RNA–Protein interactions for RNA: ENST00000561662.1

COMMD4-204, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 482 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-204ENST00000561662 DPEP1P16444 411 aa25.47■■□□□ 1.67
COMMD4-204ENST00000561662 SPG7Q9UQ90 795 aa25.47■■□□□ 1.67
COMMD4-204ENST00000561662 CAPN15O75808 1086 aa25.46■■□□□ 1.67
COMMD4-204ENST00000561662 FCHSD2O94868 740 aa25.46■■□□□ 1.67
COMMD4-204ENST00000561662 TGFB2P61812 414 aa25.45■■□□□ 1.66
COMMD4-204ENST00000561662 ATG3Q9NT62 314 aa25.45■■□□□ 1.66
COMMD4-204ENST00000561662 KIF20BQ96Q89 1820 aa25.44■■□□□ 1.66
COMMD4-204ENST00000561662 COL13A1Q5TAT6 717 aaPredicted RBP25.44■■□□□ 1.66
COMMD4-204ENST00000561662 TMF1P82094 1093 aa25.43■■□□□ 1.66
COMMD4-204ENST00000561662 C9orf131Q5VYM1 1079 aa25.43■■□□□ 1.66
COMMD4-204ENST00000561662 KIF13BQ9NQT8 1826 aa25.42■■□□□ 1.66
COMMD4-204ENST00000561662 TRAPPC3LQ5T215 181 aa25.42■■□□□ 1.66
COMMD4-204ENST00000561662 RTCBQ9Y3I0 505 aaKnown RBP25.42■■□□□ 1.66
COMMD4-204ENST00000561662 C10orf71Q711Q0 1435 aa25.42■■□□□ 1.66
COMMD4-204ENST00000561662 WDR90Q96KV7 1748 aa25.41■■□□□ 1.66
COMMD4-204ENST00000561662 EYA1Q99502 592 aa25.41■■□□□ 1.66
COMMD4-204ENST00000561662 RBM42Q9BTD8 480 aaKnown RBP25.41■■□□□ 1.66
COMMD4-204ENST00000561662 KIF24Q5T7B8 1368 aa25.41■■□□□ 1.66
COMMD4-204ENST00000561662 PHKG2P15735 406 aa25.4■■□□□ 1.66
COMMD4-204ENST00000561662 C16orf71Q8IYS4 520 aaPredicted RBP25.4■■□□□ 1.66
COMMD4-204ENST00000561662 ARHGEF1Q92888 912 aaKnown RBP25.4■■□□□ 1.66
COMMD4-204ENST00000561662 SLC4A9Q96Q91 983 aa25.4■■□□□ 1.66
COMMD4-204ENST00000561662 CCDC87Q9NVE4 849 aa25.4■■□□□ 1.66
COMMD4-204ENST00000561662 NLGN1Q8N2Q7 840 aa25.39■■□□□ 1.66
COMMD4-204ENST00000561662 RBM46Q8TBY0 533 aaKnown RBP25.39■■□□□ 1.66
COMMD4-204ENST00000561662 KLRG1Q96E93 195 aa25.39■■□□□ 1.66
COMMD4-204ENST00000561662 CARD14Q9BXL6 1004 aa25.39■■□□□ 1.66
COMMD4-204ENST00000561662 NCAPD2Q15021 1401 aa25.38■■□□□ 1.65
COMMD4-204ENST00000561662 PCNTO95613 3336 aa25.38■■□□□ 1.65
COMMD4-204ENST00000561662 IFNL2Q8IZJ0 200 aa25.38■■□□□ 1.65
COMMD4-204ENST00000561662 GYS1P13807 737 aa25.37■■□□□ 1.65
COMMD4-204ENST00000561662 PARP3Q9Y6F1 533 aa25.37■■□□□ 1.65
COMMD4-204ENST00000561662 KDRP35968 1356 aa25.36■■□□□ 1.65
COMMD4-204ENST00000561662 SLC24A1O60721 1099 aa25.36■■□□□ 1.65
COMMD4-204ENST00000561662 KCNA3P22001 575 aa25.36■■□□□ 1.65
COMMD4-204ENST00000561662 KCPQ6ZWJ8 1503 aa25.36■■□□□ 1.65
COMMD4-204ENST00000561662 RFC4P35249 363 aa25.35■■□□□ 1.65
COMMD4-204ENST00000561662 C4AP0C0L4 1744 aa25.34■■□□□ 1.65
COMMD4-204ENST00000561662 RRAGCQ9HB90 399 aa25.34■■□□□ 1.65
COMMD4-204ENST00000561662 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.33■■□□□ 1.65
COMMD4-204ENST00000561662 RNF181Q9P0P0 153 aa25.33■■□□□ 1.65
COMMD4-204ENST00000561662 WASHC2AQ641Q2 1341 aa25.32■■□□□ 1.64
COMMD4-204ENST00000561662 BRCA1P38398 1863 aaKnown RBP25.32■■□□□ 1.64
COMMD4-204ENST00000561662 JMYQ8N9B5 988 aa25.31■■□□□ 1.64
COMMD4-204ENST00000561662 PIM2Q9P1W9 311 aa25.31■■□□□ 1.64
COMMD4-204ENST00000561662 SRP68Q9UHB9 627 aaKnown RBP25.31■■□□□ 1.64
COMMD4-204ENST00000561662 TNS4Q8IZW8 715 aa25.3■■□□□ 1.64
COMMD4-204ENST00000561662 RPS6KA4O75676 772 aa25.29■■□□□ 1.64
COMMD4-204ENST00000561662 ADRA2BP18089 450 aa25.29■■□□□ 1.64
COMMD4-204ENST00000561662 CHRNA5P30532 468 aa25.29■■□□□ 1.64
COMMD4-204ENST00000561662 TNNT2P45379 298 aaPredicted RBP25.29■■□□□ 1.64
COMMD4-204ENST00000561662 FSTL1Q12841 308 aa25.29■■□□□ 1.64
COMMD4-204ENST00000561662 DALRD3Q5D0E6 543 aaKnown RBP25.29■■□□□ 1.64
COMMD4-204ENST00000561662 PLEKHG2Q9H7P9 1386 aa25.29■■□□□ 1.64
COMMD4-204ENST00000561662 RC3H1Q5TC82 1133 aaKnown RBP25.28■■□□□ 1.64
COMMD4-204ENST00000561662 DCAF5Q96JK2 942 aa25.28■■□□□ 1.64
COMMD4-204ENST00000561662 KDM2BQ8NHM5 1336 aa25.28■■□□□ 1.64
COMMD4-204ENST00000561662 PTCD1O75127 700 aaKnown RBP25.27■■□□□ 1.64
COMMD4-204ENST00000561662 EIF4A2Q14240 407 aaKnown RBP25.27■■□□□ 1.64
COMMD4-204ENST00000561662 POLKQ9UBT6 870 aa25.27■■□□□ 1.64
COMMD4-204ENST00000561662 CNTNAP4Q9C0A0 1308 aa25.27■■□□□ 1.64
COMMD4-204ENST00000561662 ANKRD26Q9UPS8 1709 aa25.26■■□□□ 1.63
COMMD4-204ENST00000561662 DDR1Q08345 913 aa25.26■■□□□ 1.63
COMMD4-204ENST00000561662 FKBP8Q14318 412 aa25.26■■□□□ 1.63
COMMD4-204ENST00000561662 COL5A3P25940 1745 aaPredicted RBP25.26■■□□□ 1.63
COMMD4-204ENST00000561662 ARFGEF1Q9Y6D6 1849 aa25.26■■□□□ 1.63
COMMD4-204ENST00000561662 MYH14Q7Z406 1995 aaKnown RBP25.25■■□□□ 1.63
COMMD4-204ENST00000561662 ERVV-2B6SEH9 535 aa25.24■■□□□ 1.63
COMMD4-204ENST00000561662 CABP4P57796 275 aa25.24■■□□□ 1.63
COMMD4-204ENST00000561662 CRKLP46109 303 aaKnown RBP25.23■■□□□ 1.63
COMMD4-204ENST00000561662 CDCA8Q53HL2 280 aa25.23■■□□□ 1.63
COMMD4-204ENST00000561662 RASSF7Q02833 373 aa25.22■■□□□ 1.63
COMMD4-204ENST00000561662 KDM6AO15550 1401 aaPredicted RBP25.21■■□□□ 1.63
COMMD4-204ENST00000561662 ZNF530Q6P9A1 599 aaPredicted RBP25.21■■□□□ 1.63
COMMD4-204ENST00000561662 SMC1BQ8NDV3 1235 aa25.2■■□□□ 1.62
COMMD4-204ENST00000561662 USP42Q9H9J4 1324 aaKnown RBP25.19■■□□□ 1.62
COMMD4-204ENST00000561662 ZNF831Q5JPB2 1677 aa25.19■■□□□ 1.62
COMMD4-204ENST00000561662 PRELPP51888 382 aa25.18■■□□□ 1.62
COMMD4-204ENST00000561662 HSP90AB1P08238 724 aaKnown RBP25.17■■□□□ 1.62
COMMD4-204ENST00000561662 POLR3GLQ9BT43 218 aa25.17■■□□□ 1.62
COMMD4-204ENST00000561662 SBF1O95248 1867 aa25.17■■□□□ 1.62
COMMD4-204ENST00000561662 TNRC6CQ9HCJ0 1690 aaKnown RBP25.17■■□□□ 1.62
COMMD4-204ENST00000561662 POLRMTO00411 1230 aaKnown RBP25.16■■□□□ 1.62
COMMD4-204ENST00000561662 PLEKHO1Q53GL0 409 aaPredicted RBP25.16■■□□□ 1.62
COMMD4-204ENST00000561662 HSPA1AP0DMV8 641 aaKnown RBP25.15■■□□□ 1.62
COMMD4-204ENST00000561662 HSPA1BP0DMV9 641 aaKnown RBP25.15■■□□□ 1.62
COMMD4-204ENST00000561662 MTHFSP49914 203 aa25.15■■□□□ 1.62
COMMD4-204ENST00000561662 NFATC2IPQ8NCF5 419 aa25.15■■□□□ 1.62
COMMD4-204ENST00000561662 AEBP1Q8IUX7 1158 aa25.14■■□□□ 1.62
COMMD4-204ENST00000561662 CCER1Q8TC90 406 aaPredicted RBP25.13■■□□□ 1.61
COMMD4-204ENST00000561662 USPL1Q5W0Q7 1092 aa25.12■■□□□ 1.61
COMMD4-204ENST00000561662 INTS5Q6P9B9 1019 aaKnown RBP25.12■■□□□ 1.61
COMMD4-204ENST00000561662 TM4SF1P30408 202 aa25.11■■□□□ 1.61
COMMD4-204ENST00000561662 CLSPNQ9HAW4 1339 aa25.11■■□□□ 1.61
COMMD4-204ENST00000561662 TJP1Q07157 1748 aa25.1■■□□□ 1.61
COMMD4-204ENST00000561662 ZPR1O75312 459 aa25.1■■□□□ 1.61
COMMD4-204ENST00000561662 C1orf141Q5JVX7 400 aa25.1■■□□□ 1.61
COMMD4-204ENST00000561662 VEGFAP15692 232 aaPredicted RBP25.09■■□□□ 1.61
COMMD4-204ENST00000561662 LMNB1P20700 586 aa25.09■■□□□ 1.61
COMMD4-204ENST00000561662 DNAJC10Q8IXB1 793 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms