RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 AMER1Q5JTC6 1135 aaPredicted RBP18.98■□□□□ 0.63
CLN3-235ENST00000568497 SMARCC1Q92922 1105 aaPredicted RBP18.98■□□□□ 0.63
CLN3-235ENST00000568497 KNSTRNQ9Y448 316 aa18.98■□□□□ 0.63
CLN3-235ENST00000568497 PLEKHG2Q9H7P9 1386 aa18.97■□□□□ 0.63
CLN3-235ENST00000568497 A0A0G2JLW4 131 aa18.97■□□□□ 0.63
CLN3-235ENST00000568497 PER1O15534 1290 aaPredicted RBP18.97■□□□□ 0.63
CLN3-235ENST00000568497 FCHSD2O94868 740 aa18.97■□□□□ 0.63
CLN3-235ENST00000568497 MMP10P09238 476 aa18.97■□□□□ 0.63
CLN3-235ENST00000568497 C9orf131Q5VYM1 1079 aa18.97■□□□□ 0.63
CLN3-235ENST00000568497 PCDH11XQ9BZA7 1347 aa18.97■□□□□ 0.63
CLN3-235ENST00000568497 PCDH11YQ9BZA8 1340 aa18.97■□□□□ 0.63
CLN3-235ENST00000568497 KCPQ6ZWJ8 1503 aa18.96■□□□□ 0.63
CLN3-235ENST00000568497 HSPA1AP0DMV8 641 aaKnown RBP18.96■□□□□ 0.63
CLN3-235ENST00000568497 HSPA1BP0DMV9 641 aaKnown RBP18.96■□□□□ 0.63
CLN3-235ENST00000568497 TATP17735 454 aaPredicted RBP18.96■□□□□ 0.63
CLN3-235ENST00000568497 MORC1Q86VD1 984 aa18.96■□□□□ 0.63
CLN3-235ENST00000568497 KDM2BQ8NHM5 1336 aa18.96■□□□□ 0.63
CLN3-235ENST00000568497 PCNTO95613 3336 aa18.95■□□□□ 0.62
CLN3-235ENST00000568497 GNPATO15228 680 aa18.95■□□□□ 0.62
CLN3-235ENST00000568497 TGFB2P61812 414 aa18.95■□□□□ 0.62
CLN3-235ENST00000568497 NBPF6Q5VWK0 638 aa18.95■□□□□ 0.62
CLN3-235ENST00000568497 NBPF4Q96M43 638 aa18.95■□□□□ 0.62
CLN3-235ENST00000568497 MAP2P11137 1827 aaKnown RBP18.95■□□□□ 0.62
CLN3-235ENST00000568497 KIAA1551Q9HCM1 1747 aa18.94■□□□□ 0.62
CLN3-235ENST00000568497 POLKQ9UBT6 870 aa18.94■□□□□ 0.62
CLN3-235ENST00000568497 KIF13BQ9NQT8 1826 aa18.94■□□□□ 0.62
CLN3-235ENST00000568497 ANKRD26Q9UPS8 1709 aa18.94■□□□□ 0.62
CLN3-235ENST00000568497 RTL1A6NKG5 1358 aa18.93■□□□□ 0.62
CLN3-235ENST00000568497 ITGB4P16144 1822 aa18.93■□□□□ 0.62
CLN3-235ENST00000568497 SMG6Q86US8 1419 aaKnown RBP18.93■□□□□ 0.62
CLN3-235ENST00000568497 LINC00116Q8NCU8 138 aa18.93■□□□□ 0.62
CLN3-235ENST00000568497 RRAGCQ9HB90 399 aa18.93■□□□□ 0.62
CLN3-235ENST00000568497 PKD1L3Q7Z443 1732 aa18.93■□□□□ 0.62
CLN3-235ENST00000568497 SMC1BQ8NDV3 1235 aa18.92■□□□□ 0.62
CLN3-235ENST00000568497 DPEP1P16444 411 aa18.91■□□□□ 0.62
CLN3-235ENST00000568497 DDX10Q13206 875 aaKnown RBP18.91■□□□□ 0.62
CLN3-235ENST00000568497 TNRC6CQ9HCJ0 1690 aaKnown RBP18.9■□□□□ 0.62
CLN3-235ENST00000568497 LOC102724428A0A0B4J2F2 783 aa18.9■□□□□ 0.62
CLN3-235ENST00000568497 SIK1P57059 783 aa18.9■□□□□ 0.62
CLN3-235ENST00000568497 CCDC87Q9NVE4 849 aa18.9■□□□□ 0.62
CLN3-235ENST00000568497 RNF181Q9P0P0 153 aa18.9■□□□□ 0.62
CLN3-235ENST00000568497 C10orf71Q711Q0 1435 aa18.9■□□□□ 0.62
CLN3-235ENST00000568497 ZEB1P37275 1124 aaPredicted RBP18.89■□□□□ 0.61
CLN3-235ENST00000568497 CYP27B1O15528 508 aa18.88■□□□□ 0.61
CLN3-235ENST00000568497 SLC34A2O95436 690 aa18.88■□□□□ 0.61
CLN3-235ENST00000568497 PIGBQ92521 554 aa18.88■□□□□ 0.61
CLN3-235ENST00000568497 FLT4P35916 1363 aa18.87■□□□□ 0.61
CLN3-235ENST00000568497 BRCA1P38398 1863 aaKnown RBP18.87■□□□□ 0.61
CLN3-235ENST00000568497 ATP6V1AP38606 617 aa18.87■□□□□ 0.61
CLN3-235ENST00000568497 ARFGEF1Q9Y6D6 1849 aa18.86■□□□□ 0.61
CLN3-235ENST00000568497 INSRP06213 1382 aa18.85■□□□□ 0.61
CLN3-235ENST00000568497 ITPK1Q13572 414 aa18.85■□□□□ 0.61
CLN3-235ENST00000568497 EIF4A2Q14240 407 aaKnown RBP18.85■□□□□ 0.61
CLN3-235ENST00000568497 NLGN1Q8N2Q7 840 aa18.85■□□□□ 0.61
CLN3-235ENST00000568497 PARP3Q9Y6F1 533 aa18.85■□□□□ 0.61
CLN3-235ENST00000568497 C4AP0C0L4 1744 aa18.84■□□□□ 0.61
CLN3-235ENST00000568497 NKX1-1Q15270 411 aaPredicted RBP18.84■□□□□ 0.61
CLN3-235ENST00000568497 TRAPPC3LQ5T215 181 aa18.84■□□□□ 0.61
CLN3-235ENST00000568497 PIM2Q9P1W9 311 aa18.84■□□□□ 0.61
CLN3-235ENST00000568497 MTHFSP49914 203 aa18.83■□□□□ 0.6
CLN3-235ENST00000568497 TMOD3Q9NYL9 352 aa18.83■□□□□ 0.6
CLN3-235ENST00000568497 RTCBQ9Y3I0 505 aaKnown RBP18.83■□□□□ 0.6
CLN3-235ENST00000568497 DALRD3Q5D0E6 543 aaKnown RBP18.82■□□□□ 0.6
CLN3-235ENST00000568497 EYA1Q99502 592 aa18.82■□□□□ 0.6
CLN3-235ENST00000568497 DCAF5Q96JK2 942 aa18.81■□□□□ 0.6
CLN3-235ENST00000568497 ASAP1Q9ULH1 1129 aa18.81■□□□□ 0.6
CLN3-235ENST00000568497 AEBP1Q8IUX7 1158 aa18.8■□□□□ 0.6
CLN3-235ENST00000568497 KCNA3P22001 575 aa18.79■□□□□ 0.6
CLN3-235ENST00000568497 KIF24Q5T7B8 1368 aa18.79■□□□□ 0.6
CLN3-235ENST00000568497 RFC4P35249 363 aa18.78■□□□□ 0.6
CLN3-235ENST00000568497 SBF1O95248 1867 aa18.77■□□□□ 0.6
CLN3-235ENST00000568497 GYS1P13807 737 aa18.77■□□□□ 0.6
CLN3-235ENST00000568497 ARHGEF1Q92888 912 aaKnown RBP18.77■□□□□ 0.6
CLN3-235ENST00000568497 SPG7Q9UQ90 795 aa18.77■□□□□ 0.6
CLN3-235ENST00000568497 VEGFAP15692 232 aaPredicted RBP18.76■□□□□ 0.59
CLN3-235ENST00000568497 ADRA2BP18089 450 aa18.76■□□□□ 0.59
CLN3-235ENST00000568497 NCAPD2Q15021 1401 aa18.75■□□□□ 0.59
CLN3-235ENST00000568497 RASSF7Q02833 373 aa18.75■□□□□ 0.59
CLN3-235ENST00000568497 RBM42Q9BTD8 480 aaKnown RBP18.75■□□□□ 0.59
CLN3-235ENST00000568497 HMOX1P09601 288 aa18.74■□□□□ 0.59
CLN3-235ENST00000568497 PPP2R1AP30153 589 aa18.74■□□□□ 0.59
CLN3-235ENST00000568497 CHRNA5P30532 468 aa18.74■□□□□ 0.59
CLN3-235ENST00000568497 IL13P35225 146 aa18.74■□□□□ 0.59
CLN3-235ENST00000568497 MKRN1Q9UHC7 482 aaKnown RBP18.74■□□□□ 0.59
CLN3-235ENST00000568497 RC3H1Q5TC82 1133 aaKnown RBP18.73■□□□□ 0.59
CLN3-235ENST00000568497 ATG3Q9NT62 314 aa18.73■□□□□ 0.59
CLN3-235ENST00000568497 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLN3-235ENST00000568497 ZC3H4Q9UPT8 1303 aaKnown RBP18.73■□□□□ 0.59
CLN3-235ENST00000568497 KDRP35968 1356 aa18.72■□□□□ 0.59
CLN3-235ENST00000568497 NPC1L1Q9UHC9 1359 aa18.72■□□□□ 0.59
CLN3-235ENST00000568497 ZNF316A6NFI3 1004 aaPredicted RBP18.71■□□□□ 0.59
CLN3-235ENST00000568497 GLTPD2A6NH11 291 aa18.71■□□□□ 0.59
CLN3-235ENST00000568497 SULT6B1Q6IMI4 303 aa18.71■□□□□ 0.59
CLN3-235ENST00000568497 ZNF831Q5JPB2 1677 aa18.7■□□□□ 0.58
CLN3-235ENST00000568497 FOXN1O15353 648 aa18.7■□□□□ 0.58
CLN3-235ENST00000568497 RPS6KA4O75676 772 aa18.7■□□□□ 0.58
CLN3-235ENST00000568497 COL3A1P02461 1466 aaPredicted RBP18.7■□□□□ 0.58
CLN3-235ENST00000568497 CNTNAP4Q9C0A0 1308 aa18.7■□□□□ 0.58
CLN3-235ENST00000568497 TIAM2Q8IVF5 1701 aa18.69■□□□□ 0.58
CLN3-235ENST00000568497 PHKG2P15735 406 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms