RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 NKX1-1Q15270 411 aaPredicted RBP15.71■□□□□ 0.11
VPS33B-204ENST00000554660 TMOD3Q9NYL9 352 aa15.71■□□□□ 0.11
VPS33B-204ENST00000554660 PXDNLA1KZ92 1463 aa15.71■□□□□ 0.1
VPS33B-204ENST00000554660 ASAP1Q9ULH1 1129 aa15.7■□□□□ 0.1
VPS33B-204ENST00000554660 SPG7Q9UQ90 795 aa15.7■□□□□ 0.1
VPS33B-204ENST00000554660 N4BP2Q86UW6 1770 aaPredicted RBP15.68■□□□□ 0.1
VPS33B-204ENST00000554660 KDRP35968 1356 aa15.68■□□□□ 0.1
VPS33B-204ENST00000554660 KIF3CO14782 793 aa15.68■□□□□ 0.1
VPS33B-204ENST00000554660 MMP10P09238 476 aa15.68■□□□□ 0.1
VPS33B-204ENST00000554660 ATP6V1AP38606 617 aa15.68■□□□□ 0.1
VPS33B-204ENST00000554660 EYA1Q99502 592 aa15.68■□□□□ 0.1
VPS33B-204ENST00000554660 KIF13BQ9NQT8 1826 aa15.68■□□□□ 0.1
VPS33B-204ENST00000554660 PHKG2P15735 406 aa15.67■□□□□ 0.1
VPS33B-204ENST00000554660 C10orf71Q711Q0 1435 aa15.67■□□□□ 0.1
VPS33B-204ENST00000554660 CDCA8Q53HL2 280 aa15.66■□□□□ 0.1
VPS33B-204ENST00000554660 ATG3Q9NT62 314 aa15.66■□□□□ 0.1
VPS33B-204ENST00000554660 WASHC2AQ641Q2 1341 aa15.66■□□□□ 0.1
VPS33B-204ENST00000554660 IFNL2Q8IZJ0 200 aa15.65■□□□□ 0.1
VPS33B-204ENST00000554660 C4AP0C0L4 1744 aa15.65■□□□□ 0.1
VPS33B-204ENST00000554660 COL5A3P25940 1745 aaPredicted RBP15.65■□□□□ 0.1
VPS33B-204ENST00000554660 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.64■□□□□ 0.09
VPS33B-204ENST00000554660 BCS1LQ9Y276 419 aa15.64■□□□□ 0.09
VPS33B-204ENST00000554660 A0A0G2JLW4 131 aa15.63■□□□□ 0.09
VPS33B-204ENST00000554660 SLC4A9Q96Q91 983 aa15.63■□□□□ 0.09
VPS33B-204ENST00000554660 TNNT2P45379 298 aaPredicted RBP15.62■□□□□ 0.09
VPS33B-204ENST00000554660 EIF4A2Q14240 407 aaKnown RBP15.62■□□□□ 0.09
VPS33B-204ENST00000554660 POLKQ9UBT6 870 aa15.62■□□□□ 0.09
VPS33B-204ENST00000554660 RTCBQ9Y3I0 505 aaKnown RBP15.62■□□□□ 0.09
VPS33B-204ENST00000554660 ZNF831Q5JPB2 1677 aa15.62■□□□□ 0.09
VPS33B-204ENST00000554660 BRCA1P38398 1863 aaKnown RBP15.61■□□□□ 0.09
VPS33B-204ENST00000554660 RBM42Q9BTD8 480 aaKnown RBP15.61■□□□□ 0.09
VPS33B-204ENST00000554660 KDM6AO15550 1401 aaPredicted RBP15.6■□□□□ 0.09
VPS33B-204ENST00000554660 TRAPPC3LQ5T215 181 aa15.6■□□□□ 0.09
VPS33B-204ENST00000554660 ARHGEF1Q92888 912 aaKnown RBP15.6■□□□□ 0.09
VPS33B-204ENST00000554660 NMRK2Q9NPI5 230 aa15.6■□□□□ 0.09
VPS33B-204ENST00000554660 GYS1P13807 737 aa15.59■□□□□ 0.09
VPS33B-204ENST00000554660 DPEP1P16444 411 aa15.59■□□□□ 0.09
VPS33B-204ENST00000554660 TGFB2P61812 414 aa15.59■□□□□ 0.09
VPS33B-204ENST00000554660 ARHGAP27Q6ZUM4 889 aa15.59■□□□□ 0.09
VPS33B-204ENST00000554660 CNTNAP4Q9C0A0 1308 aa15.59■□□□□ 0.09
VPS33B-204ENST00000554660 FCHSD2O94868 740 aa15.58■□□□□ 0.08
VPS33B-204ENST00000554660 APLP1P51693 650 aa15.58■□□□□ 0.08
VPS33B-204ENST00000554660 NLGN1Q8N2Q7 840 aa15.58■□□□□ 0.08
VPS33B-204ENST00000554660 CCDC87Q9NVE4 849 aa15.58■□□□□ 0.08
VPS33B-204ENST00000554660 TOMM70O94826 608 aa15.57■□□□□ 0.08
VPS33B-204ENST00000554660 ADRA2BP18089 450 aa15.57■□□□□ 0.08
VPS33B-204ENST00000554660 POLR3GLQ9BT43 218 aa15.57■□□□□ 0.08
VPS33B-204ENST00000554660 PLEKHG2Q9H7P9 1386 aa15.57■□□□□ 0.08
VPS33B-204ENST00000554660 WDR90Q96KV7 1748 aa15.57■□□□□ 0.08
VPS33B-204ENST00000554660 RFC4P35249 363 aa15.56■□□□□ 0.08
VPS33B-204ENST00000554660 DCAF5Q96JK2 942 aa15.56■□□□□ 0.08
VPS33B-204ENST00000554660 PARP3Q9Y6F1 533 aa15.56■□□□□ 0.08
VPS33B-204ENST00000554660 TJP1Q07157 1748 aa15.56■□□□□ 0.08
VPS33B-204ENST00000554660 MYH14Q7Z406 1995 aaKnown RBP15.56■□□□□ 0.08
VPS33B-204ENST00000554660 ARFGEF1Q9Y6D6 1849 aa15.55■□□□□ 0.08
VPS33B-204ENST00000554660 ERVV-2B6SEH9 535 aa15.55■□□□□ 0.08
VPS33B-204ENST00000554660 RPS6KA4O75676 772 aa15.55■□□□□ 0.08
VPS33B-204ENST00000554660 RC3H1Q5TC82 1133 aaKnown RBP15.55■□□□□ 0.08
VPS33B-204ENST00000554660 ZNF530Q6P9A1 599 aaPredicted RBP15.55■□□□□ 0.08
VPS33B-204ENST00000554660 YTHDC1Q96MU7 727 aaKnown RBP15.55■□□□□ 0.08
VPS33B-204ENST00000554660 SRP68Q9UHB9 627 aaKnown RBP15.55■□□□□ 0.08
VPS33B-204ENST00000554660 KCPQ6ZWJ8 1503 aa15.54■□□□□ 0.08
VPS33B-204ENST00000554660 PTCD1O75127 700 aaKnown RBP15.54■□□□□ 0.08
VPS33B-204ENST00000554660 KCNA3P22001 575 aa15.54■□□□□ 0.08
VPS33B-204ENST00000554660 CABP4P57796 275 aa15.54■□□□□ 0.08
VPS33B-204ENST00000554660 C9orf131Q5VYM1 1079 aa15.54■□□□□ 0.08
VPS33B-204ENST00000554660 DNAJC5GQ8N7S2 189 aa15.54■□□□□ 0.08
VPS33B-204ENST00000554660 HSP90AB1P08238 724 aaKnown RBP15.53■□□□□ 0.08
VPS33B-204ENST00000554660 HTRA3P83110 453 aa15.53■□□□□ 0.08
VPS33B-204ENST00000554660 AEBP1Q8IUX7 1158 aa15.53■□□□□ 0.08
VPS33B-204ENST00000554660 CRKLP46109 303 aaKnown RBP15.52■□□□□ 0.08
VPS33B-204ENST00000554660 DDR1Q08345 913 aa15.52■□□□□ 0.08
VPS33B-204ENST00000554660 FKBP8Q14318 412 aa15.52■□□□□ 0.08
VPS33B-204ENST00000554660 PLEKHO1Q53GL0 409 aaPredicted RBP15.52■□□□□ 0.08
VPS33B-204ENST00000554660 ADAMTS7Q9UKP4 1686 aa15.51■□□□□ 0.07
VPS33B-204ENST00000554660 USP42Q9H9J4 1324 aaKnown RBP15.51■□□□□ 0.07
VPS33B-204ENST00000554660 CHRNA5P30532 468 aa15.5■□□□□ 0.07
VPS33B-204ENST00000554660 MTHFSP49914 203 aa15.5■□□□□ 0.07
VPS33B-204ENST00000554660 C16orf71Q8IYS4 520 aaPredicted RBP15.5■□□□□ 0.07
VPS33B-204ENST00000554660 RBM46Q8TBY0 533 aaKnown RBP15.5■□□□□ 0.07
VPS33B-204ENST00000554660 RNF181Q9P0P0 153 aa15.5■□□□□ 0.07
VPS33B-204ENST00000554660 PIM2Q9P1W9 311 aa15.5■□□□□ 0.07
VPS33B-204ENST00000554660 TNRC6CQ9HCJ0 1690 aaKnown RBP15.5■□□□□ 0.07
VPS33B-204ENST00000554660 CCER2I3L3R5 266 aa15.49■□□□□ 0.07
VPS33B-204ENST00000554660 AMOTQ4VCS5 1084 aa15.49■□□□□ 0.07
VPS33B-204ENST00000554660 DALRD3Q5D0E6 543 aaKnown RBP15.49■□□□□ 0.07
VPS33B-204ENST00000554660 C1orf141Q5JVX7 400 aa15.49■□□□□ 0.07
VPS33B-204ENST00000554660 NFATC2IPQ8NCF5 419 aa15.48■□□□□ 0.07
VPS33B-204ENST00000554660 KDM2BQ8NHM5 1336 aa15.47■□□□□ 0.07
VPS33B-204ENST00000554660 SCN11AQ9UI33 1791 aa15.47■□□□□ 0.07
VPS33B-204ENST00000554660 POLRMTO00411 1230 aaKnown RBP15.46■□□□□ 0.07
VPS33B-204ENST00000554660 RASSF7Q02833 373 aa15.46■□□□□ 0.07
VPS33B-204ENST00000554660 SULT6B1Q6IMI4 303 aa15.46■□□□□ 0.07
VPS33B-204ENST00000554660 INTS5Q6P9B9 1019 aaKnown RBP15.46■□□□□ 0.07
VPS33B-204ENST00000554660 KLRG1Q96E93 195 aa15.46■□□□□ 0.07
VPS33B-204ENST00000554660 PANK3Q9H999 370 aa15.46■□□□□ 0.07
VPS33B-204ENST00000554660 FSTL1Q12841 308 aa15.45■□□□□ 0.06
VPS33B-204ENST00000554660 USPL1Q5W0Q7 1092 aa15.45■□□□□ 0.06
VPS33B-204ENST00000554660 RRAGCQ9HB90 399 aa15.45■□□□□ 0.06
VPS33B-204ENST00000554660 SBF1O95248 1867 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms