RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 CYP27B1O15528 508 aa24.28■■□□□ 1.48
CLN3-233ENST00000568452 ADAMTS2O95450 1211 aa24.28■■□□□ 1.48
CLN3-233ENST00000568452 TRIM27P14373 513 aa24.28■■□□□ 1.48
CLN3-233ENST00000568452 CHMP4AQ9BY43 222 aa24.28■■□□□ 1.48
CLN3-233ENST00000568452 KDM3BQ7LBC6 1761 aa24.27■■□□□ 1.48
CLN3-233ENST00000568452 COG6Q9Y2V7 657 aa24.27■■□□□ 1.48
CLN3-233ENST00000568452 SCN11AQ9UI33 1791 aa24.26■■□□□ 1.47
CLN3-233ENST00000568452 KDM6AO15550 1401 aaPredicted RBP24.25■■□□□ 1.47
CLN3-233ENST00000568452 PLCH1Q4KWH8 1693 aa24.25■■□□□ 1.47
CLN3-233ENST00000568452 RLBP1P12271 317 aa24.25■■□□□ 1.47
CLN3-233ENST00000568452 CLUAP1Q96AJ1 413 aa24.25■■□□□ 1.47
CLN3-233ENST00000568452 SLC52A2Q9HAB3 445 aa24.24■■□□□ 1.47
CLN3-233ENST00000568452 TNNQ9UQP3 1299 aa24.24■■□□□ 1.47
CLN3-233ENST00000568452 SIPA1L3O60292 1781 aaPredicted RBP24.24■■□□□ 1.47
CLN3-233ENST00000568452 HOXB7P09629 217 aa24.24■■□□□ 1.47
CLN3-233ENST00000568452 EIF4A1P60842 406 aaKnown RBP24.24■■□□□ 1.47
CLN3-233ENST00000568452 MVPQ14764 893 aaKnown RBP24.24■■□□□ 1.47
CLN3-233ENST00000568452 API5Q9BZZ5 524 aaKnown RBP24.24■■□□□ 1.47
CLN3-233ENST00000568452 CCDC30Q5VVM6 783 aa24.23■■□□□ 1.47
CLN3-233ENST00000568452 MRC1P22897 1456 aa24.23■■□□□ 1.47
CLN3-233ENST00000568452 TCERG1O14776 1098 aaKnown RBP24.22■■□□□ 1.47
CLN3-233ENST00000568452 STK31Q9BXU1 1019 aa24.21■■□□□ 1.47
CLN3-233ENST00000568452 USP35Q9P2H5 1018 aa24.21■■□□□ 1.47
CLN3-233ENST00000568452 NWD2Q9ULI1 1742 aa24.21■■□□□ 1.47
CLN3-233ENST00000568452 MEX3CQ5U5Q3 659 aaKnown RBP24.21■■□□□ 1.47
CLN3-233ENST00000568452 NRAPQ86VF7 1730 aa24.2■■□□□ 1.46
CLN3-233ENST00000568452 LRP6O75581 1613 aa24.2■■□□□ 1.46
CLN3-233ENST00000568452 DISP2A7MBM2 1401 aa24.2■■□□□ 1.46
CLN3-233ENST00000568452 PTPRCP08575 1304 aa24.2■■□□□ 1.46
CLN3-233ENST00000568452 NKX1-1Q15270 411 aaPredicted RBP24.2■■□□□ 1.46
CLN3-233ENST00000568452 DDX19BQ9UMR2 479 aa24.2■■□□□ 1.46
CLN3-233ENST00000568452 SLIT2O94813 1529 aa24.19■■□□□ 1.46
CLN3-233ENST00000568452 CDCA7Q9BWT1 371 aaPredicted RBP24.18■■□□□ 1.46
CLN3-233ENST00000568452 THRAP3Q9Y2W1 955 aaKnown RBP24.18■■□□□ 1.46
CLN3-233ENST00000568452 SLC4A2P04920 1241 aa24.17■■□□□ 1.46
CLN3-233ENST00000568452 CABP4P57796 275 aa24.17■■□□□ 1.46
CLN3-233ENST00000568452 CHMP4BQ9H444 224 aaKnown RBP24.17■■□□□ 1.46
CLN3-233ENST00000568452 ERVV-2B6SEH9 535 aa24.17■■□□□ 1.46
CLN3-233ENST00000568452 ITPRIPQ8IWB1 547 aa24.17■■□□□ 1.46
CLN3-233ENST00000568452 TMEM57Q8N5G2 664 aa24.17■■□□□ 1.46
CLN3-233ENST00000568452 NFATC2IPQ8NCF5 419 aa24.17■■□□□ 1.46
CLN3-233ENST00000568452 ABCC4O15439 1325 aa24.16■■□□□ 1.46
CLN3-233ENST00000568452 SHANK3Q9BYB0 1731 aa24.16■■□□□ 1.46
CLN3-233ENST00000568452 KCNQ3O43525 872 aa24.16■■□□□ 1.46
CLN3-233ENST00000568452 HDGFL1Q5TGJ6 251 aa24.16■■□□□ 1.46
CLN3-233ENST00000568452 ILDR1Q86SU0 546 aaPredicted RBP24.16■■□□□ 1.46
CLN3-233ENST00000568452 ZNF790Q6PG37 636 aa24.15■■□□□ 1.46
CLN3-233ENST00000568452 DDX54Q8TDD1 881 aaKnown RBP24.15■■□□□ 1.46
CLN3-233ENST00000568452 HEG1Q9ULI3 1381 aa24.15■■□□□ 1.46
CLN3-233ENST00000568452 SPATA31A1Q5TZJ5 1347 aa24.15■■□□□ 1.46
CLN3-233ENST00000568452 C8orf37Q96NL8 207 aa24.14■■□□□ 1.46
CLN3-233ENST00000568452 CACNA1FO60840 1977 aa24.13■■□□□ 1.45
CLN3-233ENST00000568452 WNK3Q9BYP7 1800 aa24.12■■□□□ 1.45
CLN3-233ENST00000568452 CENPQQ7L2Z9 268 aaPredicted RBP24.12■■□□□ 1.45
CLN3-233ENST00000568452 TTC5Q8N0Z6 440 aa24.12■■□□□ 1.45
CLN3-233ENST00000568452 NGLY1Q96IV0 654 aa24.12■■□□□ 1.45
CLN3-233ENST00000568452 SPATA31A5Q5VU36 1347 aa24.11■■□□□ 1.45
CLN3-233ENST00000568452 SPATA31A7Q8IWB4 1347 aa24.11■■□□□ 1.45
CLN3-233ENST00000568452 EXOC5O00471 708 aa24.11■■□□□ 1.45
CLN3-233ENST00000568452 GIGYF1O75420 1035 aaPredicted RBP24.11■■□□□ 1.45
CLN3-233ENST00000568452 UNC5CLQ8IV45 518 aa24.1■■□□□ 1.45
CLN3-233ENST00000568452 EIF2S2P20042 333 aaKnown RBP24.09■■□□□ 1.45
CLN3-233ENST00000568452 NECTIN2Q92692 538 aa24.09■■□□□ 1.45
CLN3-233ENST00000568452 TNS2Q63HR2 1409 aa24.09■■□□□ 1.45
CLN3-233ENST00000568452 KDM2BQ8NHM5 1336 aa24.08■■□□□ 1.45
CLN3-233ENST00000568452 SLC39A6Q13433 755 aa24.08■■□□□ 1.45
CLN3-233ENST00000568452 INTS3Q68E01 1043 aaKnown RBP24.08■■□□□ 1.45
CLN3-233ENST00000568452 RGS12O14924 1447 aa24.08■■□□□ 1.45
CLN3-233ENST00000568452 FLIIQ13045 1269 aa24.07■■□□□ 1.44
CLN3-233ENST00000568452 BARGINQ6ZT62 677 aa24.07■■□□□ 1.44
CLN3-233ENST00000568452 G2E3Q7L622 706 aa24.07■■□□□ 1.44
CLN3-233ENST00000568452 FNBP4Q8N3X1 1017 aaPredicted RBP24.07■■□□□ 1.44
CLN3-233ENST00000568452 FMNL2Q96PY5 1086 aa24.07■■□□□ 1.44
CLN3-233ENST00000568452 CCDC9Q9Y3X0 531 aaKnown RBP24.07■■□□□ 1.44
CLN3-233ENST00000568452 ZBTB40Q9NUA8 1239 aa24.06■■□□□ 1.44
CLN3-233ENST00000568452 DBF4Q9UBU7 674 aaPredicted RBP24.06■■□□□ 1.44
CLN3-233ENST00000568452 VPS72Q15906 364 aa24.05■■□□□ 1.44
CLN3-233ENST00000568452 ZBTB7BO15156 539 aaPredicted RBP24.04■■□□□ 1.44
CLN3-233ENST00000568452 SNRPA1P09661 255 aaKnown RBP24.04■■□□□ 1.44
CLN3-233ENST00000568452 FKBP5Q13451 457 aaPredicted RBP24.04■■□□□ 1.44
CLN3-233ENST00000568452 ZNF496Q96IT1 587 aaPredicted RBP24.04■■□□□ 1.44
CLN3-233ENST00000568452 DDB1Q16531 1140 aa24.03■■□□□ 1.44
CLN3-233ENST00000568452 TMOD3Q9NYL9 352 aa24.03■■□□□ 1.44
CLN3-233ENST00000568452 CHPF2Q9P2E5 772 aa24.03■■□□□ 1.44
CLN3-233ENST00000568452 PCDHB15Q9Y5E8 787 aa24.03■■□□□ 1.44
CLN3-233ENST00000568452 BCL9LQ86UU0 1499 aa24.03■■□□□ 1.44
CLN3-233ENST00000568452 CCT4P50991 539 aaKnown RBP24.02■■□□□ 1.44
CLN3-233ENST00000568452 RWDD1Q9H446 243 aaPredicted RBP24.02■■□□□ 1.44
CLN3-233ENST00000568452 USP21Q9UK80 565 aa24.02■■□□□ 1.44
CLN3-233ENST00000568452 AFF2P51816 1311 aa24.02■■□□□ 1.44
CLN3-233ENST00000568452 TOGARAM1Q9Y4F4 1720 aa24.01■■□□□ 1.43
CLN3-233ENST00000568452 TNKS1BP1Q9C0C2 1729 aaKnown RBP24■■□□□ 1.43
CLN3-233ENST00000568452 PAPPAQ13219 1627 aa24■■□□□ 1.43
CLN3-233ENST00000568452 HYPKQ9NX55 129 aa24■■□□□ 1.43
CLN3-233ENST00000568452 PXDNLA1KZ92 1463 aa24■■□□□ 1.43
CLN3-233ENST00000568452 IGHDP01880 384 aa23.99■■□□□ 1.43
CLN3-233ENST00000568452 DDX21Q9NR30 783 aaKnown RBP eCLIP23.99■■□□□ 1.43
CLN3-233ENST00000568452 PRAMEF22A3QJZ6 481 aa23.98■■□□□ 1.43
CLN3-233ENST00000568452 PHAXQ9H814 394 aaKnown RBP23.98■■□□□ 1.43
CLN3-233ENST00000568452 C5P01031 1676 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms