RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	FANCA	O15360	1455 aa		10.17	□□□□□ -0.78
ATXN3-223	ENST00000553686	RNF20	Q5VTR2	975 aa		10.17	□□□□□ -0.78
ATXN3-223	ENST00000553686	PURB	Q96QR8	312 aa	Known RBP	10.17	□□□□□ -0.78
ATXN3-223	ENST00000553686	CEP126	Q9P2H0	1117 aa		10.17	□□□□□ -0.78
ATXN3-223	ENST00000553686	UHRF1BP1	Q6BDS2	1440 aa		10.16	□□□□□ -0.78
ATXN3-223	ENST00000553686	UPP2	O95045	317 aa		10.16	□□□□□ -0.78
ATXN3-223	ENST00000553686	C6orf118	Q5T5N4	469 aa		10.16	□□□□□ -0.78
ATXN3-223	ENST00000553686	MEIOB	Q8N635	442 aa		10.16	□□□□□ -0.78
ATXN3-223	ENST00000553686	BMP2	P12643	396 aa		10.15	□□□□□ -0.78
ATXN3-223	ENST00000553686		Q6ZVU0	165 aa		10.15	□□□□□ -0.78
ATXN3-223	ENST00000553686	ZNF784	Q8NCA9	323 aa	Predicted RBP	10.15	□□□□□ -0.78
ATXN3-223	ENST00000553686	TSEN34	Q9BSV6	310 aa	Known RBP	10.15	□□□□□ -0.78
ATXN3-223	ENST00000553686	UGGT2	Q9NYU1	1516 aa		10.15	□□□□□ -0.78
ATXN3-223	ENST00000553686	DENND4B	O75064	1496 aa	Predicted RBP	10.15	□□□□□ -0.78
ATXN3-223	ENST00000553686	ARID3C	A6NKF2	412 aa		10.14	□□□□□ -0.79
ATXN3-223	ENST00000553686	ADD1	P35611	737 aa	Known RBP	10.14	□□□□□ -0.79
ATXN3-223	ENST00000553686	CCDC125	Q86Z20	511 aa		10.14	□□□□□ -0.79
ATXN3-223	ENST00000553686	WWC1	Q8IX03	1113 aa		10.14	□□□□□ -0.79
ATXN3-223	ENST00000553686	RIMS1	Q86UR5	1692 aa	Known RBP	10.13	□□□□□ -0.79
ATXN3-223	ENST00000553686	SUPT5H	O00267	1087 aa	Known RBP	10.13	□□□□□ -0.79
ATXN3-223	ENST00000553686	LILRA1	O75019	489 aa		10.13	□□□□□ -0.79
ATXN3-223	ENST00000553686	HSPA1L	P34931	641 aa		10.13	□□□□□ -0.79
ATXN3-223	ENST00000553686	LINC00528	Q8N1L1	170 aa		10.13	□□□□□ -0.79
ATXN3-223	ENST00000553686	TRIM52	Q96A61	297 aa		10.13	□□□□□ -0.79
ATXN3-223	ENST00000553686	TOM1	O60784	492 aa		10.12	□□□□□ -0.79
ATXN3-223	ENST00000553686	AGBL1	Q96MI9	1066 aa		10.12	□□□□□ -0.79
ATXN3-223	ENST00000553686	CYLD	Q9NQC7	956 aa		10.12	□□□□□ -0.79
ATXN3-223	ENST00000553686	FHOD3	Q2V2M9	1422 aa		10.12	□□□□□ -0.79
ATXN3-223	ENST00000553686	GOLGA3	Q08378	1498 aa		10.11	□□□□□ -0.79
ATXN3-223	ENST00000553686	SEMA3F	Q13275	785 aa		10.11	□□□□□ -0.79
ATXN3-223	ENST00000553686	ZNF775	Q96BV0	537 aa	Predicted RBP	10.11	□□□□□ -0.79
ATXN3-223	ENST00000553686	PCDHB11	Q9Y5F2	797 aa		10.11	□□□□□ -0.79
ATXN3-223	ENST00000553686	ESF1	Q9H501	851 aa	Known RBP	10.1	□□□□□ -0.79
ATXN3-223	ENST00000553686	LTBP4	Q8N2S1	1624 aa		10.1	□□□□□ -0.79
ATXN3-223	ENST00000553686	PIP4K2B	P78356	416 aa		10.09	□□□□□ -0.79
ATXN3-223	ENST00000553686	RELB	Q01201	579 aa		10.09	□□□□□ -0.79
ATXN3-223	ENST00000553686	SLFNL1	Q499Z3	407 aa		10.09	□□□□□ -0.79
ATXN3-223	ENST00000553686	MAGI2	Q86UL8	1455 aa		10.09	□□□□□ -0.79
ATXN3-223	ENST00000553686	KIAA0556	O60303	1618 aa		10.08	□□□□□ -0.8
ATXN3-223	ENST00000553686	SOX11	P35716	441 aa		10.08	□□□□□ -0.8
ATXN3-223	ENST00000553686	TSGA10IP	Q3SY00	556 aa		10.08	□□□□□ -0.8
ATXN3-223	ENST00000553686	PHTF2	Q8N3S3	785 aa		10.08	□□□□□ -0.8
ATXN3-223	ENST00000553686	CLUAP1	Q96AJ1	413 aa		10.08	□□□□□ -0.8
ATXN3-223	ENST00000553686	ZNF395	Q9H8N7	513 aa	Predicted RBP	10.08	□□□□□ -0.8
ATXN3-223	ENST00000553686	ATP10B	O94823	1461 aa		10.08	□□□□□ -0.8
ATXN3-223	ENST00000553686	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.07	□□□□□ -0.8
ATXN3-223	ENST00000553686	ARHGEF40	Q8TER5	1519 aa		10.07	□□□□□ -0.8
ATXN3-223	ENST00000553686	RAPGEF2	Q9Y4G8	1499 aa		10.07	□□□□□ -0.8
ATXN3-223	ENST00000553686	PLEKHD1	A6NEE1	506 aa		10.07	□□□□□ -0.8
ATXN3-223	ENST00000553686	ADH1A	P07327	375 aa		10.07	□□□□□ -0.8
ATXN3-223	ENST00000553686	CC2D2B	Q6DHV5	1058 aa		10.07	□□□□□ -0.8
ATXN3-223	ENST00000553686	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.07	□□□□□ -0.8
ATXN3-223	ENST00000553686	ABCA8	O94911	1581 aa		10.06	□□□□□ -0.8
ATXN3-223	ENST00000553686	SPINT1	O43278	529 aa		10.06	□□□□□ -0.8
ATXN3-223	ENST00000553686	PTGIR	P43119	386 aa		10.06	□□□□□ -0.8
ATXN3-223	ENST00000553686	ERVK-9	P63128	1117 aa		10.06	□□□□□ -0.8
ATXN3-223	ENST00000553686	RNF135	Q8IUD6	432 aa		10.06	□□□□□ -0.8
ATXN3-223	ENST00000553686	SOS2	Q07890	1332 aa	Predicted RBP	10.06	□□□□□ -0.8
ATXN3-223	ENST00000553686	SOBP	A7XYQ1	873 aa		10.05	□□□□□ -0.8
ATXN3-223	ENST00000553686	MAN1A2	O60476	641 aa		10.05	□□□□□ -0.8
ATXN3-223	ENST00000553686	SCTR	P47872	440 aa		10.05	□□□□□ -0.8
ATXN3-223	ENST00000553686	KDF1	Q8NAX2	398 aa	Predicted RBP	10.05	□□□□□ -0.8
ATXN3-223	ENST00000553686	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.05	□□□□□ -0.8
ATXN3-223	ENST00000553686	TTC37	Q6PGP7	1564 aa		10.05	□□□□□ -0.8
ATXN3-223	ENST00000553686	INSM2	Q96T92	566 aa	Predicted RBP	10.04	□□□□□ -0.8
ATXN3-223	ENST00000553686	ALG2	Q9H553	416 aa		10.04	□□□□□ -0.8
ATXN3-223	ENST00000553686	TRAPPC8	Q9Y2L5	1435 aa		10.04	□□□□□ -0.8
ATXN3-223	ENST00000553686	MED1	Q15648	1581 aa	Predicted RBP	10.04	□□□□□ -0.8
ATXN3-223	ENST00000553686	ATP10A	O60312	1499 aa		10.04	□□□□□ -0.8
ATXN3-223	ENST00000553686	ABCA9	Q8IUA7	1624 aa		10.04	□□□□□ -0.8
ATXN3-223	ENST00000553686	EFCAB5	A4FU69	1503 aa		10.03	□□□□□ -0.8
ATXN3-223	ENST00000553686	ZFYVE16	Q7Z3T8	1539 aa		10.03	□□□□□ -0.8
ATXN3-223	ENST00000553686	FIGNL2	A6NMB9	653 aa		10.03	□□□□□ -0.8
ATXN3-223	ENST00000553686	TTLL8	A6PVC2	850 aa		10.03	□□□□□ -0.8
ATXN3-223	ENST00000553686	ATP5J2-PTCD1	G3V325	749 aa		10.03	□□□□□ -0.8
ATXN3-223	ENST00000553686	NCOA1	Q15788	1441 aa		10.03	□□□□□ -0.8
ATXN3-223	ENST00000553686	FRMPD1	Q5SYB0	1578 aa		10.03	□□□□□ -0.8
ATXN3-223	ENST00000553686	POM121C	A8CG34	1229 aa		10.02	□□□□□ -0.81
ATXN3-223	ENST00000553686	CTSO	P43234	321 aa	Predicted RBP	10.02	□□□□□ -0.81
ATXN3-223	ENST00000553686	DOLK	Q9UPQ8	538 aa		10.02	□□□□□ -0.81
ATXN3-223	ENST00000553686	ARHGEF12	Q9NZN5	1544 aa		10.02	□□□□□ -0.81
ATXN3-223	ENST00000553686	STRC	Q7RTU9	1775 aa		10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	MYC	P01106	439 aa	Predicted RBP	10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	USP4	Q13107	963 aa		10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	HDGFL1	Q5TGJ6	251 aa		10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	OSBPL3	Q9H4L5	887 aa		10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	POLM	Q9NP87	494 aa	Predicted RBP	10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	DNMT3L	Q9UJW3	386 aa		10.01	□□□□□ -0.81
ATXN3-223	ENST00000553686	C9orf84	Q5VXU9	1444 aa		10	□□□□□ -0.81
ATXN3-223	ENST00000553686	PREX1	Q8TCU6	1659 aa		10	□□□□□ -0.81
ATXN3-223	ENST00000553686		A6NJR5	290 aa		10	□□□□□ -0.81
ATXN3-223	ENST00000553686	PROSER2	Q86WR7	435 aa	Predicted RBP	10	□□□□□ -0.81
ATXN3-223	ENST00000553686	CHIC2	Q9UKJ5	165 aa		10	□□□□□ -0.81
ATXN3-223	ENST00000553686		A0A1W2PRU2	124 aa		9.99	□□□□□ -0.81
ATXN3-223	ENST00000553686	TRAK2	O60296	914 aa		9.99	□□□□□ -0.81
ATXN3-223	ENST00000553686	OXLD1	Q5BKU9	147 aa		9.99	□□□□□ -0.81
ATXN3-223	ENST00000553686	NXF1	Q9UBU9	619 aa	Known RBP	9.99	□□□□□ -0.81
ATXN3-223	ENST00000553686	SCAPER	Q9BY12	1400 aa		9.99	□□□□□ -0.81
ATXN3-223	ENST00000553686	ZMYM4	Q5VZL5	1548 aa		9.98	□□□□□ -0.81

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