RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 MMP10P09238 476 aa11.96□□□□□ -0.49
CLSTN3-212ENST00000541770 SPG7Q9UQ90 795 aa11.96□□□□□ -0.49
CLSTN3-212ENST00000541770 KIAA1551Q9HCM1 1747 aa11.96□□□□□ -0.49
CLSTN3-212ENST00000541770 CICQ96RK0 1608 aaPredicted RBP11.96□□□□□ -0.5
CLSTN3-212ENST00000541770 A0A0G2JLW4 131 aa11.95□□□□□ -0.5
CLSTN3-212ENST00000541770 ASAP1Q9ULH1 1129 aa11.95□□□□□ -0.5
CLSTN3-212ENST00000541770 EMILIN1Q9Y6C2 1016 aa11.95□□□□□ -0.5
CLSTN3-212ENST00000541770 PXDNLA1KZ92 1463 aa11.95□□□□□ -0.5
CLSTN3-212ENST00000541770 ITPK1Q13572 414 aa11.94□□□□□ -0.5
CLSTN3-212ENST00000541770 C16orf71Q8IYS4 520 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-212ENST00000541770 NMRK2Q9NPI5 230 aa11.94□□□□□ -0.5
CLSTN3-212ENST00000541770 KIF7Q2M1P5 1343 aa11.93□□□□□ -0.5
CLSTN3-212ENST00000541770 FCHSD2O94868 740 aa11.93□□□□□ -0.5
CLSTN3-212ENST00000541770 TRAPPC3LQ5T215 181 aa11.93□□□□□ -0.5
CLSTN3-212ENST00000541770 RTCBQ9Y3I0 505 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-212ENST00000541770 KIF24Q5T7B8 1368 aa11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 C4AP0C0L4 1744 aa11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 BRCA1P38398 1863 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 CAPN15O75808 1086 aa11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 TGFB2P61812 414 aa11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 NKX1-1Q15270 411 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 IFNL2Q8IZJ0 200 aa11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 RBM42Q9BTD8 480 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 CCDC87Q9NVE4 849 aa11.92□□□□□ -0.5
CLSTN3-212ENST00000541770 DPEP1P16444 411 aa11.91□□□□□ -0.5
CLSTN3-212ENST00000541770 HTRA3P83110 453 aa11.91□□□□□ -0.5
CLSTN3-212ENST00000541770 DNAJC5GQ8N7S2 189 aa11.91□□□□□ -0.5
CLSTN3-212ENST00000541770 ATG3Q9NT62 314 aa11.91□□□□□ -0.5
CLSTN3-212ENST00000541770 PARP3Q9Y6F1 533 aa11.91□□□□□ -0.5
CLSTN3-212ENST00000541770 ARFGEF1Q9Y6D6 1849 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 WASHC2AQ641Q2 1341 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 PHKG2P15735 406 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 COL5A3P25940 1745 aaPredicted RBP11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 RFC4P35249 363 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 C9orf131Q5VYM1 1079 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 NLGN1Q8N2Q7 840 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 EYA1Q99502 592 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 POLR3GLQ9BT43 218 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 ANKRD26Q9UPS8 1709 aa11.9□□□□□ -0.5
CLSTN3-212ENST00000541770 C10orf71Q711Q0 1435 aa11.89□□□□□ -0.51
CLSTN3-212ENST00000541770 ARHGEF1Q92888 912 aaKnown RBP11.89□□□□□ -0.51
CLSTN3-212ENST00000541770 KCPQ6ZWJ8 1503 aa11.88□□□□□ -0.51
CLSTN3-212ENST00000541770 RBM46Q8TBY0 533 aaKnown RBP11.88□□□□□ -0.51
CLSTN3-212ENST00000541770 NCAPD2Q15021 1401 aa11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 GYS1P13807 737 aa11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 COL13A1Q5TAT6 717 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 KLRG1Q96E93 195 aa11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 CARD14Q9BXL6 1004 aa11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 RRAGCQ9HB90 399 aa11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 RNF181Q9P0P0 153 aa11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 PLEKHG2Q9H7P9 1386 aa11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 TNRC6CQ9HCJ0 1690 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-212ENST00000541770 KDM2BQ8NHM5 1336 aa11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 TNNT2P45379 298 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 SLC4A9Q96Q91 983 aa11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 PANK3Q9H999 370 aa11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 PIM2Q9P1W9 311 aa11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 KDRP35968 1356 aa11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 ZNF831Q5JPB2 1677 aa11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 SBF1O95248 1867 aa11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 MYH14Q7Z406 1995 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-212ENST00000541770 RPS6KA4O75676 772 aa11.85□□□□□ -0.51
CLSTN3-212ENST00000541770 ADRA2BP18089 450 aa11.85□□□□□ -0.51
CLSTN3-212ENST00000541770 CABP4P57796 275 aa11.85□□□□□ -0.51
CLSTN3-212ENST00000541770 DALRD3Q5D0E6 543 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-212ENST00000541770 PTCD1O75127 700 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 KCNA3P22001 575 aa11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 FSTL1Q12841 308 aa11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 RC3H1Q5TC82 1133 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 TNS4Q8IZW8 715 aa11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 SRP68Q9UHB9 627 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 CCDC88AQ3V6T2 1871 aa11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 CNTNAP4Q9C0A0 1308 aa11.84□□□□□ -0.51
CLSTN3-212ENST00000541770 ERVV-2B6SEH9 535 aa11.83□□□□□ -0.52
CLSTN3-212ENST00000541770 HSP90AB1P08238 724 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-212ENST00000541770 CHRNA5P30532 468 aa11.83□□□□□ -0.52
CLSTN3-212ENST00000541770 EIF4A2Q14240 407 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-212ENST00000541770 POLKQ9UBT6 870 aa11.83□□□□□ -0.52
CLSTN3-212ENST00000541770 PER1O15534 1290 aaPredicted RBP11.82□□□□□ -0.52
CLSTN3-212ENST00000541770 FKBP8Q14318 412 aa11.82□□□□□ -0.52
CLSTN3-212ENST00000541770 PLEKHO1Q53GL0 409 aaPredicted RBP11.82□□□□□ -0.52
CLSTN3-212ENST00000541770 ZNF530Q6P9A1 599 aaPredicted RBP11.82□□□□□ -0.52
CLSTN3-212ENST00000541770 JMYQ8N9B5 988 aa11.82□□□□□ -0.52
CLSTN3-212ENST00000541770 DCAF5Q96JK2 942 aa11.82□□□□□ -0.52
CLSTN3-212ENST00000541770 TJP1Q07157 1748 aa11.81□□□□□ -0.52
CLSTN3-212ENST00000541770 CRKLP46109 303 aaKnown RBP11.81□□□□□ -0.52
CLSTN3-212ENST00000541770 SMC1BQ8NDV3 1235 aa11.81□□□□□ -0.52
CLSTN3-212ENST00000541770 KNSTRNQ9Y448 316 aa11.81□□□□□ -0.52
CLSTN3-212ENST00000541770 MTHFSP49914 203 aa11.8□□□□□ -0.52
CLSTN3-212ENST00000541770 RASSF7Q02833 373 aa11.8□□□□□ -0.52
CLSTN3-212ENST00000541770 DDR1Q08345 913 aa11.8□□□□□ -0.52
CLSTN3-212ENST00000541770 C1orf141Q5JVX7 400 aa11.8□□□□□ -0.52
CLSTN3-212ENST00000541770 AFDNP55196 1824 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-212ENST00000541770 USP42Q9H9J4 1324 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-212ENST00000541770 TIAM2Q8IVF5 1701 aa11.8□□□□□ -0.52
CLSTN3-212ENST00000541770 KDM6AO15550 1401 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-212ENST00000541770 ZNF316A6NFI3 1004 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-212ENST00000541770 AMER1Q5JTC6 1135 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-212ENST00000541770 NFATC2IPQ8NCF5 419 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 203.5 ms