RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	MAP2	P11137	1827 aa	Known RBP	11.43	□□□□□ -0.58
TSC2-223	ENST00000568566	GNPAT	O15228	680 aa		11.42	□□□□□ -0.58
TSC2-223	ENST00000568566	PXDNL	A1KZ92	1463 aa		11.41	□□□□□ -0.58
TSC2-223	ENST00000568566	LOC102724428	A0A0B4J2F2	783 aa		11.41	□□□□□ -0.58
TSC2-223	ENST00000568566	SSFA2	P28290	1259 aa		11.41	□□□□□ -0.58
TSC2-223	ENST00000568566	SIK1	P57059	783 aa		11.41	□□□□□ -0.58
TSC2-223	ENST00000568566	POLK	Q9UBT6	870 aa		11.41	□□□□□ -0.58
TSC2-223	ENST00000568566	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.41	□□□□□ -0.58
TSC2-223	ENST00000568566	KIAA1551	Q9HCM1	1747 aa		11.4	□□□□□ -0.58
TSC2-223	ENST00000568566	MMP10	P09238	476 aa		11.4	□□□□□ -0.58
TSC2-223	ENST00000568566	MORC1	Q86VD1	984 aa		11.4	□□□□□ -0.58
TSC2-223	ENST00000568566	KIF24	Q5T7B8	1368 aa		11.4	□□□□□ -0.59
TSC2-223	ENST00000568566	KIF13B	Q9NQT8	1826 aa		11.39	□□□□□ -0.59
TSC2-223	ENST00000568566	PPM1G	O15355	546 aa	Predicted RBP	11.39	□□□□□ -0.59
TSC2-223	ENST00000568566	APLP1	P51693	650 aa		11.39	□□□□□ -0.59
TSC2-223	ENST00000568566	ITPK1	Q13572	414 aa		11.39	□□□□□ -0.59
TSC2-223	ENST00000568566	NCAPD2	Q15021	1401 aa		11.39	□□□□□ -0.59
TSC2-223	ENST00000568566	TMOD3	Q9NYL9	352 aa		11.39	□□□□□ -0.59
TSC2-223	ENST00000568566	ASAP1	Q9ULH1	1129 aa		11.39	□□□□□ -0.59
TSC2-223	ENST00000568566	ATP6V1A	P38606	617 aa		11.38	□□□□□ -0.59
TSC2-223	ENST00000568566	NKX1-1	Q15270	411 aa	Predicted RBP	11.38	□□□□□ -0.59
TSC2-223	ENST00000568566	SPG7	Q9UQ90	795 aa		11.38	□□□□□ -0.59
TSC2-223	ENST00000568566	BCS1L	Q9Y276	419 aa		11.38	□□□□□ -0.59
TSC2-223	ENST00000568566	ANKRD26	Q9UPS8	1709 aa		11.38	□□□□□ -0.59
TSC2-223	ENST00000568566	C10orf71	Q711Q0	1435 aa		11.37	□□□□□ -0.59
TSC2-223	ENST00000568566	NMRK2	Q9NPI5	230 aa		11.37	□□□□□ -0.59
TSC2-223	ENST00000568566		A0A0G2JLW4	131 aa		11.36	□□□□□ -0.59
TSC2-223	ENST00000568566	KDR	P35968	1356 aa		11.36	□□□□□ -0.59
TSC2-223	ENST00000568566	C4A	P0C0L4	1744 aa		11.35	□□□□□ -0.59
TSC2-223	ENST00000568566	WDR90	Q96KV7	1748 aa		11.35	□□□□□ -0.59
TSC2-223	ENST00000568566	TOMM70	O94826	608 aa		11.35	□□□□□ -0.59
TSC2-223	ENST00000568566	MTHFS	P49914	203 aa		11.35	□□□□□ -0.59
TSC2-223	ENST00000568566	ARHGAP27	Q6ZUM4	889 aa		11.35	□□□□□ -0.59
TSC2-223	ENST00000568566	EYA1	Q99502	592 aa		11.35	□□□□□ -0.59
TSC2-223	ENST00000568566	BRCA1	P38398	1863 aa	Known RBP	11.34	□□□□□ -0.59
TSC2-223	ENST00000568566	PHKG2	P15735	406 aa		11.34	□□□□□ -0.59
TSC2-223	ENST00000568566	DPEP1	P16444	411 aa		11.34	□□□□□ -0.59
TSC2-223	ENST00000568566	PPP2R1A	P30153	589 aa		11.34	□□□□□ -0.59
TSC2-223	ENST00000568566	DNAJC5G	Q8N7S2	189 aa		11.34	□□□□□ -0.59
TSC2-223	ENST00000568566	ATG3	Q9NT62	314 aa		11.34	□□□□□ -0.59
TSC2-223	ENST00000568566	RTCB	Q9Y3I0	505 aa	Known RBP	11.34	□□□□□ -0.59
TSC2-223	ENST00000568566	COL5A3	P25940	1745 aa	Predicted RBP	11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	FCHSD2	O94868	740 aa		11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	TGFB2	P61812	414 aa		11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	HTRA3	P83110	453 aa		11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	EIF4A2	Q14240	407 aa	Known RBP	11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	CCDC184	Q52MB2	194 aa		11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	TRAPPC3L	Q5T215	181 aa		11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	IFNL2	Q8IZJ0	200 aa		11.33	□□□□□ -0.6
TSC2-223	ENST00000568566	NPC1L1	Q9UHC9	1359 aa		11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	C9orf131	Q5VYM1	1079 aa		11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	NLGN1	Q8N2Q7	840 aa		11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	ARHGEF1	Q92888	912 aa	Known RBP	11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	SLC4A9	Q96Q91	983 aa		11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	RBM42	Q9BTD8	480 aa	Known RBP	11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	CCDC87	Q9NVE4	849 aa		11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	PCNT	O95613	3336 aa		11.32	□□□□□ -0.6
TSC2-223	ENST00000568566	KCP	Q6ZWJ8	1503 aa		11.31	□□□□□ -0.6
TSC2-223	ENST00000568566	ARFGEF1	Q9Y6D6	1849 aa		11.31	□□□□□ -0.6
TSC2-223	ENST00000568566	GYS1	P13807	737 aa		11.31	□□□□□ -0.6
TSC2-223	ENST00000568566	AEBP1	Q8IUX7	1158 aa		11.31	□□□□□ -0.6
TSC2-223	ENST00000568566	PARP3	Q9Y6F1	533 aa		11.31	□□□□□ -0.6
TSC2-223	ENST00000568566	CNTNAP4	Q9C0A0	1308 aa		11.31	□□□□□ -0.6
TSC2-223	ENST00000568566	MYH14	Q7Z406	1995 aa	Known RBP	11.3	□□□□□ -0.6
TSC2-223	ENST00000568566	ZNF831	Q5JPB2	1677 aa		11.3	□□□□□ -0.6
TSC2-223	ENST00000568566	PLEKHG2	Q9H7P9	1386 aa		11.3	□□□□□ -0.6
TSC2-223	ENST00000568566	ADRA2B	P18089	450 aa		11.3	□□□□□ -0.6
TSC2-223	ENST00000568566	RFC4	P35249	363 aa		11.3	□□□□□ -0.6
TSC2-223	ENST00000568566	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.3	□□□□□ -0.6
TSC2-223	ENST00000568566	RBM46	Q8TBY0	533 aa	Known RBP	11.3	□□□□□ -0.6
TSC2-223	ENST00000568566	IL13	P35225	146 aa		11.29	□□□□□ -0.6
TSC2-223	ENST00000568566	KLRG1	Q96E93	195 aa		11.29	□□□□□ -0.6
TSC2-223	ENST00000568566	KDM6A	O15550	1401 aa	Predicted RBP	11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	RPS6KA4	O75676	772 aa		11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	CAPN15	O75808	1086 aa		11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	KCNA3	P22001	575 aa		11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	RC3H1	Q5TC82	1133 aa	Known RBP	11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	RNF181	Q9P0P0	153 aa		11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	SRP68	Q9UHB9	627 aa	Known RBP	11.28	□□□□□ -0.6
TSC2-223	ENST00000568566	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.27	□□□□□ -0.6
TSC2-223	ENST00000568566	COL3A1	P02461	1466 aa	Predicted RBP	11.27	□□□□□ -0.6
TSC2-223	ENST00000568566	ERVV-2	B6SEH9	535 aa		11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	DDR1	Q08345	913 aa		11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	DALRD3	Q5D0E6	543 aa	Known RBP	11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	DCAF5	Q96JK2	942 aa		11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	PIM2	Q9P1W9	311 aa		11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	KDM2B	Q8NHM5	1336 aa		11.27	□□□□□ -0.61
TSC2-223	ENST00000568566	PTCD1	O75127	700 aa	Known RBP	11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	CHRNA5	P30532	468 aa		11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	CRKL	P46109	303 aa	Known RBP	11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	CABP4	P57796	275 aa		11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	FSTL1	Q12841	308 aa		11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	FKBP8	Q14318	412 aa		11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	RRAGC	Q9HB90	399 aa		11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	TJP1	Q07157	1748 aa		11.26	□□□□□ -0.61
TSC2-223	ENST00000568566	SBF1	O95248	1867 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms