RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CNTNAP3Q9BZ76 1288 aa9.22□□□□□ -0.93
VPS35-204ENST00000563884 PCDHB9Q9Y5E1 797 aa9.22□□□□□ -0.93
VPS35-204ENST00000563884 FER1L4A9Z1Z3 1794 aa9.22□□□□□ -0.93
VPS35-204ENST00000563884 UACAQ9BZF9 1416 aa9.22□□□□□ -0.93
VPS35-204ENST00000563884 SLC35F4A4IF30 521 aa9.21□□□□□ -0.94
VPS35-204ENST00000563884 ZBBXA8MT70 800 aa9.21□□□□□ -0.94
VPS35-204ENST00000563884 ESPNB1AK53 854 aa9.21□□□□□ -0.94
VPS35-204ENST00000563884 ADD1P35611 737 aaKnown RBP9.21□□□□□ -0.94
VPS35-204ENST00000563884 CDC14CA4D256 554 aa9.2□□□□□ -0.94
VPS35-204ENST00000563884 LILRA1O75019 489 aa9.2□□□□□ -0.94
VPS35-204ENST00000563884 SEPT12Q8IYM1 358 aa9.2□□□□□ -0.94
VPS35-204ENST00000563884 RNF217Q8TC41 542 aa9.2□□□□□ -0.94
VPS35-204ENST00000563884 TRIM52Q96A61 297 aa9.2□□□□□ -0.94
VPS35-204ENST00000563884 CYLDQ9NQC7 956 aa9.2□□□□□ -0.94
VPS35-204ENST00000563884 CD109Q6YHK3 1445 aa9.2□□□□□ -0.94
VPS35-204ENST00000563884 PTGIRP43119 386 aa9.19□□□□□ -0.94
VPS35-204ENST00000563884 NANOS1Q8WY41 292 aaKnown RBP9.19□□□□□ -0.94
VPS35-204ENST00000563884 COL25A1Q9BXS0 654 aaPredicted RBP9.19□□□□□ -0.94
VPS35-204ENST00000563884 STRCQ7RTU9 1775 aa9.19□□□□□ -0.94
VPS35-204ENST00000563884 FBXO45P0C2W1 286 aa9.18□□□□□ -0.94
VPS35-204ENST00000563884 ITGA6P23229 1130 aa9.18□□□□□ -0.94
VPS35-204ENST00000563884 HSPA2P54652 639 aa9.18□□□□□ -0.94
VPS35-204ENST00000563884 KRT76Q01546 638 aa9.18□□□□□ -0.94
VPS35-204ENST00000563884 MED1Q15648 1581 aaPredicted RBP9.18□□□□□ -0.94
VPS35-204ENST00000563884 VWA5B2Q8N398 1253 aa9.18□□□□□ -0.94
VPS35-204ENST00000563884 GJD4Q96KN9 370 aaPredicted RBP9.18□□□□□ -0.94
VPS35-204ENST00000563884 ARHGEF40Q8TER5 1519 aa9.17□□□□□ -0.94
VPS35-204ENST00000563884 GIGYF1O75420 1035 aaPredicted RBP9.17□□□□□ -0.94
VPS35-204ENST00000563884 SV2AQ7L0J3 742 aa9.17□□□□□ -0.94
VPS35-204ENST00000563884 IQGAP2Q13576 1575 aa9.16□□□□□ -0.94
VPS35-204ENST00000563884 TTC37Q6PGP7 1564 aa9.16□□□□□ -0.94
VPS35-204ENST00000563884 POGZQ7Z3K3 1410 aa9.16□□□□□ -0.94
VPS35-204ENST00000563884 PHLDB1Q86UU1 1377 aa9.16□□□□□ -0.94
VPS35-204ENST00000563884 FOXD4L5Q5VV16 416 aaPredicted RBP9.16□□□□□ -0.94
VPS35-204ENST00000563884 KDF1Q8NAX2 398 aaPredicted RBP9.16□□□□□ -0.94
VPS35-204ENST00000563884 YEATS2Q9ULM3 1422 aa9.15□□□□□ -0.94
VPS35-204ENST00000563884 ARID4BQ4LE39 1312 aaPredicted RBP9.15□□□□□ -0.94
VPS35-204ENST00000563884 LYSMD3Q7Z3D4 306 aa9.15□□□□□ -0.94
VPS35-204ENST00000563884 TTBK1Q5TCY1 1321 aaPredicted RBP9.14□□□□□ -0.95
VPS35-204ENST00000563884 SETD1BQ9UPS6 1966 aaKnown RBP9.14□□□□□ -0.95
VPS35-204ENST00000563884 RNFT1Q5M7Z0 435 aa9.14□□□□□ -0.95
VPS35-204ENST00000563884 PRICKLE2Q7Z3G6 844 aa9.14□□□□□ -0.95
VPS35-204ENST00000563884 FANCAO15360 1455 aa9.14□□□□□ -0.95
VPS35-204ENST00000563884 SENP3-EIF4A1A0A087X0R7 540 aa9.13□□□□□ -0.95
VPS35-204ENST00000563884 ATP5J2-PTCD1G3V325 749 aa9.13□□□□□ -0.95
VPS35-204ENST00000563884 MEN1O00255 615 aa9.12□□□□□ -0.95
VPS35-204ENST00000563884 NR1H3Q13133 447 aa9.12□□□□□ -0.95
VPS35-204ENST00000563884 RNF20Q5VTR2 975 aa9.12□□□□□ -0.95
VPS35-204ENST00000563884 ZNF330Q9Y3S2 320 aaPredicted RBP9.12□□□□□ -0.95
VPS35-204ENST00000563884 RHOQP17081 205 aa9.11□□□□□ -0.95
VPS35-204ENST00000563884 CCDC125Q86Z20 511 aa9.11□□□□□ -0.95
VPS35-204ENST00000563884 SVOPQ8N4V2 548 aa9.11□□□□□ -0.95
VPS35-204ENST00000563884 BANK1Q8NDB2 785 aa9.11□□□□□ -0.95
VPS35-204ENST00000563884 PTPRTO14522 1441 aa9.11□□□□□ -0.95
VPS35-204ENST00000563884 LTBP4Q8N2S1 1624 aa9.1□□□□□ -0.95
VPS35-204ENST00000563884 RNF144AP50876 292 aaPredicted RBP9.1□□□□□ -0.95
VPS35-204ENST00000563884 MCCD1P59942 119 aaPredicted RBP9.1□□□□□ -0.95
VPS35-204ENST00000563884 CC2D2BQ6DHV5 1058 aa9.1□□□□□ -0.95
VPS35-204ENST00000563884 ZNF592Q92610 1267 aa9.1□□□□□ -0.95
VPS35-204ENST00000563884 ESF1Q9H501 851 aaKnown RBP9.1□□□□□ -0.95
VPS35-204ENST00000563884 NDUFB9Q9Y6M9 179 aa9.1□□□□□ -0.95
VPS35-204ENST00000563884 FRMPD1Q5SYB0 1578 aa9.09□□□□□ -0.95
VPS35-204ENST00000563884 ADAMTS8Q9UP79 889 aa9.09□□□□□ -0.95
VPS35-204ENST00000563884 ABCA9Q8IUA7 1624 aa9.09□□□□□ -0.95
VPS35-204ENST00000563884 A0A1W2PRU2 124 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 APBB1O00213 710 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 ERVK-9P63128 1117 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 ZNF385CQ66K41 422 aaPredicted RBP9.08□□□□□ -0.96
VPS35-204ENST00000563884 MTMR14Q8NCE2 650 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 NLRP3Q96P20 1036 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 PCDHB11Q9Y5F2 797 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 KIAA0556O60303 1618 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 RICTORQ6R327 1708 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 NEO1Q92859 1461 aa9.08□□□□□ -0.96
VPS35-204ENST00000563884 CFAP74Q9C0B2 1584 aa9.07□□□□□ -0.96
VPS35-204ENST00000563884 GPC1P35052 558 aa9.07□□□□□ -0.96
VPS35-204ENST00000563884 KCNMA1Q12791 1236 aa9.07□□□□□ -0.96
VPS35-204ENST00000563884 SLC27A3Q5K4L6 730 aa9.07□□□□□ -0.96
VPS35-204ENST00000563884 CYP2U1Q7Z449 544 aa9.07□□□□□ -0.96
VPS35-204ENST00000563884 SNRKQ9NRH2 765 aa9.07□□□□□ -0.96
VPS35-204ENST00000563884 CUEDC1Q9NWM3 386 aaPredicted RBP9.07□□□□□ -0.96
VPS35-204ENST00000563884 EFCAB5A4FU69 1503 aa9.06□□□□□ -0.96
VPS35-204ENST00000563884 RIPOR1Q6ZS17 1223 aa9.06□□□□□ -0.96
VPS35-204ENST00000563884 WHAMMQ8TF30 809 aa9.06□□□□□ -0.96
VPS35-204ENST00000563884 UHRF1BP1Q6BDS2 1440 aa9.05□□□□□ -0.96
VPS35-204ENST00000563884 DISP1Q96F81 1524 aa9.05□□□□□ -0.96
VPS35-204ENST00000563884 SLURP2P0DP57 97 aa9.05□□□□□ -0.96
VPS35-204ENST00000563884 SCTRP47872 440 aa9.05□□□□□ -0.96
VPS35-204ENST00000563884 AKNAQ7Z591 1439 aa9.05□□□□□ -0.96
VPS35-204ENST00000563884 RNF225M0QZC1 329 aaPredicted RBP9.04□□□□□ -0.96
VPS35-204ENST00000563884 ADAMTS2O95450 1211 aa9.04□□□□□ -0.96
VPS35-204ENST00000563884 POU4F2Q12837 409 aa9.04□□□□□ -0.96
VPS35-204ENST00000563884 FOXR1Q6PIV2 292 aa9.03□□□□□ -0.96
VPS35-204ENST00000563884 GAS2L1Q99501 681 aaPredicted RBP9.03□□□□□ -0.96
VPS35-204ENST00000563884 ARHGEF10LQ9HCE6 1279 aa9.03□□□□□ -0.96
VPS35-204ENST00000563884 UGGT2Q9NYU1 1516 aa9.03□□□□□ -0.96
VPS35-204ENST00000563884 ZMYM4Q5VZL5 1548 aa9.02□□□□□ -0.97
VPS35-204ENST00000563884 ZFYVE16Q7Z3T8 1539 aa9.02□□□□□ -0.97
VPS35-204ENST00000563884 UBAP1LF5GYI3 381 aa9.02□□□□□ -0.97
VPS35-204ENST00000563884 GPR37L1O60883 481 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms