RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 DPEP1P16444 411 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 ATP6V1AP38606 617 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 TMF1P82094 1093 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 NLGN1Q8N2Q7 840 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 PIGBQ92521 554 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 RRAGCQ9HB90 399 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 RNF181Q9P0P0 153 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 PARP3Q9Y6F1 533 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 KIF13BQ9NQT8 1826 aa13.02□□□□□ -0.33
SMAD3-215ENST00000560424 TRAPPC3LQ5T215 181 aa13.01□□□□□ -0.33
SMAD3-215ENST00000560424 TMOD3Q9NYL9 352 aa13.01□□□□□ -0.33
SMAD3-215ENST00000560424 RTCBQ9Y3I0 505 aaKnown RBP13.01□□□□□ -0.33
SMAD3-215ENST00000560424 PKD1L3Q7Z443 1732 aa13□□□□□ -0.33
SMAD3-215ENST00000560424 C10orf71Q711Q0 1435 aa13□□□□□ -0.33
SMAD3-215ENST00000560424 CYP27B1O15528 508 aa13□□□□□ -0.33
SMAD3-215ENST00000560424 NEUROD1Q13562 356 aa13□□□□□ -0.33
SMAD3-215ENST00000560424 PIM2Q9P1W9 311 aa13□□□□□ -0.33
SMAD3-215ENST00000560424 TNRC6CQ9HCJ0 1690 aaKnown RBP12.99□□□□□ -0.33
SMAD3-215ENST00000560424 SPG7Q9UQ90 795 aa12.99□□□□□ -0.33
SMAD3-215ENST00000560424 KIAA1551Q9HCM1 1747 aa12.99□□□□□ -0.33
SMAD3-215ENST00000560424 RFC4P35249 363 aa12.98□□□□□ -0.33
SMAD3-215ENST00000560424 DALRD3Q5D0E6 543 aaKnown RBP12.98□□□□□ -0.33
SMAD3-215ENST00000560424 PUS7Q96PZ0 661 aaKnown RBP12.98□□□□□ -0.33
SMAD3-215ENST00000560424 INSRP06213 1382 aa12.97□□□□□ -0.33
SMAD3-215ENST00000560424 PCNTO95613 3336 aa12.97□□□□□ -0.33
SMAD3-215ENST00000560424 ITPK1Q13572 414 aa12.97□□□□□ -0.33
SMAD3-215ENST00000560424 HSP90AB2PQ58FF8 381 aa12.97□□□□□ -0.33
SMAD3-215ENST00000560424 ARFGEF1Q9Y6D6 1849 aa12.97□□□□□ -0.33
SMAD3-215ENST00000560424 C4AP0C0L4 1744 aa12.96□□□□□ -0.33
SMAD3-215ENST00000560424 FLT4P35916 1363 aa12.96□□□□□ -0.33
SMAD3-215ENST00000560424 ADRA2BP18089 450 aa12.96□□□□□ -0.33
SMAD3-215ENST00000560424 DCAF5Q96JK2 942 aa12.96□□□□□ -0.33
SMAD3-215ENST00000560424 GGNBP2Q9H3C7 697 aa12.96□□□□□ -0.33
SMAD3-215ENST00000560424 ASAP1Q9ULH1 1129 aa12.96□□□□□ -0.33
SMAD3-215ENST00000560424 MAP2P11137 1827 aaKnown RBP12.96□□□□□ -0.33
SMAD3-215ENST00000560424 BRCA1P38398 1863 aaKnown RBP12.95□□□□□ -0.34
SMAD3-215ENST00000560424 SIN3AQ96ST3 1273 aa12.95□□□□□ -0.34
SMAD3-215ENST00000560424 GYS1P13807 737 aa12.94□□□□□ -0.34
SMAD3-215ENST00000560424 VEGFAP15692 232 aaPredicted RBP12.94□□□□□ -0.34
SMAD3-215ENST00000560424 NKX1-1Q15270 411 aaPredicted RBP12.94□□□□□ -0.34
SMAD3-215ENST00000560424 ARHGEF1Q92888 912 aaKnown RBP12.94□□□□□ -0.34
SMAD3-215ENST00000560424 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
SMAD3-215ENST00000560424 ZC3H4Q9UPT8 1303 aaKnown RBP12.93□□□□□ -0.34
SMAD3-215ENST00000560424 SLC24A1O60721 1099 aa12.93□□□□□ -0.34
SMAD3-215ENST00000560424 IFNL2Q8IZJ0 200 aa12.93□□□□□ -0.34
SMAD3-215ENST00000560424 KIF24Q5T7B8 1368 aa12.93□□□□□ -0.34
SMAD3-215ENST00000560424 SLC34A2O95436 690 aa12.92□□□□□ -0.34
SMAD3-215ENST00000560424 KCNA3P22001 575 aa12.92□□□□□ -0.34
SMAD3-215ENST00000560424 ATG3Q9NT62 314 aa12.92□□□□□ -0.34
SMAD3-215ENST00000560424 TIMELESSQ9UNS1 1208 aa12.92□□□□□ -0.34
SMAD3-215ENST00000560424 FYB1O15117 783 aa12.91□□□□□ -0.34
SMAD3-215ENST00000560424 PPM1GO15355 546 aaPredicted RBP12.91□□□□□ -0.34
SMAD3-215ENST00000560424 RC3H1Q5TC82 1133 aaKnown RBP12.91□□□□□ -0.34
SMAD3-215ENST00000560424 GLTPD2A6NH11 291 aa12.9□□□□□ -0.34
SMAD3-215ENST00000560424 RPS6KA4O75676 772 aa12.9□□□□□ -0.34
SMAD3-215ENST00000560424 CHRNA5P30532 468 aa12.9□□□□□ -0.34
SMAD3-215ENST00000560424 AIDAQ96BJ3 306 aa12.9□□□□□ -0.34
SMAD3-215ENST00000560424 CNTNAP4Q9C0A0 1308 aa12.89□□□□□ -0.35
SMAD3-215ENST00000560424 PHKG2P15735 406 aa12.89□□□□□ -0.35
SMAD3-215ENST00000560424 LMNB1P20700 586 aa12.89□□□□□ -0.35
SMAD3-215ENST00000560424 RASSF7Q02833 373 aa12.89□□□□□ -0.35
SMAD3-215ENST00000560424 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.89□□□□□ -0.353e-7■□□□□ 8.4
SMAD3-215ENST00000560424 SBF1O95248 1867 aa12.89□□□□□ -0.35
SMAD3-215ENST00000560424 DPY19L2Q6NUT2 758 aa12.88□□□□□ -0.35
SMAD3-215ENST00000560424 MKRN1Q9UHC7 482 aaKnown RBP12.88□□□□□ -0.35
SMAD3-215ENST00000560424 KDRP35968 1356 aa12.88□□□□□ -0.35
SMAD3-215ENST00000560424 KIF20BQ96Q89 1820 aa12.88□□□□□ -0.35
SMAD3-215ENST00000560424 EMILIN1Q9Y6C2 1016 aa12.87□□□□□ -0.35
SMAD3-215ENST00000560424 HSP90AB1P08238 724 aaKnown RBP12.86□□□□□ -0.35
SMAD3-215ENST00000560424 FKBP8Q14318 412 aa12.86□□□□□ -0.35
SMAD3-215ENST00000560424 CREBZFQ9NS37 354 aa12.86□□□□□ -0.35
SMAD3-215ENST00000560424 ZNF831Q5JPB2 1677 aa12.86□□□□□ -0.35
SMAD3-215ENST00000560424 COL5A3P25940 1745 aaPredicted RBP12.85□□□□□ -0.35
SMAD3-215ENST00000560424 ST20-MTHFSA0A0A6YYL1 179 aa12.85□□□□□ -0.35
SMAD3-215ENST00000560424 ERVV-2B6SEH9 535 aa12.85□□□□□ -0.35
SMAD3-215ENST00000560424 ZPR1O75312 459 aa12.85□□□□□ -0.35
SMAD3-215ENST00000560424 EYA1Q99502 592 aa12.85□□□□□ -0.35
SMAD3-215ENST00000560424 PRDM10Q9NQV6 1147 aa12.85□□□□□ -0.35
SMAD3-215ENST00000560424 SRP68Q9UHB9 627 aaKnown RBP12.85□□□□□ -0.35
SMAD3-215ENST00000560424 USP42Q9H9J4 1324 aaKnown RBP12.85□□□□□ -0.35
SMAD3-215ENST00000560424 TONSLQ96HA7 1378 aa12.84□□□□□ -0.35
SMAD3-215ENST00000560424 FOXN1O15353 648 aa12.84□□□□□ -0.35
SMAD3-215ENST00000560424 CTCFP49711 727 aaPredicted RBP12.84□□□□□ -0.35
SMAD3-215ENST00000560424 CABP4P57796 275 aa12.84□□□□□ -0.35
SMAD3-215ENST00000560424 DDR1Q08345 913 aa12.84□□□□□ -0.35
SMAD3-215ENST00000560424 SLC4A9Q96Q91 983 aa12.84□□□□□ -0.35
SMAD3-215ENST00000560424 NCAPD2Q15021 1401 aa12.84□□□□□ -0.35
SMAD3-215ENST00000560424 TIAM2Q8IVF5 1701 aa12.84□□□□□ -0.35
SMAD3-215ENST00000560424 PTCD1O75127 700 aaKnown RBP12.83□□□□□ -0.36
SMAD3-215ENST00000560424 CRKLP46109 303 aaKnown RBP12.83□□□□□ -0.36
SMAD3-215ENST00000560424 TTLL6Q8N841 843 aa12.83□□□□□ -0.36
SMAD3-215ENST00000560424 TESK2Q96S53 571 aa12.83□□□□□ -0.36
SMAD3-215ENST00000560424 KDM6AO15550 1401 aaPredicted RBP12.82□□□□□ -0.36
SMAD3-215ENST00000560424 POLRMTO00411 1230 aaKnown RBP12.82□□□□□ -0.36
SMAD3-215ENST00000560424 FAM161AQ3B820 660 aa12.82□□□□□ -0.36
SMAD3-215ENST00000560424 CHADLQ6NUI6 762 aa12.82□□□□□ -0.36
SMAD3-215ENST00000560424 PCDH10Q9P2E7 1040 aa12.82□□□□□ -0.36
SMAD3-215ENST00000560424 WASHC2AQ641Q2 1341 aa12.81□□□□□ -0.36
SMAD3-215ENST00000560424 MYH14Q7Z406 1995 aaKnown RBP12.8□□□□□ -0.36
SMAD3-215ENST00000560424 H0YIN7 160 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms