.97□□□□□ -0.33
SMARCD2-208ENST00000580054 NRXN2Q9P2S2 1712 aa12.96□□□□□ -0.34
SMARCD2-208ENST00000580054 WASHC2AQ641Q2 1341 aa12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 ZC3H4Q9UPT8 1303 aaKnown RBP12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 GLTPD2A6NH11 291 aa12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 POLRMTO00411 1230 aaKnown RBP12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 SLC34A2O95436 690 aa12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 CRKLP46109 303 aaKnown RBP12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 CARD14Q9BXL6 1004 aa12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 DICER1Q9UPY3 1922 aaKnown RBP12.95□□□□□ -0.34
SMARCD2-208ENST00000580054 VEGFAP15692 232 aaPredicted RBP12.94□□□□□ -0.34
SMARCD2-208ENST00000580054 MKRN1Q9UHC7 482 aaKnown RBP12.94□□□□□ -0.34
SMARCD2-208ENST00000580054 POTECB2RU33 542 aa12.93□□□□□ -0.34
SMARCD2-208ENST00000580054 ERVV-2B6SEH9 535 aa12.93□□□□□ -0.34
SMARCD2-208ENST00000580054 PTCD1O75127 700 aaKnown RBP12.93□□□□□ -0.34
SMARCD2-208ENST00000580054 LMNB1P20700 586 aa12.93□□□□□ -0.34
SMARCD2-208ENST00000580054 PCGF6Q9BYE7 350 aa12.93□□□□□ -0.34
SMARCD2-208ENST00000580054 FOXN1O15353 648 aa12.92□□□□□ -0.34
SMARCD2-208ENST00000580054 COL11A2P13942 1736 aaPredicted RBP12.92□□□□□ -0.34
SMARCD2-208ENST00000580054 EIF4A2Q14240 407 aaKnown RBP12.92□□□□□ -0.34
SMARCD2-208ENST00000580054 ANKRD31Q8N7Z5 1873 aa12.92□□□□□ -0.34
SMARCD2-208ENST00000580054 CARMIL3Q8ND23 1372 aa12.92□□□□□ -0.34
SMARCD2-208ENST00000580054 SCN11AQ9UI33 1791 aa12.92□□□□□ -0.34
SMARCD2-208ENST00000580054 CACNA1SQ13698 1873 aa12.91□□□□□ -0.34
SMARCD2-208ENST00000580054 FER1L6Q2WGJ9 1857 aa12.91□□□□□ -0.34
SMARCD2-208ENST00000580054 VIRMAQ69YN4 1812 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms