RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 ZNF831Q5JPB2 1677 aa12.71□□□□□ -0.37
VIPAS39-207ENST00000555854 ITPK1Q13572 414 aa12.71□□□□□ -0.37
VIPAS39-207ENST00000555854 SMIM5Q71RC9 77 aa12.71□□□□□ -0.37
VIPAS39-207ENST00000555854 LINC00116Q8NCU8 138 aa12.71□□□□□ -0.37
VIPAS39-207ENST00000555854 SLC16A10Q8TF71 515 aa12.71□□□□□ -0.37
VIPAS39-207ENST00000555854 SLC4A9Q96Q91 983 aa12.71□□□□□ -0.37
VIPAS39-207ENST00000555854 ATG3Q9NT62 314 aa12.71□□□□□ -0.37
VIPAS39-207ENST00000555854 ADAMTS7Q9UKP4 1686 aa12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 LOC102724428A0A0B4J2F2 783 aa12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 SIK1P57059 783 aa12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 CC2D1BQ5T0F9 858 aaKnown RBP12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 SULT6B1Q6IMI4 303 aa12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 ZNF530Q6P9A1 599 aaPredicted RBP12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 SMARCC1Q92922 1105 aaPredicted RBP12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 TMOD3Q9NYL9 352 aa12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 SCN11AQ9UI33 1791 aa12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 MRC1P22897 1456 aa12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 CICQ96RK0 1608 aaPredicted RBP12.7□□□□□ -0.38
VIPAS39-207ENST00000555854 MTHFSP49914 203 aa12.69□□□□□ -0.38
VIPAS39-207ENST00000555854 MSL1Q68DK7 614 aa12.69□□□□□ -0.38
VIPAS39-207ENST00000555854 TJP1Q07157 1748 aa12.68□□□□□ -0.38
VIPAS39-207ENST00000555854 PLEKHO1Q53GL0 409 aaPredicted RBP12.68□□□□□ -0.38
VIPAS39-207ENST00000555854 NLGN2Q8NFZ4 835 aa12.67□□□□□ -0.38
VIPAS39-207ENST00000555854 DCAF5Q96JK2 942 aa12.67□□□□□ -0.38
VIPAS39-207ENST00000555854 VIRMAQ69YN4 1812 aaKnown RBP12.67□□□□□ -0.38
VIPAS39-207ENST00000555854 ERVV-2B6SEH9 535 aa12.66□□□□□ -0.38
VIPAS39-207ENST00000555854 AMOTQ4VCS5 1084 aa12.66□□□□□ -0.38
VIPAS39-207ENST00000555854 AK7Q96M32 723 aa12.66□□□□□ -0.38
VIPAS39-207ENST00000555854 MYH14Q7Z406 1995 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-207ENST00000555854 C4AP0C0L4 1744 aa12.65□□□□□ -0.38
VIPAS39-207ENST00000555854 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.65□□□□□ -0.38
VIPAS39-207ENST00000555854 CAPN15O75808 1086 aa12.65□□□□□ -0.38
VIPAS39-207ENST00000555854 PHF14O94880 888 aa12.65□□□□□ -0.38
VIPAS39-207ENST00000555854 HMOX1P09601 288 aa12.65□□□□□ -0.38
VIPAS39-207ENST00000555854 POLD1P28340 1107 aa12.65□□□□□ -0.38
VIPAS39-207ENST00000555854 KCPQ6ZWJ8 1503 aa12.64□□□□□ -0.39
VIPAS39-207ENST00000555854 SLC4A2P04920 1241 aa12.64□□□□□ -0.39
VIPAS39-207ENST00000555854 HSP90AB1P08238 724 aaKnown RBP12.64□□□□□ -0.39
VIPAS39-207ENST00000555854 YY1P25490 414 aa12.64□□□□□ -0.39
VIPAS39-207ENST00000555854 SSFA2P28290 1259 aa12.64□□□□□ -0.39
VIPAS39-207ENST00000555854 ATP6V1AP38606 617 aa12.64□□□□□ -0.39
VIPAS39-207ENST00000555854 CNGB1Q14028 1251 aaPredicted RBP12.63□□□□□ -0.39
VIPAS39-207ENST00000555854 KIAA1551Q9HCM1 1747 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 GNPATO15228 680 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 DIAPH1O60610 1272 aaKnown RBP12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 MTHFSDQ2M296 383 aaKnown RBP12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 AKAP4Q5JQC9 854 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 C1orf141Q5JVX7 400 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 KLHL34Q8N239 644 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 FLAD1Q8NFF5 587 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 LGR6Q9HBX8 967 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 CNTNAP4Q9C0A0 1308 aa12.62□□□□□ -0.39
VIPAS39-207ENST00000555854 UBR2Q8IWV8 1755 aa12.61□□□□□ -0.39
VIPAS39-207ENST00000555854 CABP4P57796 275 aa12.61□□□□□ -0.39
VIPAS39-207ENST00000555854 NFATC2IPQ8NCF5 419 aa12.61□□□□□ -0.39
VIPAS39-207ENST00000555854 RBM42Q9BTD8 480 aaKnown RBP12.61□□□□□ -0.39
VIPAS39-207ENST00000555854 CHD4Q14839 1912 aa12.6□□□□□ -0.39
VIPAS39-207ENST00000555854 YBX3P16989 372 aaKnown RBP eCLIP12.6□□□□□ -0.39
VIPAS39-207ENST00000555854 DSG3P32926 999 aa12.6□□□□□ -0.39
VIPAS39-207ENST00000555854 SLC52A2Q9HAB3 445 aa12.6□□□□□ -0.39
VIPAS39-207ENST00000555854 SIPA1L3O60292 1781 aaPredicted RBP12.6□□□□□ -0.39
VIPAS39-207ENST00000555854 RNMTO43148 476 aaKnown RBP12.59□□□□□ -0.39
VIPAS39-207ENST00000555854 KIF13BQ9NQT8 1826 aa12.59□□□□□ -0.39
VIPAS39-207ENST00000555854 PTCD1O75127 700 aaKnown RBP12.58□□□□□ -0.4
VIPAS39-207ENST00000555854 C10orf71Q711Q0 1435 aa12.57□□□□□ -0.4
VIPAS39-207ENST00000555854 PPP2R1AP30153 589 aa12.57□□□□□ -0.4
VIPAS39-207ENST00000555854 SLC39A6Q13433 755 aa12.57□□□□□ -0.4
VIPAS39-207ENST00000555854 RC3H1Q5TC82 1133 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-207ENST00000555854 U2SURPO15042 1029 aaKnown RBP12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 RPS6KA4O75676 772 aa12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 HMGB2P26583 209 aaKnown RBP12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 CRKLP46109 303 aaKnown RBP12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 DNAJC10Q8IXB1 793 aa12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 ARHGEF1Q92888 912 aaKnown RBP12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 RSPH6AQ9H0K4 717 aa12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 RTCBQ9Y3I0 505 aaKnown RBP12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 CD2APQ9Y5K6 639 aa12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 PXDNLA1KZ92 1463 aa12.56□□□□□ -0.4
VIPAS39-207ENST00000555854 MMP10P09238 476 aa12.55□□□□□ -0.4
VIPAS39-207ENST00000555854 GYS1P13807 737 aa12.55□□□□□ -0.4
VIPAS39-207ENST00000555854 GPR162Q16538 588 aa12.55□□□□□ -0.4
VIPAS39-207ENST00000555854 INTS5Q6P9B9 1019 aaKnown RBP12.55□□□□□ -0.4
VIPAS39-207ENST00000555854 ZNF784Q8NCA9 323 aaPredicted RBP12.55□□□□□ -0.4
VIPAS39-207ENST00000555854 PHACTR3Q96KR7 559 aa12.55□□□□□ -0.4
VIPAS39-207ENST00000555854 CEMIPQ8WUJ3 1361 aa12.55□□□□□ -0.4
VIPAS39-207ENST00000555854 PRKAR2BP31323 418 aa12.54□□□□□ -0.4
VIPAS39-207ENST00000555854 PELP1Q8IZL8 1130 aaKnown RBP12.54□□□□□ -0.4
VIPAS39-207ENST00000555854 IL17REQ8NFR9 667 aa12.54□□□□□ -0.4
VIPAS39-207ENST00000555854 SRP68Q9UHB9 627 aaKnown RBP12.54□□□□□ -0.4
VIPAS39-207ENST00000555854 USP42Q9H9J4 1324 aaKnown RBP12.54□□□□□ -0.4
VIPAS39-207ENST00000555854 TRAPPC3LQ5T215 181 aa12.53□□□□□ -0.4
VIPAS39-207ENST00000555854 SOS1Q07889 1333 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-207ENST00000555854 N4BP2Q86UW6 1770 aaPredicted RBP12.53□□□□□ -0.4
VIPAS39-207ENST00000555854 BRCA1P38398 1863 aaKnown RBP12.53□□□□□ -0.4
VIPAS39-207ENST00000555854 CYP19A1P11511 503 aaPredicted RBP12.52□□□□□ -0.41
VIPAS39-207ENST00000555854 GAS2L2Q8NHY3 880 aa12.52□□□□□ -0.41
VIPAS39-207ENST00000555854 WWC3Q9ULE0 1092 aa12.52□□□□□ -0.41
VIPAS39-207ENST00000555854 ZBTB1Q9Y2K1 713 aa12.52□□□□□ -0.41
VIPAS39-207ENST00000555854 DDR1Q08345 913 aa12.51□□□□□ -0.41
VIPAS39-207ENST00000555854 CCDC87Q9NVE4 849 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms