RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 TFCP2L1Q9NZI6 479 aa10.63□□□□□ -0.71
CDH3-209ENST00000569080 C4AP0C0L4 1744 aa10.62□□□□□ -0.71
CDH3-209ENST00000569080 ERVV-2B6SEH9 535 aa10.62□□□□□ -0.71
CDH3-209ENST00000569080 HSP90AB1P08238 724 aaKnown RBP10.62□□□□□ -0.71
CDH3-209ENST00000569080 LINC00116Q8NCU8 138 aa10.62□□□□□ -0.71
CDH3-209ENST00000569080 SLC4A9Q96Q91 983 aa10.62□□□□□ -0.71
CDH3-209ENST00000569080 UBR2Q8IWV8 1755 aa10.62□□□□□ -0.71
CDH3-209ENST00000569080 DIAPH1O60610 1272 aaKnown RBP10.61□□□□□ -0.71
CDH3-209ENST00000569080 ARXQ96QS3 562 aa10.61□□□□□ -0.71
CDH3-209ENST00000569080 SYT17Q9BSW7 474 aa10.61□□□□□ -0.71
CDH3-209ENST00000569080 SIPA1L3O60292 1781 aaPredicted RBP10.61□□□□□ -0.71
CDH3-209ENST00000569080 MYH14Q7Z406 1995 aaKnown RBP10.61□□□□□ -0.71
CDH3-209ENST00000569080 KCPQ6ZWJ8 1503 aa10.6□□□□□ -0.71
CDH3-209ENST00000569080 HMOX1P09601 288 aa10.6□□□□□ -0.71
CDH3-209ENST00000569080 C1orf141Q5JVX7 400 aa10.59□□□□□ -0.71
CDH3-209ENST00000569080 SMIM5Q71RC9 77 aa10.59□□□□□ -0.71
CDH3-209ENST00000569080 SSFA2P28290 1259 aa10.58□□□□□ -0.72
CDH3-209ENST00000569080 MTHFSDQ2M296 383 aaKnown RBP10.58□□□□□ -0.72
CDH3-209ENST00000569080 AKAP4Q5JQC9 854 aa10.58□□□□□ -0.72
CDH3-209ENST00000569080 AK7Q96M32 723 aa10.58□□□□□ -0.72
CDH3-209ENST00000569080 CNTNAP4Q9C0A0 1308 aa10.58□□□□□ -0.72
CDH3-209ENST00000569080 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.57□□□□□ -0.72
CDH3-209ENST00000569080 HMGB2P26583 209 aaKnown RBP10.57□□□□□ -0.72
CDH3-209ENST00000569080 PPP2R1AP30153 589 aa10.57□□□□□ -0.72
CDH3-209ENST00000569080 ATP6V1AP38606 617 aa10.57□□□□□ -0.72
CDH3-209ENST00000569080 CABP4P57796 275 aa10.57□□□□□ -0.72
CDH3-209ENST00000569080 CNGB1Q14028 1251 aaPredicted RBP10.57□□□□□ -0.72
CDH3-209ENST00000569080 MSL1Q68DK7 614 aa10.57□□□□□ -0.72
CDH3-209ENST00000569080 FLAD1Q8NFF5 587 aa10.57□□□□□ -0.72
CDH3-209ENST00000569080 LGR6Q9HBX8 967 aa10.57□□□□□ -0.72
CDH3-209ENST00000569080 KIAA1551Q9HCM1 1747 aa10.57□□□□□ -0.72
CDH3-209ENST00000569080 KIF13BQ9NQT8 1826 aa10.56□□□□□ -0.72
CDH3-209ENST00000569080 GNPATO15228 680 aa10.56□□□□□ -0.72
CDH3-209ENST00000569080 RNMTO43148 476 aaKnown RBP10.56□□□□□ -0.72
CDH3-209ENST00000569080 POLD1P28340 1107 aa10.56□□□□□ -0.72
CDH3-209ENST00000569080 NFATC2IPQ8NCF5 419 aa10.56□□□□□ -0.72
CDH3-209ENST00000569080 RSPH6AQ9H0K4 717 aa10.56□□□□□ -0.72
CDH3-209ENST00000569080 SLC52A2Q9HAB3 445 aa10.56□□□□□ -0.72
CDH3-209ENST00000569080 PHF14O94880 888 aa10.55□□□□□ -0.72
CDH3-209ENST00000569080 NLGN2Q8NFZ4 835 aa10.55□□□□□ -0.72
CDH3-209ENST00000569080 CHD4Q14839 1912 aa10.54□□□□□ -0.72
CDH3-209ENST00000569080 CEMIPQ8WUJ3 1361 aa10.54□□□□□ -0.72
CDH3-209ENST00000569080 U2SURPO15042 1029 aaKnown RBP10.54□□□□□ -0.72
CDH3-209ENST00000569080 MSH5O43196 834 aa10.54□□□□□ -0.72
CDH3-209ENST00000569080 RC3H1Q5TC82 1133 aaKnown RBP10.54□□□□□ -0.72
CDH3-209ENST00000569080 RBM42Q9BTD8 480 aaKnown RBP10.54□□□□□ -0.72
CDH3-209ENST00000569080 PTCD1O75127 700 aaKnown RBP10.53□□□□□ -0.72
CDH3-209ENST00000569080 ADRA2BP18089 450 aa10.52□□□□□ -0.73
CDH3-209ENST00000569080 PRKAR2BP31323 418 aa10.52□□□□□ -0.73
CDH3-209ENST00000569080 CRKLP46109 303 aaKnown RBP10.52□□□□□ -0.73
CDH3-209ENST00000569080 SLC39A6Q13433 755 aa10.52□□□□□ -0.73
CDH3-209ENST00000569080 IL17REQ8NFR9 667 aa10.52□□□□□ -0.73
CDH3-209ENST00000569080 GAS2L2Q8NHY3 880 aa10.52□□□□□ -0.73
CDH3-209ENST00000569080 PHACTR3Q96KR7 559 aa10.52□□□□□ -0.73
CDH3-209ENST00000569080 CFAP53Q96M91 514 aa10.52□□□□□ -0.73
CDH3-209ENST00000569080 C10orf71Q711Q0 1435 aa10.51□□□□□ -0.73
CDH3-209ENST00000569080 SCN7AQ01118 1682 aa10.51□□□□□ -0.73
CDH3-209ENST00000569080 DLG5Q8TDM6 1919 aa10.51□□□□□ -0.73
CDH3-209ENST00000569080 RPS6KA4O75676 772 aa10.51□□□□□ -0.73
CDH3-209ENST00000569080 KLHL34Q8N239 644 aa10.51□□□□□ -0.73
CDH3-209ENST00000569080 ARHGEF1Q92888 912 aaKnown RBP10.51□□□□□ -0.73
CDH3-209ENST00000569080 RTCBQ9Y3I0 505 aaKnown RBP10.51□□□□□ -0.73
CDH3-209ENST00000569080 BRCA1P38398 1863 aaKnown RBP10.51□□□□□ -0.73
CDH3-209ENST00000569080 GNAT3A8MTJ3 354 aa10.5□□□□□ -0.73
CDH3-209ENST00000569080 GYS1P13807 737 aa10.5□□□□□ -0.73
CDH3-209ENST00000569080 YY1P25490 414 aa10.5□□□□□ -0.73
CDH3-209ENST00000569080 INTS5Q6P9B9 1019 aaKnown RBP10.5□□□□□ -0.73
CDH3-209ENST00000569080 DNAJC10Q8IXB1 793 aa10.5□□□□□ -0.73
CDH3-209ENST00000569080 CD2APQ9Y5K6 639 aa10.5□□□□□ -0.73
CDH3-209ENST00000569080 SOS1Q07889 1333 aaPredicted RBP10.5□□□□□ -0.73
CDH3-209ENST00000569080 PXDNLA1KZ92 1463 aa10.49□□□□□ -0.73
CDH3-209ENST00000569080 MMP10P09238 476 aa10.49□□□□□ -0.73
CDH3-209ENST00000569080 CYP19A1P11511 503 aaPredicted RBP10.49□□□□□ -0.73
CDH3-209ENST00000569080 YBX3P16989 372 aaKnown RBP eCLIP10.49□□□□□ -0.73
CDH3-209ENST00000569080 TRAPPC3LQ5T215 181 aa10.49□□□□□ -0.73
CDH3-209ENST00000569080 USP42Q9H9J4 1324 aaKnown RBP10.49□□□□□ -0.73
CDH3-209ENST00000569080 NRXN2Q9P2S2 1712 aa10.49□□□□□ -0.73
CDH3-209ENST00000569080 KDM3BQ7LBC6 1761 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 N4BP2Q86UW6 1770 aaPredicted RBP10.48□□□□□ -0.73
CDH3-209ENST00000569080 DCAF8L1A6NGE4 600 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 FCHSD2O94868 740 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 U2AF1L5P0DN76 240 aaPredicted RBP10.48□□□□□ -0.73
CDH3-209ENST00000569080 U2AF1Q01081 240 aaKnown RBP eCLIP10.48□□□□□ -0.73
CDH3-209ENST00000569080 VSIG10Q8N0Z9 540 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 CCDC87Q9NVE4 849 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 NUDCQ9Y266 331 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 ZBTB1Q9Y2K1 713 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 HEG1Q9ULI3 1381 aa10.48□□□□□ -0.73
CDH3-209ENST00000569080 LAMB4A4D0S4 1761 aa10.47□□□□□ -0.73
CDH3-209ENST00000569080 BCORQ6W2J9 1755 aa10.47□□□□□ -0.73
CDH3-209ENST00000569080 ZNF790Q6PG37 636 aa10.47□□□□□ -0.73
CDH3-209ENST00000569080 ZNF496Q96IT1 587 aaPredicted RBP10.47□□□□□ -0.73
CDH3-209ENST00000569080 SRP68Q9UHB9 627 aaKnown RBP10.47□□□□□ -0.73
CDH3-209ENST00000569080 COL15A1P39059 1388 aa10.47□□□□□ -0.73
CDH3-209ENST00000569080 AFDNP55196 1824 aaKnown RBP10.47□□□□□ -0.73
CDH3-209ENST00000569080 TEFQ10587 303 aa10.46□□□□□ -0.73
CDH3-209ENST00000569080 GPR162Q16538 588 aa10.46□□□□□ -0.73
CDH3-209ENST00000569080 NLGN1Q8N2Q7 840 aa10.46□□□□□ -0.73
CDH3-209ENST00000569080 PLEKHF1Q96S99 279 aa10.46□□□□□ -0.73
CDH3-209ENST00000569080 KCNQ3O43525 872 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms