RNA–Protein interactions for RNA: ENST00000548522.5

SSH1-208, Transcript of slingshot protein phosphatase 1, humanhuman

TSL 3

Gene SSH1, Length 602 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH1-208ENST00000548522 IFNL2Q8IZJ0 200 aa22.78■■□□□ 1.24
SSH1-208ENST00000548522 HMGB2P26583 209 aaKnown RBP22.77■■□□□ 1.24
SSH1-208ENST00000548522 SLC4A9Q96Q91 983 aa22.76■■□□□ 1.23
SSH1-208ENST00000548522 GPBP1L1Q9HC44 474 aaPredicted RBP22.74■■□□□ 1.23
SSH1-208ENST00000548522 MMP10P09238 476 aa22.73■■□□□ 1.23
SSH1-208ENST00000548522 KDM6AO15550 1401 aaPredicted RBP22.73■■□□□ 1.23
SSH1-208ENST00000548522 PXDNLA1KZ92 1463 aa22.73■■□□□ 1.23
SSH1-208ENST00000548522 CICQ96RK0 1608 aaPredicted RBP22.71■■□□□ 1.23
SSH1-208ENST00000548522 KIAA1551Q9HCM1 1747 aa22.71■■□□□ 1.23
SSH1-208ENST00000548522 AEBP1Q8IUX7 1158 aa22.69■■□□□ 1.22
SSH1-208ENST00000548522 RBM42Q9BTD8 480 aaKnown RBP22.69■■□□□ 1.22
SSH1-208ENST00000548522 TIMELESSQ9UNS1 1208 aa22.69■■□□□ 1.22
SSH1-208ENST00000548522 PLEKHG2Q9H7P9 1386 aa22.68■■□□□ 1.22
SSH1-208ENST00000548522 C10orf71Q711Q0 1435 aa22.67■■□□□ 1.22
SSH1-208ENST00000548522 PANK3Q9H999 370 aa22.67■■□□□ 1.22
SSH1-208ENST00000548522 RTCBQ9Y3I0 505 aaKnown RBP22.67■■□□□ 1.22
SSH1-208ENST00000548522 COL5A3P25940 1745 aaPredicted RBP22.67■■□□□ 1.22
SSH1-208ENST00000548522 ERVV-2B6SEH9 535 aa22.66■■□□□ 1.22
SSH1-208ENST00000548522 ZNF530Q6P9A1 599 aaPredicted RBP22.66■■□□□ 1.22
SSH1-208ENST00000548522 DCAF5Q96JK2 942 aa22.66■■□□□ 1.22
SSH1-208ENST00000548522 HSPA5P11021 654 aaKnown RBP22.65■■□□□ 1.22
SSH1-208ENST00000548522 TRAPPC3LQ5T215 181 aa22.65■■□□□ 1.22
SSH1-208ENST00000548522 ARHGEF1Q92888 912 aaKnown RBP22.65■■□□□ 1.22
SSH1-208ENST00000548522 PCGF6Q9BYE7 350 aa22.65■■□□□ 1.22
SSH1-208ENST00000548522 KIF13BQ9NQT8 1826 aa22.65■■□□□ 1.22
SSH1-208ENST00000548522 ZNF831Q5JPB2 1677 aa22.65■■□□□ 1.22
SSH1-208ENST00000548522 CNTNAP4Q9C0A0 1308 aa22.64■■□□□ 1.22
SSH1-208ENST00000548522 N4BP2Q86UW6 1770 aaPredicted RBP22.64■■□□□ 1.22
SSH1-208ENST00000548522 A0A0G2JLW4 131 aa22.64■■□□□ 1.21
SSH1-208ENST00000548522 GYS1P13807 737 aa22.63■■□□□ 1.21
SSH1-208ENST00000548522 PLEKHO1Q53GL0 409 aaPredicted RBP22.63■■□□□ 1.21
SSH1-208ENST00000548522 C4AP0C0L4 1744 aa22.62■■□□□ 1.21
SSH1-208ENST00000548522 KIF3CO14782 793 aa22.62■■□□□ 1.21
SSH1-208ENST00000548522 HSP90AB1P08238 724 aaKnown RBP22.62■■□□□ 1.21
SSH1-208ENST00000548522 HSPA6P17066 643 aa22.62■■□□□ 1.21
SSH1-208ENST00000548522 CABP4P57796 275 aa22.62■■□□□ 1.21
SSH1-208ENST00000548522 BCS1LQ9Y276 419 aa22.62■■□□□ 1.21
SSH1-208ENST00000548522 PTCD1O75127 700 aaKnown RBP22.61■■□□□ 1.21
SSH1-208ENST00000548522 RC3H1Q5TC82 1133 aaKnown RBP22.61■■□□□ 1.21
SSH1-208ENST00000548522 NLGN1Q8N2Q7 840 aa22.61■■□□□ 1.21
SSH1-208ENST00000548522 RPS6KA4O75676 772 aa22.6■■□□□ 1.21
SSH1-208ENST00000548522 DPEP1P16444 411 aa22.6■■□□□ 1.21
SSH1-208ENST00000548522 ADRA2BP18089 450 aa22.6■■□□□ 1.21
SSH1-208ENST00000548522 EIF4G2P78344 907 aaKnown RBP eCLIP22.6■■□□□ 1.213e-7■■■■■ 36.1
SSH1-208ENST00000548522 MYH14Q7Z406 1995 aaKnown RBP22.59■■□□□ 1.21
SSH1-208ENST00000548522 CLSPNQ9HAW4 1339 aa22.59■■□□□ 1.21
SSH1-208ENST00000548522 RFC4P35249 363 aa22.59■■□□□ 1.21
SSH1-208ENST00000548522 MTHFSP49914 203 aa22.59■■□□□ 1.21
SSH1-208ENST00000548522 TGFB2P61812 414 aa22.59■■□□□ 1.21
SSH1-208ENST00000548522 SRP68Q9UHB9 627 aaKnown RBP22.59■■□□□ 1.21
SSH1-208ENST00000548522 AMOTQ4VCS5 1084 aa22.58■■□□□ 1.21
SSH1-208ENST00000548522 MORC1Q86VD1 984 aa22.58■■□□□ 1.21
SSH1-208ENST00000548522 TJP1Q07157 1748 aa22.57■■□□□ 1.2
SSH1-208ENST00000548522 CRKLP46109 303 aaKnown RBP22.57■■□□□ 1.2
SSH1-208ENST00000548522 SULT6B1Q6IMI4 303 aa22.57■■□□□ 1.2
SSH1-208ENST00000548522 NFATC2IPQ8NCF5 419 aa22.57■■□□□ 1.2
SSH1-208ENST00000548522 CCDC87Q9NVE4 849 aa22.57■■□□□ 1.2
SSH1-208ENST00000548522 C1orf141Q5JVX7 400 aa22.56■■□□□ 1.2
SSH1-208ENST00000548522 DDR1Q08345 913 aa22.55■■□□□ 1.2
SSH1-208ENST00000548522 PARP3Q9Y6F1 533 aa22.55■■□□□ 1.2
SSH1-208ENST00000548522 FCHSD2O94868 740 aa22.54■■□□□ 1.2
SSH1-208ENST00000548522 KCNA3P22001 575 aa22.54■■□□□ 1.2
SSH1-208ENST00000548522 FKBP8Q14318 412 aa22.54■■□□□ 1.2
SSH1-208ENST00000548522 IFFO2Q5TF58 517 aa22.54■■□□□ 1.2
SSH1-208ENST00000548522 ARHGAP27Q6ZUM4 889 aa22.54■■□□□ 1.2
SSH1-208ENST00000548522 BRCA1P38398 1863 aaKnown RBP22.54■■□□□ 1.2
SSH1-208ENST00000548522 IL13P35225 146 aa22.53■■□□□ 1.2
SSH1-208ENST00000548522 USP42Q9H9J4 1324 aaKnown RBP22.53■■□□□ 1.2
SSH1-208ENST00000548522 ADAMTS7Q9UKP4 1686 aa22.52■■□□□ 1.2
SSH1-208ENST00000548522 INTS5Q6P9B9 1019 aaKnown RBP22.51■■□□□ 1.19
SSH1-208ENST00000548522 NMRK2Q9NPI5 230 aa22.51■■□□□ 1.19
SSH1-208ENST00000548522 DNAJC10Q8IXB1 793 aa22.49■■□□□ 1.19
SSH1-208ENST00000548522 SCN11AQ9UI33 1791 aa22.48■■□□□ 1.19
SSH1-208ENST00000548522 CHRNA5P30532 468 aa22.48■■□□□ 1.19
SSH1-208ENST00000548522 AMER1Q5JTC6 1135 aaPredicted RBP22.48■■□□□ 1.19
SSH1-208ENST00000548522 LGR6Q9HBX8 967 aa22.48■■□□□ 1.19
SSH1-208ENST00000548522 KNSTRNQ9Y448 316 aa22.48■■□□□ 1.19
SSH1-208ENST00000548522 MRC1P22897 1456 aa22.47■■□□□ 1.19
SSH1-208ENST00000548522 C9orf131Q5VYM1 1079 aa22.47■■□□□ 1.19
SSH1-208ENST00000548522 POLRMTO00411 1230 aaKnown RBP22.46■■□□□ 1.19
SSH1-208ENST00000548522 SLC52A2Q9HAB3 445 aa22.46■■□□□ 1.19
SSH1-208ENST00000548522 KCPQ6ZWJ8 1503 aa22.46■■□□□ 1.19
SSH1-208ENST00000548522 HMOX1P09601 288 aa22.45■■□□□ 1.18
SSH1-208ENST00000548522 SLC39A6Q13433 755 aa22.45■■□□□ 1.18
SSH1-208ENST00000548522 AKAP4Q5JQC9 854 aa22.45■■□□□ 1.18
SSH1-208ENST00000548522 PIM2Q9P1W9 311 aa22.45■■□□□ 1.18
SSH1-208ENST00000548522 SOS1Q07889 1333 aaPredicted RBP22.45■■□□□ 1.18
SSH1-208ENST00000548522 TOMM70O94826 608 aa22.44■■□□□ 1.18
SSH1-208ENST00000548522 DALRD3Q5D0E6 543 aaKnown RBP22.44■■□□□ 1.18
SSH1-208ENST00000548522 USPL1Q5W0Q7 1092 aa22.44■■□□□ 1.18
SSH1-208ENST00000548522 ARFGEF1Q9Y6D6 1849 aa22.44■■□□□ 1.18
SSH1-208ENST00000548522 KIF7Q2M1P5 1343 aa22.42■■□□□ 1.18
SSH1-208ENST00000548522 TM4SF1P30408 202 aa22.42■■□□□ 1.18
SSH1-208ENST00000548522 RNMTO43148 476 aaKnown RBP22.41■■□□□ 1.18
SSH1-208ENST00000548522 CYP19A1P11511 503 aaPredicted RBP22.41■■□□□ 1.18
SSH1-208ENST00000548522 APLP1P51693 650 aa22.41■■□□□ 1.18
SSH1-208ENST00000548522 ZBTB1Q9Y2K1 713 aa22.41■■□□□ 1.18
SSH1-208ENST00000548522 COL15A1P39059 1388 aa22.4■■□□□ 1.18
SSH1-208ENST00000548522 MTHFSDQ2M296 383 aaKnown RBP22.4■■□□□ 1.18
SSH1-208ENST00000548522 RNF181Q9P0P0 153 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms