RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 KDRP35968 1356 aa11.46□□□□□ -0.57
CCDC88C-214ENST00000557507 NKX1-1Q15270 411 aaPredicted RBP11.46□□□□□ -0.57
CCDC88C-214ENST00000557507 AFDNP55196 1824 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-214ENST00000557507 GNPATO15228 680 aa11.45□□□□□ -0.58
CCDC88C-214ENST00000557507 HMGB2P26583 209 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-214ENST00000557507 ASAP1Q9ULH1 1129 aa11.45□□□□□ -0.58
CCDC88C-214ENST00000557507 ADAMTS7Q9UKP4 1686 aa11.45□□□□□ -0.58
CCDC88C-214ENST00000557507 SCN11AQ9UI33 1791 aa11.44□□□□□ -0.58
CCDC88C-214ENST00000557507 DLEC1Q9Y238 1755 aa11.44□□□□□ -0.58
CCDC88C-214ENST00000557507 MMP10P09238 476 aa11.44□□□□□ -0.58
CCDC88C-214ENST00000557507 TMF1P82094 1093 aa11.43□□□□□ -0.58
CCDC88C-214ENST00000557507 CARD14Q9BXL6 1004 aa11.43□□□□□ -0.58
CCDC88C-214ENST00000557507 TMOD3Q9NYL9 352 aa11.43□□□□□ -0.58
CCDC88C-214ENST00000557507 TIAM2Q8IVF5 1701 aa11.43□□□□□ -0.58
CCDC88C-214ENST00000557507 ATP6V1AP38606 617 aa11.42□□□□□ -0.58
CCDC88C-214ENST00000557507 APLP1P51693 650 aa11.42□□□□□ -0.58
CCDC88C-214ENST00000557507 EYA1Q99502 592 aa11.42□□□□□ -0.58
CCDC88C-214ENST00000557507 NMRK2Q9NPI5 230 aa11.42□□□□□ -0.58
CCDC88C-214ENST00000557507 ATG3Q9NT62 314 aa11.42□□□□□ -0.58
CCDC88C-214ENST00000557507 SPG7Q9UQ90 795 aa11.42□□□□□ -0.58
CCDC88C-214ENST00000557507 SLC24A1O60721 1099 aa11.41□□□□□ -0.58
CCDC88C-214ENST00000557507 PHKG2P15735 406 aa11.41□□□□□ -0.58
CCDC88C-214ENST00000557507 DNAJC5GQ8N7S2 189 aa11.41□□□□□ -0.58
CCDC88C-214ENST00000557507 SLC4A9Q96Q91 983 aa11.41□□□□□ -0.58
CCDC88C-214ENST00000557507 BCS1LQ9Y276 419 aa11.41□□□□□ -0.58
CCDC88C-214ENST00000557507 A0A0G2JLW4 131 aa11.4□□□□□ -0.58
CCDC88C-214ENST00000557507 PPM1GO15355 546 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-214ENST00000557507 TOMM70O94826 608 aa11.4□□□□□ -0.58
CCDC88C-214ENST00000557507 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.4□□□□□ -0.58
CCDC88C-214ENST00000557507 KCPQ6ZWJ8 1503 aa11.4□□□□□ -0.59
CCDC88C-214ENST00000557507 WASHC2AQ641Q2 1341 aa11.39□□□□□ -0.59
CCDC88C-214ENST00000557507 PCNTO95613 3336 aa11.39□□□□□ -0.59
CCDC88C-214ENST00000557507 KDM6AO15550 1401 aaPredicted RBP11.39□□□□□ -0.59
CCDC88C-214ENST00000557507 DPEP1P16444 411 aa11.39□□□□□ -0.59
CCDC88C-214ENST00000557507 TGFB2P61812 414 aa11.39□□□□□ -0.59
CCDC88C-214ENST00000557507 IFNL2Q8IZJ0 200 aa11.39□□□□□ -0.59
CCDC88C-214ENST00000557507 CACNA1SQ13698 1873 aa11.38□□□□□ -0.59
CCDC88C-214ENST00000557507 NRXN2Q9P2S2 1712 aa11.38□□□□□ -0.59
CCDC88C-214ENST00000557507 GYS1P13807 737 aa11.38□□□□□ -0.59
CCDC88C-214ENST00000557507 ARHGAP27Q6ZUM4 889 aa11.38□□□□□ -0.59
CCDC88C-214ENST00000557507 RTCBQ9Y3I0 505 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-214ENST00000557507 DICER1Q9UPY3 1922 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-214ENST00000557507 PLEKHG2Q9H7P9 1386 aa11.38□□□□□ -0.59
CCDC88C-214ENST00000557507 CNTNAP4Q9C0A0 1308 aa11.37□□□□□ -0.59
CCDC88C-214ENST00000557507 FCHSD2O94868 740 aa11.37□□□□□ -0.59
CCDC88C-214ENST00000557507 HTRA3P83110 453 aa11.37□□□□□ -0.59
CCDC88C-214ENST00000557507 TRAPPC3LQ5T215 181 aa11.37□□□□□ -0.59
CCDC88C-214ENST00000557507 ARHGEF1Q92888 912 aaKnown RBP11.37□□□□□ -0.59
CCDC88C-214ENST00000557507 CCDC87Q9NVE4 849 aa11.37□□□□□ -0.59
CCDC88C-214ENST00000557507 POLKQ9UBT6 870 aa11.37□□□□□ -0.59
CCDC88C-214ENST00000557507 ADRA2BP18089 450 aa11.36□□□□□ -0.59
CCDC88C-214ENST00000557507 KCNA3P22001 575 aa11.36□□□□□ -0.59
CCDC88C-214ENST00000557507 EIF4A2Q14240 407 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-214ENST00000557507 C9orf131Q5VYM1 1079 aa11.36□□□□□ -0.59
CCDC88C-214ENST00000557507 NLGN1Q8N2Q7 840 aa11.36□□□□□ -0.59
CCDC88C-214ENST00000557507 RBM42Q9BTD8 480 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-214ENST00000557507 ANKRD31Q8N7Z5 1873 aa11.36□□□□□ -0.59
CCDC88C-214ENST00000557507 CDCA8Q53HL2 280 aa11.35□□□□□ -0.59
CCDC88C-214ENST00000557507 RC3H1Q5TC82 1133 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-214ENST00000557507 RBM46Q8TBY0 533 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-214ENST00000557507 UBR2Q8IWV8 1755 aa11.34□□□□□ -0.59
CCDC88C-214ENST00000557507 RPS6KA4O75676 772 aa11.34□□□□□ -0.59
CCDC88C-214ENST00000557507 DDR1Q08345 913 aa11.34□□□□□ -0.59
CCDC88C-214ENST00000557507 DCAF5Q96JK2 942 aa11.34□□□□□ -0.59
CCDC88C-214ENST00000557507 PARP3Q9Y6F1 533 aa11.34□□□□□ -0.59
CCDC88C-214ENST00000557507 COL11A2P13942 1736 aaPredicted RBP11.34□□□□□ -0.59
CCDC88C-214ENST00000557507 ERVV-2B6SEH9 535 aa11.33□□□□□ -0.6
CCDC88C-214ENST00000557507 RFC4P35249 363 aa11.33□□□□□ -0.6
CCDC88C-214ENST00000557507 TRIM26Q12899 539 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-214ENST00000557507 KLRG1Q96E93 195 aa11.33□□□□□ -0.6
CCDC88C-214ENST00000557507 SRP68Q9UHB9 627 aaKnown RBP11.33□□□□□ -0.6
CCDC88C-214ENST00000557507 FER1L6Q2WGJ9 1857 aa11.33□□□□□ -0.6
CCDC88C-214ENST00000557507 TNNT2P45379 298 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-214ENST00000557507 FKBP8Q14318 412 aa11.32□□□□□ -0.6
CCDC88C-214ENST00000557507 COL13A1Q5TAT6 717 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-214ENST00000557507 JMYQ8N9B5 988 aa11.32□□□□□ -0.6
CCDC88C-214ENST00000557507 RNF181Q9P0P0 153 aa11.32□□□□□ -0.6
CCDC88C-214ENST00000557507 PIM2Q9P1W9 311 aa11.32□□□□□ -0.6
CCDC88C-214ENST00000557507 USP42Q9H9J4 1324 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-214ENST00000557507 SCN7AQ01118 1682 aa11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 CHRNA5P30532 468 aa11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 CRKLP46109 303 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 ZNF530Q6P9A1 599 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 C16orf71Q8IYS4 520 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 KDM2BQ8NHM5 1336 aa11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 MRC1P22897 1456 aa11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 ARFGEF2Q9Y6D5 1785 aa11.31□□□□□ -0.6
CCDC88C-214ENST00000557507 PTCD1O75127 700 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-214ENST00000557507 HSP90AB1P08238 724 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-214ENST00000557507 FSTL1Q12841 308 aa11.3□□□□□ -0.6
CCDC88C-214ENST00000557507 DALRD3Q5D0E6 543 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-214ENST00000557507 AEBP1Q8IUX7 1158 aa11.3□□□□□ -0.6
CCDC88C-214ENST00000557507 SIPA1L3O60292 1781 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-214ENST00000557507 POLRMTO00411 1230 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-214ENST00000557507 CABP4P57796 275 aa11.29□□□□□ -0.6
CCDC88C-214ENST00000557507 RASSF7Q02833 373 aa11.29□□□□□ -0.6
CCDC88C-214ENST00000557507 RRAGCQ9HB90 399 aa11.29□□□□□ -0.6
CCDC88C-214ENST00000557507 CAPN15O75808 1086 aa11.28□□□□□ -0.6
CCDC88C-214ENST00000557507 PLEKHO1Q53GL0 409 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-214ENST00000557507 BCORQ6W2J9 1755 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms