RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 UBR3Q6ZT12 1888 aa13.23□□□□□ -0.29
CIITA-207ENST00000571545 NPC1L1Q9UHC9 1359 aa13.22□□□□□ -0.29
CIITA-207ENST00000571545 LOC102724428A0A0B4J2F2 783 aa13.22□□□□□ -0.29
CIITA-207ENST00000571545 SIK1P57059 783 aa13.22□□□□□ -0.29
CIITA-207ENST00000571545 SSFA2P28290 1259 aa13.21□□□□□ -0.29
CIITA-207ENST00000571545 ZNF530Q6P9A1 599 aaPredicted RBP13.21□□□□□ -0.29
CIITA-207ENST00000571545 COL23A1Q86Y22 540 aaPredicted RBP13.2□□□□□ -0.3
CIITA-207ENST00000571545 KLHL34Q8N239 644 aa13.2□□□□□ -0.3
CIITA-207ENST00000571545 SULT6B1Q6IMI4 303 aa13.19□□□□□ -0.3
CIITA-207ENST00000571545 SCN11AQ9UI33 1791 aa13.18□□□□□ -0.3
CIITA-207ENST00000571545 IL13P35225 146 aa13.18□□□□□ -0.3
CIITA-207ENST00000571545 ATP6V1AP38606 617 aa13.18□□□□□ -0.3
CIITA-207ENST00000571545 MTHFSP49914 203 aa13.18□□□□□ -0.3
CIITA-207ENST00000571545 CABP4P57796 275 aa13.18□□□□□ -0.3
CIITA-207ENST00000571545 ASAP1Q9ULH1 1129 aa13.18□□□□□ -0.3
CIITA-207ENST00000571545 CICQ96RK0 1608 aaPredicted RBP13.17□□□□□ -0.3
CIITA-207ENST00000571545 COL5A3P25940 1745 aaPredicted RBP13.17□□□□□ -0.3
CIITA-207ENST00000571545 KDM6AO15550 1401 aaPredicted RBP13.17□□□□□ -0.3
CIITA-207ENST00000571545 PER1O15534 1290 aaPredicted RBP13.17□□□□□ -0.3
CIITA-207ENST00000571545 GPR162Q16538 588 aa13.17□□□□□ -0.3
CIITA-207ENST00000571545 ATG3Q9NT62 314 aa13.17□□□□□ -0.3
CIITA-207ENST00000571545 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.16□□□□□ -0.3
CIITA-207ENST00000571545 GNPATO15228 680 aa13.16□□□□□ -0.3
CIITA-207ENST00000571545 PHF14O94880 888 aa13.16□□□□□ -0.3
CIITA-207ENST00000571545 AKAP4Q5JQC9 854 aa13.16□□□□□ -0.3
CIITA-207ENST00000571545 AEBP1Q8IUX7 1158 aa13.16□□□□□ -0.3
CIITA-207ENST00000571545 CD2APQ9Y5K6 639 aa13.16□□□□□ -0.3
CIITA-207ENST00000571545 DIAPH1O60610 1272 aaKnown RBP13.15□□□□□ -0.3
CIITA-207ENST00000571545 CC2D1BQ5T0F9 858 aaKnown RBP13.15□□□□□ -0.3
CIITA-207ENST00000571545 MSL1Q68DK7 614 aa13.15□□□□□ -0.3
CIITA-207ENST00000571545 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
CIITA-207ENST00000571545 RTCBQ9Y3I0 505 aaKnown RBP13.15□□□□□ -0.3
CIITA-207ENST00000571545 VIRMAQ69YN4 1812 aaKnown RBP13.15□□□□□ -0.3
CIITA-207ENST00000571545 MRC1P22897 1456 aa13.15□□□□□ -0.3
CIITA-207ENST00000571545 CNTNAP4Q9C0A0 1308 aa13.14□□□□□ -0.31
CIITA-207ENST00000571545 GRIN3BO60391 1043 aa13.14□□□□□ -0.31
CIITA-207ENST00000571545 RC3H1Q5TC82 1133 aaKnown RBP13.14□□□□□ -0.31
CIITA-207ENST00000571545 RBM42Q9BTD8 480 aaKnown RBP13.14□□□□□ -0.31
CIITA-207ENST00000571545 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
CIITA-207ENST00000571545 ITPK1Q13572 414 aa13.13□□□□□ -0.31
CIITA-207ENST00000571545 CFAP53Q96M91 514 aa13.13□□□□□ -0.31
CIITA-207ENST00000571545 TRAPPC3LQ5T215 181 aa13.12□□□□□ -0.31
CIITA-207ENST00000571545 PELP1Q8IZL8 1130 aaKnown RBP13.12□□□□□ -0.31
CIITA-207ENST00000571545 ADAMTS7Q9UKP4 1686 aa13.12□□□□□ -0.31
CIITA-207ENST00000571545 NFATC2IPQ8NCF5 419 aa13.11□□□□□ -0.31
CIITA-207ENST00000571545 SLC52A2Q9HAB3 445 aa13.11□□□□□ -0.31
CIITA-207ENST00000571545 COL3A1P02461 1466 aaPredicted RBP13.1□□□□□ -0.31
CIITA-207ENST00000571545 HMOX1P09601 288 aa13.1□□□□□ -0.31
CIITA-207ENST00000571545 NLGN1Q8N2Q7 840 aa13.1□□□□□ -0.31
CIITA-207ENST00000571545 NLGN2Q8NFZ4 835 aa13.1□□□□□ -0.31
CIITA-207ENST00000571545 GAS2L2Q8NHY3 880 aa13.1□□□□□ -0.31
CIITA-207ENST00000571545 C4AP0C0L4 1744 aa13.1□□□□□ -0.31
CIITA-207ENST00000571545 TJP1Q07157 1748 aa13.1□□□□□ -0.31
CIITA-207ENST00000571545 RPS6KA4O75676 772 aa13.09□□□□□ -0.31
CIITA-207ENST00000571545 RFC4P35249 363 aa13.09□□□□□ -0.31
CIITA-207ENST00000571545 KIF13BQ9NQT8 1826 aa13.09□□□□□ -0.31
CIITA-207ENST00000571545 RNMTO43148 476 aaKnown RBP13.08□□□□□ -0.32
CIITA-207ENST00000571545 PTCD1O75127 700 aaKnown RBP13.08□□□□□ -0.32
CIITA-207ENST00000571545 AMIGO3Q86WK7 504 aa13.08□□□□□ -0.32
CIITA-207ENST00000571545 ZNF784Q8NCA9 323 aaPredicted RBP13.08□□□□□ -0.32
CIITA-207ENST00000571545 NUDCQ9Y266 331 aa13.08□□□□□ -0.32
CIITA-207ENST00000571545 MYH14Q7Z406 1995 aaKnown RBP13.08□□□□□ -0.32
CIITA-207ENST00000571545 U2SURPO15042 1029 aaKnown RBP13.07□□□□□ -0.32
CIITA-207ENST00000571545 MMP10P09238 476 aa13.07□□□□□ -0.32
CIITA-207ENST00000571545 CRKLP46109 303 aaKnown RBP13.07□□□□□ -0.32
CIITA-207ENST00000571545 SLC4A9Q96Q91 983 aa13.07□□□□□ -0.32
CIITA-207ENST00000571545 UBR2Q8IWV8 1755 aa13.07□□□□□ -0.32
CIITA-207ENST00000571545 MTHFSDQ2M296 383 aaKnown RBP13.06□□□□□ -0.32
CIITA-207ENST00000571545 TTC5Q8N0Z6 440 aa13.06□□□□□ -0.32
CIITA-207ENST00000571545 ARHGEF1Q92888 912 aaKnown RBP13.06□□□□□ -0.32
CIITA-207ENST00000571545 GNAT3A8MTJ3 354 aa13.05□□□□□ -0.32
CIITA-207ENST00000571545 VSIG10Q8N0Z9 540 aa13.05□□□□□ -0.32
CIITA-207ENST00000571545 CCDC87Q9NVE4 849 aa13.05□□□□□ -0.32
CIITA-207ENST00000571545 C10orf71Q711Q0 1435 aa13.05□□□□□ -0.32
CIITA-207ENST00000571545 KCPQ6ZWJ8 1503 aa13.04□□□□□ -0.32
CIITA-207ENST00000571545 YBX3P16989 372 aaKnown RBP eCLIP13.04□□□□□ -0.32
CIITA-207ENST00000571545 TGFB2P61812 414 aa13.04□□□□□ -0.32
CIITA-207ENST00000571545 TEFQ10587 303 aa13.04□□□□□ -0.32
CIITA-207ENST00000571545 PARP3Q9Y6F1 533 aa13.04□□□□□ -0.32
CIITA-207ENST00000571545 SIPA1L3O60292 1781 aaPredicted RBP13.03□□□□□ -0.32
CIITA-207ENST00000571545 GYS1P13807 737 aa13.03□□□□□ -0.32
CIITA-207ENST00000571545 CNGB1Q14028 1251 aaPredicted RBP13.03□□□□□ -0.32
CIITA-207ENST00000571545 LGR6Q9HBX8 967 aa13.03□□□□□ -0.32
CIITA-207ENST00000571545 USP42Q9H9J4 1324 aaKnown RBP13.03□□□□□ -0.32
CIITA-207ENST00000571545 ZPR1O75312 459 aa13.02□□□□□ -0.33
CIITA-207ENST00000571545 NEFMP07197 916 aa13.02□□□□□ -0.33
CIITA-207ENST00000571545 SMIM5Q71RC9 77 aa13.02□□□□□ -0.33
CIITA-207ENST00000571545 TEX13AQ9BXU3 409 aaPredicted RBP13.02□□□□□ -0.33
CIITA-207ENST00000571545 PXDNLA1KZ92 1463 aa13.02□□□□□ -0.33
CIITA-207ENST00000571545 STARD3NLO95772 234 aa13.01□□□□□ -0.33
CIITA-207ENST00000571545 COL15A1P39059 1388 aa13.01□□□□□ -0.33
CIITA-207ENST00000571545 KIAA1551Q9HCM1 1747 aa13□□□□□ -0.33
CIITA-207ENST00000571545 CEMIPQ8WUJ3 1361 aa13□□□□□ -0.33
CIITA-207ENST00000571545 SOS1Q07889 1333 aaPredicted RBP13□□□□□ -0.33
CIITA-207ENST00000571545 FCHSD2O94868 740 aa13□□□□□ -0.33
CIITA-207ENST00000571545 U2AF1L5P0DN76 240 aaPredicted RBP13□□□□□ -0.33
CIITA-207ENST00000571545 CYP19A1P11511 503 aaPredicted RBP13□□□□□ -0.33
CIITA-207ENST00000571545 PPP2R1AP30153 589 aa13□□□□□ -0.33
CIITA-207ENST00000571545 PRKAR2BP31323 418 aa13□□□□□ -0.33
CIITA-207ENST00000571545 U2AF1Q01081 240 aaKnown RBP eCLIP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms