RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CUX1P39880 1505 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 ADH1AP07327 375 aa6.38□□□□□ -1.39
LIMA1-208ENST00000551691 NBPF20Q3BBV1 942 aa6.38□□□□□ -1.39
LIMA1-208ENST00000551691 SV2AQ7L0J3 742 aa6.38□□□□□ -1.39
LIMA1-208ENST00000551691 PRICKLE2Q7Z3G6 844 aa6.38□□□□□ -1.39
LIMA1-208ENST00000551691 TRIM34Q9BYJ4 488 aa6.38□□□□□ -1.39
LIMA1-208ENST00000551691 NANOS1Q8WY41 292 aaKnown RBP6.37□□□□□ -1.39
LIMA1-208ENST00000551691 GPSM3Q9Y4H4 160 aa6.37□□□□□ -1.39
LIMA1-208ENST00000551691 WDR97A6NE52 1622 aa6.36□□□□□ -1.39
LIMA1-208ENST00000551691 TOP2BQ02880 1626 aa6.36□□□□□ -1.39
LIMA1-208ENST00000551691 PTPRMP28827 1452 aa6.36□□□□□ -1.39
LIMA1-208ENST00000551691 PTGIRP43119 386 aa6.36□□□□□ -1.39
LIMA1-208ENST00000551691 KCNMA1Q12791 1236 aa6.36□□□□□ -1.39
LIMA1-208ENST00000551691 CCDC97Q96F63 343 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-208ENST00000551691 PCDHB9Q9Y5E1 797 aa6.36□□□□□ -1.39
LIMA1-208ENST00000551691 ASXL2Q76L83 1435 aa6.35□□□□□ -1.39
LIMA1-208ENST00000551691 GPR25O00155 361 aa6.35□□□□□ -1.39
LIMA1-208ENST00000551691 GIGYF1O75420 1035 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-208ENST00000551691 RASSF7Q02833 373 aa6.35□□□□□ -1.39
LIMA1-208ENST00000551691 NPM2Q86SE8 214 aaKnown RBP6.35□□□□□ -1.39
LIMA1-208ENST00000551691 CCDC82Q8N4S0 544 aa6.35□□□□□ -1.39
LIMA1-208ENST00000551691 CLUAP1Q96AJ1 413 aa6.35□□□□□ -1.39
LIMA1-208ENST00000551691 C1orf115Q9H7X2 142 aa6.35□□□□□ -1.39
LIMA1-208ENST00000551691 A6NJR5 290 aa6.34□□□□□ -1.39
LIMA1-208ENST00000551691 ESPNB1AK53 854 aa6.34□□□□□ -1.39
LIMA1-208ENST00000551691 MEN1O00255 615 aa6.34□□□□□ -1.39
LIMA1-208ENST00000551691 GDF11O95390 407 aa6.34□□□□□ -1.39
LIMA1-208ENST00000551691 LYSMD3Q7Z3D4 306 aa6.34□□□□□ -1.39
LIMA1-208ENST00000551691 PNMA1Q8ND90 353 aa6.34□□□□□ -1.39
LIMA1-208ENST00000551691 CCDC9Q9Y3X0 531 aaKnown RBP6.34□□□□□ -1.39
LIMA1-208ENST00000551691 TRAK2O60296 914 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 ADAMTS2O95450 1211 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 FBXO45P0C2W1 286 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 IRS1P35568 1242 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 GAS6Q14393 721 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 LYPD4Q6UWN0 246 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 TMEM151AQ8N4L1 468 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 FHAD1B1AJZ9 1412 aa6.33□□□□□ -1.4
LIMA1-208ENST00000551691 ABCA5Q8WWZ7 1642 aa6.32□□□□□ -1.4
LIMA1-208ENST00000551691 PCF11O94913 1555 aaKnown RBP6.32□□□□□ -1.4
LIMA1-208ENST00000551691 RIPOR1Q6ZS17 1223 aa6.32□□□□□ -1.4
LIMA1-208ENST00000551691 PROSER2Q86WR7 435 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-208ENST00000551691 KIF21BO75037 1637 aa6.32□□□□□ -1.4
LIMA1-208ENST00000551691 ADAMTS12P58397 1594 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 ABCA10Q8WWZ4 1543 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 ZBBXA8MT70 800 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 ARHGEF15O94989 841 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 SLURP2P0DP57 97 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 MCM6Q14566 821 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 SUZ12Q15022 739 aaKnown RBP6.31□□□□□ -1.4
LIMA1-208ENST00000551691 WWC1Q8IX03 1113 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 PTPRGP23470 1445 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 GLI2P10070 1586 aa6.31□□□□□ -1.4
LIMA1-208ENST00000551691 ARID4BQ4LE39 1312 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-208ENST00000551691 A0A1W2PRU2 124 aa6.3□□□□□ -1.4
LIMA1-208ENST00000551691 ATP5J2-PTCD1G3V325 749 aa6.3□□□□□ -1.4
LIMA1-208ENST00000551691 SCTRP47872 440 aa6.3□□□□□ -1.4
LIMA1-208ENST00000551691 MARSP56192 900 aaKnown RBP6.3□□□□□ -1.4
LIMA1-208ENST00000551691 POU4F2Q12837 409 aa6.3□□□□□ -1.4
LIMA1-208ENST00000551691 ZNF837Q96EG3 531 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-208ENST00000551691 GJD4Q96KN9 370 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-208ENST00000551691 GAS2L1Q99501 681 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-208ENST00000551691 PLB1Q6P1J6 1458 aa6.29□□□□□ -1.4
LIMA1-208ENST00000551691 LOC100996750A0A140TA64 210 aa6.29□□□□□ -1.4
LIMA1-208ENST00000551691 GPAT2Q6NUI2 795 aa6.29□□□□□ -1.4
LIMA1-208ENST00000551691 GTPBP3Q969Y2 492 aaKnown RBP6.29□□□□□ -1.4
LIMA1-208ENST00000551691 KRTAP4-6Q9BYQ5 205 aa6.29□□□□□ -1.4
LIMA1-208ENST00000551691 RAB6BQ9NRW1 208 aa6.29□□□□□ -1.4
LIMA1-208ENST00000551691 SERPINA10Q9UK55 444 aa6.29□□□□□ -1.4
LIMA1-208ENST00000551691 ZNF777Q9ULD5 760 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-208ENST00000551691 EPRSP07814 1512 aaKnown RBP6.29□□□□□ -1.4
LIMA1-208ENST00000551691 RNF225M0QZC1 329 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-208ENST00000551691 RAPGEF3O95398 923 aa6.28□□□□□ -1.4
LIMA1-208ENST00000551691 CELA2BP08218 269 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-208ENST00000551691 RNF144AP50876 292 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-208ENST00000551691 DBN1Q16643 649 aa6.28□□□□□ -1.4
LIMA1-208ENST00000551691 ADAMTSL3P82987 1691 aa6.27□□□□□ -1.41
LIMA1-208ENST00000551691 TMEM259Q4ZIN3 620 aa6.27□□□□□ -1.41
LIMA1-208ENST00000551691 SLC27A3Q5K4L6 730 aa6.27□□□□□ -1.41
LIMA1-208ENST00000551691 SEPT12Q8IYM1 358 aa6.27□□□□□ -1.41
LIMA1-208ENST00000551691 ARHGEF10LQ9HCE6 1279 aa6.27□□□□□ -1.41
LIMA1-208ENST00000551691 PRM3Q9NNZ6 103 aa6.27□□□□□ -1.41
LIMA1-208ENST00000551691 PCDHB11Q9Y5F2 797 aa6.27□□□□□ -1.41
LIMA1-208ENST00000551691 ABCC2Q92887 1545 aa6.26□□□□□ -1.41
LIMA1-208ENST00000551691 MAP3K4Q9Y6R4 1608 aa6.26□□□□□ -1.41
LIMA1-208ENST00000551691 MAP3K10Q02779 954 aa6.26□□□□□ -1.41
LIMA1-208ENST00000551691 SRSF11Q05519 484 aaKnown RBP6.26□□□□□ -1.41
LIMA1-208ENST00000551691 CC2D2BQ6DHV5 1058 aa6.26□□□□□ -1.41
LIMA1-208ENST00000551691 NLRP3Q96P20 1036 aa6.26□□□□□ -1.41
LIMA1-208ENST00000551691 TEX14Q8IWB6 1497 aa6.26□□□□□ -1.41
LIMA1-208ENST00000551691 GPR37L1O60883 481 aa6.25□□□□□ -1.41
LIMA1-208ENST00000551691 ERVK-9P63128 1117 aa6.25□□□□□ -1.41
LIMA1-208ENST00000551691 TRIM22Q8IYM9 498 aa6.25□□□□□ -1.41
LIMA1-208ENST00000551691 IGF1RP08069 1367 aa6.25□□□□□ -1.41
LIMA1-208ENST00000551691 CUL7Q14999 1698 aa6.25□□□□□ -1.41
LIMA1-208ENST00000551691 CNTNAP5Q8WYK1 1306 aa6.25□□□□□ -1.41
LIMA1-208ENST00000551691 UBAP1LF5GYI3 381 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 PHKA2P46019 1235 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 CEBPAP49715 358 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-208ENST00000551691 NR1H3Q13133 447 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms