RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 CCDC87Q9NVE4 849 aa19.56■□□□□ 0.72
PRPF39-204ENST00000553605 KCPQ6ZWJ8 1503 aa19.56■□□□□ 0.72
PRPF39-204ENST00000553605 ATP6V1AP38606 617 aa19.55■□□□□ 0.72
PRPF39-204ENST00000553605 TMF1P82094 1093 aa19.55■□□□□ 0.72
PRPF39-204ENST00000553605 ITPK1Q13572 414 aa19.55■□□□□ 0.72
PRPF39-204ENST00000553605 C10orf71Q711Q0 1435 aa19.55■□□□□ 0.72
PRPF39-204ENST00000553605 SMC1BQ8NDV3 1235 aa19.55■□□□□ 0.72
PRPF39-204ENST00000553605 MAP2P11137 1827 aaKnown RBP19.54■□□□□ 0.72
PRPF39-204ENST00000553605 TRAPPC3LQ5T215 181 aa19.54■□□□□ 0.72
PRPF39-204ENST00000553605 KCNA3P22001 575 aa19.53■□□□□ 0.72
PRPF39-204ENST00000553605 NKX1-1Q15270 411 aaPredicted RBP19.53■□□□□ 0.72
PRPF39-204ENST00000553605 SIN3AQ96ST3 1273 aa19.53■□□□□ 0.72
PRPF39-204ENST00000553605 CARD11Q9BXL7 1154 aa19.53■□□□□ 0.72
PRPF39-204ENST00000553605 RNF181Q9P0P0 153 aa19.53■□□□□ 0.72
PRPF39-204ENST00000553605 HSP90AB2PQ58FF8 381 aa19.52■□□□□ 0.72
PRPF39-204ENST00000553605 ASAP1Q9ULH1 1129 aa19.52■□□□□ 0.72
PRPF39-204ENST00000553605 RTCBQ9Y3I0 505 aaKnown RBP19.52■□□□□ 0.72
PRPF39-204ENST00000553605 TMOD3Q9NYL9 352 aa19.51■□□□□ 0.71
PRPF39-204ENST00000553605 PIM2Q9P1W9 311 aa19.51■□□□□ 0.71
PRPF39-204ENST00000553605 INSRP06213 1382 aa19.5■□□□□ 0.71
PRPF39-204ENST00000553605 NEUROD1Q13562 356 aa19.5■□□□□ 0.71
PRPF39-204ENST00000553605 DCAF5Q96JK2 942 aa19.5■□□□□ 0.71
PRPF39-204ENST00000553605 PARP3Q9Y6F1 533 aa19.5■□□□□ 0.71
PRPF39-204ENST00000553605 DALRD3Q5D0E6 543 aaKnown RBP19.49■□□□□ 0.71
PRPF39-204ENST00000553605 PKD1L3Q7Z443 1732 aa19.48■□□□□ 0.71
PRPF39-204ENST00000553605 BRCA1P38398 1863 aaKnown RBP19.48■□□□□ 0.71
PRPF39-204ENST00000553605 ARHGEF1Q92888 912 aaKnown RBP19.48■□□□□ 0.71
PRPF39-204ENST00000553605 SPG7Q9UQ90 795 aa19.48■□□□□ 0.71
PRPF39-204ENST00000553605 ARFGEF1Q9Y6D6 1849 aa19.47■□□□□ 0.71
PRPF39-204ENST00000553605 FYB1O15117 783 aa19.47■□□□□ 0.71
PRPF39-204ENST00000553605 SLC34A2O95436 690 aa19.47■□□□□ 0.71
PRPF39-204ENST00000553605 GYS1P13807 737 aa19.47■□□□□ 0.71
PRPF39-204ENST00000553605 GGNBP2Q9H3C7 697 aa19.47■□□□□ 0.71
PRPF39-204ENST00000553605 ATG3Q9NT62 314 aa19.47■□□□□ 0.71
PRPF39-204ENST00000553605 TNRC6CQ9HCJ0 1690 aaKnown RBP19.46■□□□□ 0.71
PRPF39-204ENST00000553605 C4AP0C0L4 1744 aa19.46■□□□□ 0.71
PRPF39-204ENST00000553605 ADRA2BP18089 450 aa19.46■□□□□ 0.71
PRPF39-204ENST00000553605 RFC4P35249 363 aa19.46■□□□□ 0.71
PRPF39-204ENST00000553605 FLT4P35916 1363 aa19.44■□□□□ 0.7
PRPF39-204ENST00000553605 VEGFAP15692 232 aaPredicted RBP19.43■□□□□ 0.7
PRPF39-204ENST00000553605 RC3H1Q5TC82 1133 aaKnown RBP19.43■□□□□ 0.7
PRPF39-204ENST00000553605 KIF24Q5T7B8 1368 aa19.42■□□□□ 0.7
PRPF39-204ENST00000553605 RPS6KA4O75676 772 aa19.41■□□□□ 0.7
PRPF39-204ENST00000553605 SLC4A9Q96Q91 983 aa19.41■□□□□ 0.7
PRPF39-204ENST00000553605 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.41■□□□□ 0.73e-6■■□□□ 12.9
PRPF39-204ENST00000553605 GLTPD2A6NH11 291 aa19.4■□□□□ 0.7
PRPF39-204ENST00000553605 CHRNA5P30532 468 aa19.4■□□□□ 0.7
PRPF39-204ENST00000553605 IFNL2Q8IZJ0 200 aa19.4■□□□□ 0.7
PRPF39-204ENST00000553605 RBM42Q9BTD8 480 aaKnown RBP19.4■□□□□ 0.7
PRPF39-204ENST00000553605 ZC3H4Q9UPT8 1303 aaKnown RBP19.4■□□□□ 0.7
PRPF39-204ENST00000553605 SBF1O95248 1867 aa19.39■□□□□ 0.7
PRPF39-204ENST00000553605 PHKG2P15735 406 aa19.39■□□□□ 0.69
PRPF39-204ENST00000553605 CNTNAP4Q9C0A0 1308 aa19.39■□□□□ 0.69
PRPF39-204ENST00000553605 KDRP35968 1356 aa19.39■□□□□ 0.69
PRPF39-204ENST00000553605 TESK2Q96S53 571 aa19.38■□□□□ 0.69
PRPF39-204ENST00000553605 NCAPD2Q15021 1401 aa19.37■□□□□ 0.69
PRPF39-204ENST00000553605 RASSF7Q02833 373 aa19.37■□□□□ 0.69
PRPF39-204ENST00000553605 SLC24A1O60721 1099 aa19.36■□□□□ 0.69
PRPF39-204ENST00000553605 LMNB1P20700 586 aa19.36■□□□□ 0.69
PRPF39-204ENST00000553605 EMILIN1Q9Y6C2 1016 aa19.36■□□□□ 0.69
PRPF39-204ENST00000553605 TONSLQ96HA7 1378 aa19.35■□□□□ 0.69
PRPF39-204ENST00000553605 DDR1Q08345 913 aa19.35■□□□□ 0.69
PRPF39-204ENST00000553605 FKBP8Q14318 412 aa19.35■□□□□ 0.69
PRPF39-204ENST00000553605 ST20-MTHFSA0A0A6YYL1 179 aa19.34■□□□□ 0.69
PRPF39-204ENST00000553605 EYA1Q99502 592 aa19.34■□□□□ 0.69
PRPF39-204ENST00000553605 SRP68Q9UHB9 627 aaKnown RBP19.34■□□□□ 0.69
PRPF39-204ENST00000553605 KDM6AO15550 1401 aaPredicted RBP19.34■□□□□ 0.69
PRPF39-204ENST00000553605 PPM1GO15355 546 aaPredicted RBP19.33■□□□□ 0.68
PRPF39-204ENST00000553605 PRDM10Q9NQV6 1147 aa19.33■□□□□ 0.68
PRPF39-204ENST00000553605 MKRN1Q9UHC7 482 aaKnown RBP19.33■□□□□ 0.68
PRPF39-204ENST00000553605 ZNF831Q5JPB2 1677 aa19.33■□□□□ 0.68
PRPF39-204ENST00000553605 ERVV-2B6SEH9 535 aa19.32■□□□□ 0.68
PRPF39-204ENST00000553605 FOXN1O15353 648 aa19.32■□□□□ 0.68
PRPF39-204ENST00000553605 CREBZFQ9NS37 354 aa19.32■□□□□ 0.68
PRPF39-204ENST00000553605 COL5A3P25940 1745 aaPredicted RBP19.31■□□□□ 0.68
PRPF39-204ENST00000553605 USP42Q9H9J4 1324 aaKnown RBP19.31■□□□□ 0.68
PRPF39-204ENST00000553605 POTECB2RU33 542 aa19.31■□□□□ 0.68
PRPF39-204ENST00000553605 POLRMTO00411 1230 aaKnown RBP19.3■□□□□ 0.68
PRPF39-204ENST00000553605 WASHC2AQ641Q2 1341 aa19.29■□□□□ 0.68
PRPF39-204ENST00000553605 TM4SF1P30408 202 aa19.29■□□□□ 0.68
PRPF39-204ENST00000553605 CRKLP46109 303 aaKnown RBP19.29■□□□□ 0.68
PRPF39-204ENST00000553605 DPY19L2Q6NUT2 758 aa19.29■□□□□ 0.68
PRPF39-204ENST00000553605 MYH14Q7Z406 1995 aaKnown RBP19.29■□□□□ 0.68
PRPF39-204ENST00000553605 KIF20BQ96Q89 1820 aa19.26■□□□□ 0.67
PRPF39-204ENST00000553605 PTCD1O75127 700 aaKnown RBP19.26■□□□□ 0.67
PRPF39-204ENST00000553605 HSP90AB1P08238 724 aaKnown RBP19.26■□□□□ 0.67
PRPF39-204ENST00000553605 CTCFP49711 727 aaPredicted RBP19.26■□□□□ 0.67
PRPF39-204ENST00000553605 CABP4P57796 275 aa19.26■□□□□ 0.67
PRPF39-204ENST00000553605 CHADLQ6NUI6 762 aa19.26■□□□□ 0.67
PRPF39-204ENST00000553605 PCDH10Q9P2E7 1040 aa19.26■□□□□ 0.67
PRPF39-204ENST00000553605 TTLL6Q8N841 843 aa19.25■□□□□ 0.67
PRPF39-204ENST00000553605 AIDAQ96BJ3 306 aa19.25■□□□□ 0.67
PRPF39-204ENST00000553605 ZPR1O75312 459 aa19.24■□□□□ 0.67
PRPF39-204ENST00000553605 FAM161AQ3B820 660 aa19.24■□□□□ 0.67
PRPF39-204ENST00000553605 CNTNAP1P78357 1384 aa19.23■□□□□ 0.67
PRPF39-204ENST00000553605 NFKBIEO00221 500 aa19.23■□□□□ 0.67
PRPF39-204ENST00000553605 USPL1Q5W0Q7 1092 aa19.23■□□□□ 0.67
PRPF39-204ENST00000553605 TIAM2Q8IVF5 1701 aa19.22■□□□□ 0.67
PRPF39-204ENST00000553605 INTS5Q6P9B9 1019 aaKnown RBP19.22■□□□□ 0.67
PRPF39-204ENST00000553605 CCDC88AQ3V6T2 1871 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms